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ds004173-catqc/logs/10071058.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1233984/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1233984/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233984/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:28 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:28 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233984/ds/sub-468609/sub-468609_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-468609/sub-468609_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 49s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
74s
SPM preprocessing 1 (estimate 2): 53s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 42s
Update probability maps 8s
85s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 6s
100s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
91s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 17s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 59s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
115s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
8s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 20s
ROI estimation of 'anatomy3' atlas 32s
ROI estimation of 'julichbrain' atlas 42s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 72s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 105s
Write results 107s
426s
Quality check 13s
/var/lib/condor/execute/dir_1233984/ds/sub-468609/report/catreport_sub-468609_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 54 second(s).
Image Quality Rating (IQR): 78.32% (C+)
GM volume (GMV): 47.66% (627.68 / 1317.07 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233984/ds/sub-468609/mri
Reports are saved in /var/lib/condor/execute/dir_1233984/ds/sub-468609/report
Labels are saved in /var/lib/condor/execute/dir_1233984/ds/sub-468609/label
------------------------------------------------------------------------
22-Oct-2025 01:03:24 - Done 'CAT12: Segmentation'
22-Oct-2025 01:03:24 - Done
Bye for now...
get(ok): sourcedata/raw/sub-468609/anat/sub-468609_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233984/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1233984/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-468609/label/catROI_sub-468609_acq-headmotion1_T1w.mat (file)
add(ok): sub-468609/label/catROI_sub-468609_acq-headmotion1_T1w.xml (file)
add(ok): sub-468609/mri/it_sub-468609_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-468609/mri/it_sub-468609_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-468609/mri/m0wp1sub-468609_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-468609/mri/mwp1sub-468609_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-468609/mri/p0sub-468609_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-468609/mri/t_sub-468609_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-468609/mri/t_sub-468609_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-468609/mri/wp0sub-468609_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-468609/report/cat_sub-468609_acq-headmotion1_T1w.mat (file)
add(ok): sub-468609/report/cat_sub-468609_acq-headmotion1_T1w.xml (file)
add(ok): sub-468609/report/catlog_sub-468609_acq-headmotion1_T1w.txt (file)
add(ok): sub-468609/report/catreport_sub-468609_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:04:16 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:04:17 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233984/ds/sub-468609/sub-468609_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-468609/sub-468609_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 53s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
74s
SPM preprocessing 1 (estimate 2): 49s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 8s
83s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 10s
106s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
90s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 16s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 54s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
109s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
6s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 14s
ROI estimation of 'anatomy3' atlas 20s
ROI estimation of 'julichbrain' atlas 27s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 53s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 80s
Write results 82s
324s
Quality check 13s
/var/lib/condor/execute/dir_1233984/ds/sub-468609/report/catreport_sub-468609_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 20 minute(s) and 34 second(s).
Image Quality Rating (IQR): 80.35% (B-)
GM volume (GMV): 47.56% (624.28 / 1312.70 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233984/ds/sub-468609/mri
Reports are saved in /var/lib/condor/execute/dir_1233984/ds/sub-468609/report
Labels are saved in /var/lib/condor/execute/dir_1233984/ds/sub-468609/label
------------------------------------------------------------------------
22-Oct-2025 01:24:53 - Done 'CAT12: Segmentation'
22-Oct-2025 01:24:53 - Done
Bye for now...
get(ok): sourcedata/raw/sub-468609/anat/sub-468609_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-468609/label/catROI_sub-468609_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-468609/mri/it_sub-468609_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-468609/mri/it_sub-468609_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-468609/mri/m0wp1sub-468609_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-468609/mri/mwp1sub-468609_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-468609/mri/p0sub-468609_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-468609/mri/t_sub-468609_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-468609/mri/t_sub-468609_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-468609/mri/wp0sub-468609_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-468609/report/cat_sub-468609_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-468609/report/catreport_sub-468609_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233984/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-468609/label/catROI_sub-468609_acq-headmotion2_T1w.mat (file)
add(ok): sub-468609/label/catROI_sub-468609_acq-headmotion2_T1w.xml (file)
add(ok): sub-468609/mri/it_sub-468609_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-468609/mri/it_sub-468609_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-468609/mri/m0wp1sub-468609_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-468609/mri/mwp1sub-468609_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-468609/mri/p0sub-468609_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-468609/mri/t_sub-468609_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-468609/mri/t_sub-468609_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-468609/mri/wp0sub-468609_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-468609/report/cat_sub-468609_acq-headmotion2_T1w.mat (file)
add(ok): sub-468609/report/cat_sub-468609_acq-headmotion2_T1w.xml (file)
add(ok): sub-468609/report/catlog_sub-468609_acq-headmotion2_T1w.txt (file)
add(ok): sub-468609/report/catreport_sub-468609_acq-headmotion2_T1w.pdf (file)
add(ok): sub-468609/label/catROI_sub-468609_acq-headmotion1_T1w.mat (file)
add(ok): sub-468609/mri/it_sub-468609_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-468609/mri/it_sub-468609_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-468609/mri/m0wp1sub-468609_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-468609/mri/mwp1sub-468609_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-468609/mri/p0sub-468609_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-468609/mri/t_sub-468609_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-468609/mri/t_sub-468609_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-468609/mri/wp0sub-468609_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-468609/report/cat_sub-468609_acq-headmotion1_T1w.mat (file)
add(ok): sub-468609/report/catreport_sub-468609_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:25:46 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:25:46 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233984/ds/sub-468609/sub-468609_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-468609/sub-468609_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 55s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 7s
45s
Correct center-of-mass 7s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
75s
SPM preprocessing 1 (estimate 2): 53s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 43s
Update probability maps 9s
85s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 11s
113s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.01) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
91s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 18s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 60s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
117s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 14s
ROI estimation of 'anatomy3' atlas 20s
ROI estimation of 'julichbrain' atlas 27s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 67s
Write results 69s
304s
Quality check 13s
/var/lib/condor/execute/dir_1233984/ds/sub-468609/report/catreport_sub-468609_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 14 second(s).
