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ds004173-catqc/logs/10071059.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1233996/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1233996/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233996/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:31 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:31 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233996/ds/sub-865293/sub-865293_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-865293/sub-865293_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 62s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
77s
SPM preprocessing 1 (estimate 2): 47s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
85s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 8s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.10) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
93s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 13s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 70s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
124s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 34s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 28s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 23s
ROI estimation of 'mori' atlas 34s
ROI estimation of 'anatomy3' atlas 52s
ROI estimation of 'julichbrain' atlas 82s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 132s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 136s
Write results 140s
686s
Quality check 14s
/var/lib/condor/execute/dir_1233996/ds/sub-865293/report/catreport_sub-865293_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 33 second(s).
Image Quality Rating (IQR): 87.61% (B+)
GM volume (GMV): 46.71% (636.25 / 1362.28 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233996/ds/sub-865293/mri
Reports are saved in /var/lib/condor/execute/dir_1233996/ds/sub-865293/report
Labels are saved in /var/lib/condor/execute/dir_1233996/ds/sub-865293/label
------------------------------------------------------------------------
22-Oct-2025 01:08:07 - Done 'CAT12: Segmentation'
22-Oct-2025 01:08:07 - Done
Bye for now...
get(ok): sourcedata/raw/sub-865293/anat/sub-865293_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233996/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1233996/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-865293/label/catROI_sub-865293_acq-headmotion1_T1w.mat (file)
add(ok): sub-865293/label/catROI_sub-865293_acq-headmotion1_T1w.xml (file)
add(ok): sub-865293/mri/it_sub-865293_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-865293/mri/it_sub-865293_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-865293/mri/m0wp1sub-865293_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-865293/mri/mwp1sub-865293_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-865293/mri/p0sub-865293_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-865293/mri/t_sub-865293_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-865293/mri/t_sub-865293_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-865293/mri/wp0sub-865293_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-865293/report/cat_sub-865293_acq-headmotion1_T1w.mat (file)
add(ok): sub-865293/report/cat_sub-865293_acq-headmotion1_T1w.xml (file)
add(ok): sub-865293/report/catlog_sub-865293_acq-headmotion1_T1w.txt (file)
add(ok): sub-865293/report/catreport_sub-865293_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:08:58 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:08:58 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233996/ds/sub-865293/sub-865293_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-865293/sub-865293_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 66s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
41s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
76s
SPM preprocessing 1 (estimate 2): 54s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 41s
Update probability maps 8s
84s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 7s
100s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.08) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
93s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 18s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.09) 76s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
135s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 12s
ROI estimation of 'neuromorphometrics' atlas 41s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 28s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 23s
ROI estimation of 'mori' atlas 34s
ROI estimation of 'anatomy3' atlas 48s
ROI estimation of 'julichbrain' atlas 63s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 53s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 93s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 94s
Write results 96s
564s
Quality check 13s
/var/lib/condor/execute/dir_1233996/ds/sub-865293/report/catreport_sub-865293_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 13 second(s).
Image Quality Rating (IQR): 87.98% (B+)
GM volume (GMV): 46.92% (641.47 / 1367.24 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233996/ds/sub-865293/mri
Reports are saved in /var/lib/condor/execute/dir_1233996/ds/sub-865293/report
Labels are saved in /var/lib/condor/execute/dir_1233996/ds/sub-865293/label
------------------------------------------------------------------------
22-Oct-2025 01:35:15 - Done 'CAT12: Segmentation'
22-Oct-2025 01:35:15 - Done
Bye for now...
