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ds004173-catqc/logs/10071060.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1234003/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1234003/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234003/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:30 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:30 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234003/ds/sub-262577/sub-262577_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-262577/sub-262577_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 50s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
41s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
70s
SPM preprocessing 1 (estimate 2): 51s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
84s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 10s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 24s
90s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 16s
Ventricle detection 14s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 63s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
116s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 30s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 25s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 33s
ROI estimation of 'anatomy3' atlas 49s
ROI estimation of 'julichbrain' atlas 70s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 132s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 177s
Write results 181s
686s
Quality check 15s
/var/lib/condor/execute/dir_1234003/ds/sub-262577/report/catreport_sub-262577_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 59 second(s).
Image Quality Rating (IQR): 87.87% (B+)
GM volume (GMV): 49.13% (646.05 / 1315.03 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234003/ds/sub-262577/mri
Reports are saved in /var/lib/condor/execute/dir_1234003/ds/sub-262577/report
Labels are saved in /var/lib/condor/execute/dir_1234003/ds/sub-262577/label
------------------------------------------------------------------------
22-Oct-2025 01:07:32 - Done 'CAT12: Segmentation'
22-Oct-2025 01:07:32 - Done
Bye for now...
get(ok): sourcedata/raw/sub-262577/anat/sub-262577_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234003/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1234003/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-262577/label/catROI_sub-262577_acq-headmotion1_T1w.mat (file)
add(ok): sub-262577/label/catROI_sub-262577_acq-headmotion1_T1w.xml (file)
add(ok): sub-262577/mri/it_sub-262577_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-262577/mri/it_sub-262577_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-262577/mri/m0wp1sub-262577_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-262577/mri/mwp1sub-262577_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-262577/mri/p0sub-262577_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-262577/mri/t_sub-262577_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-262577/mri/t_sub-262577_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-262577/mri/wp0sub-262577_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-262577/report/cat_sub-262577_acq-headmotion1_T1w.mat (file)
add(ok): sub-262577/report/cat_sub-262577_acq-headmotion1_T1w.xml (file)
add(ok): sub-262577/report/catlog_sub-262577_acq-headmotion1_T1w.txt (file)
add(ok): sub-262577/report/catreport_sub-262577_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:08:23 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:08:24 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234003/ds/sub-262577/sub-262577_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-262577/sub-262577_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 54s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
68s
SPM preprocessing 1 (estimate 2): 56s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 42s
Update probability maps 8s
84s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 6s
101s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.03) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
93s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 14s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 61s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
115s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.07,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 34s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 24s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 18s
ROI estimation of 'mori' atlas 26s
ROI estimation of 'anatomy3' atlas 36s
ROI estimation of 'julichbrain' atlas 59s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 29s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 54s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 106s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 145s
Write results 148s
580s
Quality check 15s
/var/lib/condor/execute/dir_1234003/ds/sub-262577/report/catreport_sub-262577_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 47 second(s).
Image Quality Rating (IQR): 88.04% (B+)
GM volume (GMV): 50.04% (660.03 / 1318.89 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234003/ds/sub-262577/mri
Reports are saved in /var/lib/condor/execute/dir_1234003/ds/sub-262577/report
Labels are saved in /var/lib/condor/execute/dir_1234003/ds/sub-262577/label
------------------------------------------------------------------------
22-Oct-2025 01:34:13 - Done 'CAT12: Segmentation'
22-Oct-2025 01:34:13 - Done
Bye for now...
get(ok): sourcedata/raw/sub-262577/anat/sub-262577_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-262577/label/catROI_sub-262577_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-262577/mri/it_sub-262577_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-262577/mri/it_sub-262577_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-262577/mri/m0wp1sub-262577_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-262577/mri/mwp1sub-262577_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-262577/mri/p0sub-262577_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-262577/mri/t_sub-262577_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-262577/mri/t_sub-262577_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-262577/mri/wp0sub-262577_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-262577/report/cat_sub-262577_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-262577/report/catreport_sub-262577_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234003/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-262577/label/catROI_sub-262577_acq-standard_T1w.mat (file)
add(ok): sub-262577/label/catROI_sub-262577_acq-standard_T1w.xml (file)
add(ok): sub-262577/mri/it_sub-262577_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-262577/mri/it_sub-262577_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-262577/mri/m0wp1sub-262577_acq-standard_T1w.nii.gz (file)
add(ok): sub-262577/mri/mwp1sub-262577_acq-standard_T1w.nii.gz (file)
add(ok): sub-262577/mri/p0sub-262577_acq-standard_T1w.nii.gz (file)
add(ok): sub-262577/mri/t_sub-262577_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-262577/mri/t_sub-262577_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-262577/mri/wp0sub-262577_acq-standard_T1w.nii.gz (file)
add(ok): sub-262577/report/cat_sub-262577_acq-standard_T1w.mat (file)
add(ok): sub-262577/report/cat_sub-262577_acq-standard_T1w.xml (file)
add(ok): sub-262577/report/catlog_sub-262577_acq-standard_T1w.txt (file)
add(ok): sub-262577/report/catreport_sub-262577_acq-standard_T1w.pdf (file)
add(ok): sub-262577/label/catROI_sub-262577_acq-headmotion1_T1w.mat (file)
add(ok): sub-262577/mri/it_sub-262577_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-262577/mri/it_sub-262577_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-262577/mri/m0wp1sub-262577_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-262577/mri/mwp1sub-262577_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-262577/mri/p0sub-262577_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-262577/mri/t_sub-262577_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-262577/mri/t_sub-262577_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-262577/mri/wp0sub-262577_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-262577/report/cat_sub-262577_acq-headmotion1_T1w.mat (file)
add(ok): sub-262577/report/catreport_sub-262577_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:35:13 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:35:13 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234003/ds/sub-262577/sub-262577_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-262577/sub-262577_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 55s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 7s
42s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
68s
SPM preprocessing 1 (estimate 2): 47s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 9s
83s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 10s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
91s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 17s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 68s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
125s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 26s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 20s
ROI estimation of 'anatomy3' atlas 31s
ROI estimation of 'julichbrain' atlas 43s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 45s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 85s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 87s
Write results 89s
454s
Quality check 13s
/var/lib/condor/execute/dir_1234003/ds/sub-262577/report/catreport_sub-262577_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 36 second(s).