Image Quality Rating (IQR): 85.58% (B)
GM volume (GMV): 48.24% (637.40 / 1321.25 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233984/ds/sub-468609/mri
Reports are saved in /var/lib/condor/execute/dir_1233984/ds/sub-468609/report
Labels are saved in /var/lib/condor/execute/dir_1233984/ds/sub-468609/label
------------------------------------------------------------------------
22-Oct-2025 01:47:03 - Done 'CAT12: Segmentation'
22-Oct-2025 01:47:03 - Done
Bye for now...
get(ok): sourcedata/raw/sub-468609/anat/sub-468609_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-468609/label/catROI_sub-468609_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-468609/label/catROI_sub-468609_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-468609/mri/it_sub-468609_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-468609/mri/it_sub-468609_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-468609/mri/it_sub-468609_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-468609/mri/it_sub-468609_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-468609/mri/m0wp1sub-468609_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-468609/mri/m0wp1sub-468609_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-468609/mri/mwp1sub-468609_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-468609/mri/mwp1sub-468609_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-468609/mri/p0sub-468609_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-468609/mri/p0sub-468609_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-468609/mri/t_sub-468609_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-468609/mri/t_sub-468609_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-468609/mri/t_sub-468609_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-468609/mri/t_sub-468609_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-468609/mri/wp0sub-468609_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-468609/mri/wp0sub-468609_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-468609/report/cat_sub-468609_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-468609/report/cat_sub-468609_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-468609/report/catreport_sub-468609_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-468609/report/catreport_sub-468609_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233984/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-468609/label/catROI_sub-468609_acq-standard_T1w.mat (file)
add(ok): sub-468609/label/catROI_sub-468609_acq-standard_T1w.xml (file)
add(ok): sub-468609/mri/it_sub-468609_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-468609/mri/it_sub-468609_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-468609/mri/m0wp1sub-468609_acq-standard_T1w.nii.gz (file)
add(ok): sub-468609/mri/mwp1sub-468609_acq-standard_T1w.nii.gz (file)
add(ok): sub-468609/mri/p0sub-468609_acq-standard_T1w.nii.gz (file)
add(ok): sub-468609/mri/t_sub-468609_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-468609/mri/t_sub-468609_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-468609/mri/wp0sub-468609_acq-standard_T1w.nii.gz (file)
add(ok): sub-468609/report/cat_sub-468609_acq-standard_T1w.mat (file)
add(ok): sub-468609/report/cat_sub-468609_acq-standard_T1w.xml (file)
add(ok): sub-468609/report/catlog_sub-468609_acq-standard_T1w.txt (file)
add(ok): sub-468609/report/catreport_sub-468609_acq-standard_T1w.pdf (file)
add(ok): sub-468609/label/catROI_sub-468609_acq-headmotion1_T1w.mat (file)
add(ok): sub-468609/label/catROI_sub-468609_acq-headmotion2_T1w.mat (file)
add(ok): sub-468609/mri/it_sub-468609_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-468609/mri/it_sub-468609_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-468609/mri/it_sub-468609_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-468609/mri/it_sub-468609_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-468609/mri/m0wp1sub-468609_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-468609/mri/m0wp1sub-468609_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-468609/mri/mwp1sub-468609_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-468609/mri/mwp1sub-468609_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-468609/mri/p0sub-468609_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-468609/mri/p0sub-468609_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-468609/mri/t_sub-468609_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-468609/mri/t_sub-468609_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-468609/mri/t_sub-468609_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-468609/mri/t_sub-468609_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-468609/mri/wp0sub-468609_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-468609/mri/wp0sub-468609_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-468609/report/cat_sub-468609_acq-headmotion1_T1w.mat (file)
add(ok): sub-468609/report/cat_sub-468609_acq-headmotion2_T1w.mat (file)
add(ok): sub-468609/report/catreport_sub-468609_acq-headmotion1_T1w.pdf (file)
add(ok): sub-468609/report/catreport_sub-468609_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-468609/label/catROI_sub-468609_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/label/catROI_sub-468609_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/label/catROI_sub-468609_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/it_sub-468609_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/it_sub-468609_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/it_sub-468609_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/it_sub-468609_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/it_sub-468609_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/it_sub-468609_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/m0wp1sub-468609_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/m0wp1sub-468609_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/m0wp1sub-468609_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/mwp1sub-468609_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/mwp1sub-468609_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/mwp1sub-468609_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/p0sub-468609_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/p0sub-468609_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/p0sub-468609_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/t_sub-468609_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/t_sub-468609_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/t_sub-468609_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/t_sub-468609_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/t_sub-468609_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/t_sub-468609_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/wp0sub-468609_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/wp0sub-468609_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-468609/mri/wp0sub-468609_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-468609/report/cat_sub-468609_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/report/cat_sub-468609_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/report/cat_sub-468609_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-468609/report/catreport_sub-468609_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-468609/report/catreport_sub-468609_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-468609/report/catreport_sub-468609_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001039 seconds
flock: executing git
SUCCESS
View git blame Copy permalink