get(ok): sourcedata/raw/sub-865293/anat/sub-865293_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-865293/label/catROI_sub-865293_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-865293/mri/it_sub-865293_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-865293/mri/it_sub-865293_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-865293/mri/m0wp1sub-865293_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-865293/mri/mwp1sub-865293_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-865293/mri/p0sub-865293_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-865293/mri/t_sub-865293_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-865293/mri/t_sub-865293_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-865293/mri/wp0sub-865293_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-865293/report/cat_sub-865293_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-865293/report/catreport_sub-865293_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233996/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-865293/label/catROI_sub-865293_acq-standard_T1w.mat (file)
add(ok): sub-865293/label/catROI_sub-865293_acq-standard_T1w.xml (file)
add(ok): sub-865293/mri/it_sub-865293_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-865293/mri/it_sub-865293_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-865293/mri/m0wp1sub-865293_acq-standard_T1w.nii.gz (file)
add(ok): sub-865293/mri/mwp1sub-865293_acq-standard_T1w.nii.gz (file)
add(ok): sub-865293/mri/p0sub-865293_acq-standard_T1w.nii.gz (file)
add(ok): sub-865293/mri/t_sub-865293_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-865293/mri/t_sub-865293_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-865293/mri/wp0sub-865293_acq-standard_T1w.nii.gz (file)
add(ok): sub-865293/report/cat_sub-865293_acq-standard_T1w.mat (file)
add(ok): sub-865293/report/cat_sub-865293_acq-standard_T1w.xml (file)
add(ok): sub-865293/report/catlog_sub-865293_acq-standard_T1w.txt (file)
add(ok): sub-865293/report/catreport_sub-865293_acq-standard_T1w.pdf (file)
add(ok): sub-865293/label/catROI_sub-865293_acq-headmotion1_T1w.mat (file)
add(ok): sub-865293/mri/it_sub-865293_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-865293/mri/it_sub-865293_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-865293/mri/m0wp1sub-865293_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-865293/mri/mwp1sub-865293_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-865293/mri/p0sub-865293_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-865293/mri/t_sub-865293_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-865293/mri/t_sub-865293_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-865293/mri/wp0sub-865293_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-865293/report/cat_sub-865293_acq-headmotion1_T1w.mat (file)
add(ok): sub-865293/report/catreport_sub-865293_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:36:05 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:36:05 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233996/ds/sub-865293/sub-865293_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-865293/sub-865293_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
41s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
74s
SPM preprocessing 1 (estimate 2): 48s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 42s
Update probability maps 8s
83s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 9s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.02) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
93s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 17s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 65s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
121s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
11s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 37s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 25s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 17s
ROI estimation of 'mori' atlas 22s
ROI estimation of 'anatomy3' atlas 37s
ROI estimation of 'julichbrain' atlas 56s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 38s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 62s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 82s
Write results 84s
449s
Quality check 12s
/var/lib/condor/execute/dir_1233996/ds/sub-865293/report/catreport_sub-865293_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 26 second(s).
Image Quality Rating (IQR): 86.70% (B+)
GM volume (GMV): 45.82% (619.30 / 1351.47 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233996/ds/sub-865293/mri
Reports are saved in /var/lib/condor/execute/dir_1233996/ds/sub-865293/report
Labels are saved in /var/lib/condor/execute/dir_1233996/ds/sub-865293/label
------------------------------------------------------------------------
22-Oct-2025 01:59:34 - Done 'CAT12: Segmentation'
22-Oct-2025 01:59:34 - Done
Bye for now...