Image Quality Rating (IQR): 87.23% (B+)
GM volume (GMV): 48.99% (642.07 / 1310.60 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234003/ds/sub-262577/mri
Reports are saved in /var/lib/condor/execute/dir_1234003/ds/sub-262577/report
Labels are saved in /var/lib/condor/execute/dir_1234003/ds/sub-262577/label
------------------------------------------------------------------------
22-Oct-2025 01:58:53 - Done 'CAT12: Segmentation'
22-Oct-2025 01:58:53 - Done
Bye for now...
get(ok): sourcedata/raw/sub-262577/anat/sub-262577_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-262577/label/catROI_sub-262577_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-262577/label/catROI_sub-262577_acq-standard_T1w.mat (file)
unlock(ok): sub-262577/mri/it_sub-262577_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-262577/mri/it_sub-262577_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-262577/mri/it_sub-262577_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-262577/mri/it_sub-262577_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-262577/mri/m0wp1sub-262577_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-262577/mri/m0wp1sub-262577_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-262577/mri/mwp1sub-262577_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-262577/mri/mwp1sub-262577_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-262577/mri/p0sub-262577_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-262577/mri/p0sub-262577_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-262577/mri/t_sub-262577_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-262577/mri/t_sub-262577_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-262577/mri/t_sub-262577_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-262577/mri/t_sub-262577_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-262577/mri/wp0sub-262577_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-262577/mri/wp0sub-262577_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-262577/report/cat_sub-262577_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-262577/report/cat_sub-262577_acq-standard_T1w.mat (file)
unlock(ok): sub-262577/report/catreport_sub-262577_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-262577/report/catreport_sub-262577_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234003/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-262577/label/catROI_sub-262577_acq-headmotion2_T1w.mat (file)
add(ok): sub-262577/label/catROI_sub-262577_acq-headmotion2_T1w.xml (file)
add(ok): sub-262577/mri/it_sub-262577_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-262577/mri/it_sub-262577_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-262577/mri/m0wp1sub-262577_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-262577/mri/mwp1sub-262577_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-262577/mri/p0sub-262577_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-262577/mri/t_sub-262577_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-262577/mri/t_sub-262577_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-262577/mri/wp0sub-262577_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-262577/report/cat_sub-262577_acq-headmotion2_T1w.mat (file)
add(ok): sub-262577/report/cat_sub-262577_acq-headmotion2_T1w.xml (file)
add(ok): sub-262577/report/catlog_sub-262577_acq-headmotion2_T1w.txt (file)
add(ok): sub-262577/report/catreport_sub-262577_acq-headmotion2_T1w.pdf (file)
add(ok): sub-262577/label/catROI_sub-262577_acq-headmotion1_T1w.mat (file)
add(ok): sub-262577/label/catROI_sub-262577_acq-standard_T1w.mat (file)
add(ok): sub-262577/mri/it_sub-262577_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-262577/mri/it_sub-262577_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-262577/mri/it_sub-262577_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-262577/mri/it_sub-262577_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-262577/mri/m0wp1sub-262577_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-262577/mri/m0wp1sub-262577_acq-standard_T1w.nii.gz (file)
add(ok): sub-262577/mri/mwp1sub-262577_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-262577/mri/mwp1sub-262577_acq-standard_T1w.nii.gz (file)
add(ok): sub-262577/mri/p0sub-262577_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-262577/mri/p0sub-262577_acq-standard_T1w.nii.gz (file)
add(ok): sub-262577/mri/t_sub-262577_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-262577/mri/t_sub-262577_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-262577/mri/t_sub-262577_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-262577/mri/t_sub-262577_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-262577/mri/wp0sub-262577_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-262577/mri/wp0sub-262577_acq-standard_T1w.nii.gz (file)
add(ok): sub-262577/report/cat_sub-262577_acq-headmotion1_T1w.mat (file)
add(ok): sub-262577/report/cat_sub-262577_acq-standard_T1w.mat (file)
add(ok): sub-262577/report/catreport_sub-262577_acq-headmotion1_T1w.pdf (file)
add(ok): sub-262577/report/catreport_sub-262577_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-262577/label/catROI_sub-262577_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/label/catROI_sub-262577_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/label/catROI_sub-262577_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/it_sub-262577_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/it_sub-262577_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/it_sub-262577_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/it_sub-262577_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/it_sub-262577_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/it_sub-262577_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/m0wp1sub-262577_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/m0wp1sub-262577_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/m0wp1sub-262577_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/mwp1sub-262577_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/mwp1sub-262577_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/mwp1sub-262577_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/p0sub-262577_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/p0sub-262577_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/p0sub-262577_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/t_sub-262577_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/t_sub-262577_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/t_sub-262577_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/t_sub-262577_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/t_sub-262577_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/t_sub-262577_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/wp0sub-262577_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/wp0sub-262577_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-262577/mri/wp0sub-262577_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-262577/report/cat_sub-262577_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/report/cat_sub-262577_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/report/cat_sub-262577_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-262577/report/catreport_sub-262577_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-262577/report/catreport_sub-262577_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-262577/report/catreport_sub-262577_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000978 seconds
flock: executing git
SUCCESS
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