get(ok): sourcedata/raw/sub-865293/anat/sub-865293_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-865293/label/catROI_sub-865293_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-865293/label/catROI_sub-865293_acq-standard_T1w.mat (file)
unlock(ok): sub-865293/mri/it_sub-865293_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-865293/mri/it_sub-865293_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-865293/mri/it_sub-865293_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-865293/mri/it_sub-865293_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-865293/mri/m0wp1sub-865293_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-865293/mri/m0wp1sub-865293_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-865293/mri/mwp1sub-865293_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-865293/mri/mwp1sub-865293_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-865293/mri/p0sub-865293_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-865293/mri/p0sub-865293_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-865293/mri/t_sub-865293_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-865293/mri/t_sub-865293_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-865293/mri/t_sub-865293_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-865293/mri/t_sub-865293_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-865293/mri/wp0sub-865293_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-865293/mri/wp0sub-865293_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-865293/report/cat_sub-865293_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-865293/report/cat_sub-865293_acq-standard_T1w.mat (file)
unlock(ok): sub-865293/report/catreport_sub-865293_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-865293/report/catreport_sub-865293_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233996/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-865293/label/catROI_sub-865293_acq-headmotion2_T1w.mat (file)
add(ok): sub-865293/label/catROI_sub-865293_acq-headmotion2_T1w.xml (file)
add(ok): sub-865293/mri/it_sub-865293_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-865293/mri/it_sub-865293_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-865293/mri/m0wp1sub-865293_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-865293/mri/mwp1sub-865293_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-865293/mri/p0sub-865293_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-865293/mri/t_sub-865293_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-865293/mri/t_sub-865293_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-865293/mri/wp0sub-865293_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-865293/report/cat_sub-865293_acq-headmotion2_T1w.mat (file)
add(ok): sub-865293/report/cat_sub-865293_acq-headmotion2_T1w.xml (file)
add(ok): sub-865293/report/catlog_sub-865293_acq-headmotion2_T1w.txt (file)
add(ok): sub-865293/report/catreport_sub-865293_acq-headmotion2_T1w.pdf (file)
add(ok): sub-865293/label/catROI_sub-865293_acq-headmotion1_T1w.mat (file)
add(ok): sub-865293/label/catROI_sub-865293_acq-standard_T1w.mat (file)
add(ok): sub-865293/mri/it_sub-865293_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-865293/mri/it_sub-865293_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-865293/mri/it_sub-865293_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-865293/mri/it_sub-865293_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-865293/mri/m0wp1sub-865293_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-865293/mri/m0wp1sub-865293_acq-standard_T1w.nii.gz (file)
add(ok): sub-865293/mri/mwp1sub-865293_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-865293/mri/mwp1sub-865293_acq-standard_T1w.nii.gz (file)
add(ok): sub-865293/mri/p0sub-865293_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-865293/mri/p0sub-865293_acq-standard_T1w.nii.gz (file)
add(ok): sub-865293/mri/t_sub-865293_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-865293/mri/t_sub-865293_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-865293/mri/t_sub-865293_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-865293/mri/t_sub-865293_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-865293/mri/wp0sub-865293_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-865293/mri/wp0sub-865293_acq-standard_T1w.nii.gz (file)
add(ok): sub-865293/report/cat_sub-865293_acq-headmotion1_T1w.mat (file)
add(ok): sub-865293/report/cat_sub-865293_acq-standard_T1w.mat (file)
add(ok): sub-865293/report/catreport_sub-865293_acq-headmotion1_T1w.pdf (file)
add(ok): sub-865293/report/catreport_sub-865293_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-865293/label/catROI_sub-865293_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/label/catROI_sub-865293_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/label/catROI_sub-865293_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/it_sub-865293_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/it_sub-865293_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/it_sub-865293_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/it_sub-865293_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/it_sub-865293_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/it_sub-865293_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/m0wp1sub-865293_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/m0wp1sub-865293_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/m0wp1sub-865293_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/mwp1sub-865293_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/mwp1sub-865293_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/mwp1sub-865293_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/p0sub-865293_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/p0sub-865293_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/p0sub-865293_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/t_sub-865293_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/t_sub-865293_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/t_sub-865293_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/t_sub-865293_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/t_sub-865293_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/t_sub-865293_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/wp0sub-865293_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/wp0sub-865293_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-865293/mri/wp0sub-865293_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-865293/report/cat_sub-865293_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/report/cat_sub-865293_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/report/cat_sub-865293_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-865293/report/catreport_sub-865293_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-865293/report/catreport_sub-865293_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-865293/report/catreport_sub-865293_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000582 seconds
flock: executing git
SUCCESS
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