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ds004173-catqc/logs/10071056.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1233965/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1233965/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233965/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:31 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:31 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233965/ds/sub-000183/sub-000183_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-000183/sub-000183_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 62s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
45s
Correct center-of-mass 3s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
83s
SPM preprocessing 1 (estimate 2): 72s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 44s
Update probability maps 8s
90s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 5s
101s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.04) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
99s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 20s
Ventricle detection 18s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 66s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
131s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
7s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 17s
ROI estimation of 'neuromorphometrics' atlas 64s
ROI estimation of 'lpba40' atlas 19s
ROI estimation of 'hammers' atlas 45s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 17s
ROI estimation of 'aal3' atlas 28s
ROI estimation of 'mori' atlas 41s
ROI estimation of 'anatomy3' atlas 57s
ROI estimation of 'julichbrain' atlas 65s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 43s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 70s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 86s
Write results 88s
604s
Quality check 15s
/var/lib/condor/execute/dir_1233965/ds/sub-000183/report/catreport_sub-000183_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 55 second(s).
Image Quality Rating (IQR): 87.92% (B+)
GM volume (GMV): 47.50% (777.16 / 1636.23 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233965/ds/sub-000183/mri
Reports are saved in /var/lib/condor/execute/dir_1233965/ds/sub-000183/report
Labels are saved in /var/lib/condor/execute/dir_1233965/ds/sub-000183/label
------------------------------------------------------------------------
22-Oct-2025 01:08:29 - Done 'CAT12: Segmentation'
22-Oct-2025 01:08:29 - Done
Bye for now...
get(ok): sourcedata/raw/sub-000183/anat/sub-000183_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233965/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1233965/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-000183/label/catROI_sub-000183_acq-standard_T1w.mat (file)
add(ok): sub-000183/label/catROI_sub-000183_acq-standard_T1w.xml (file)
add(ok): sub-000183/mri/it_sub-000183_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000183/mri/it_sub-000183_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000183/mri/m0wp1sub-000183_acq-standard_T1w.nii.gz (file)
add(ok): sub-000183/mri/mwp1sub-000183_acq-standard_T1w.nii.gz (file)
add(ok): sub-000183/mri/p0sub-000183_acq-standard_T1w.nii.gz (file)
add(ok): sub-000183/mri/t_sub-000183_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000183/mri/t_sub-000183_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000183/mri/wp0sub-000183_acq-standard_T1w.nii.gz (file)
add(ok): sub-000183/report/cat_sub-000183_acq-standard_T1w.mat (file)
add(ok): sub-000183/report/cat_sub-000183_acq-standard_T1w.xml (file)
add(ok): sub-000183/report/catlog_sub-000183_acq-standard_T1w.txt (file)
add(ok): sub-000183/report/catreport_sub-000183_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:09:12 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:09:12 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233965/ds/sub-000183/sub-000183_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-000183/sub-000183_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 64s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 9s
48s
Correct center-of-mass 3s
Affine registration 12s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 95s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 46s
Update probability maps 8s
91s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 6s
100s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
100s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 20s
Ventricle detection 19s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 66s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
132s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
7s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 46s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 26s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 21s
ROI estimation of 'anatomy3' atlas 31s
ROI estimation of 'julichbrain' atlas 43s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 17s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 61s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 73s
Write results 75s
425s
Quality check 15s
/var/lib/condor/execute/dir_1233965/ds/sub-000183/report/catreport_sub-000183_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 10 second(s).
Image Quality Rating (IQR): 83.49% (B)
GM volume (GMV): 46.51% (748.83 / 1609.88 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233965/ds/sub-000183/mri
Reports are saved in /var/lib/condor/execute/dir_1233965/ds/sub-000183/report
Labels are saved in /var/lib/condor/execute/dir_1233965/ds/sub-000183/label
------------------------------------------------------------------------
22-Oct-2025 01:35:24 - Done 'CAT12: Segmentation'
22-Oct-2025 01:35:24 - Done
Bye for now...
get(ok): sourcedata/raw/sub-000183/anat/sub-000183_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-000183/label/catROI_sub-000183_acq-standard_T1w.mat (file)
unlock(ok): sub-000183/mri/it_sub-000183_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-000183/mri/it_sub-000183_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000183/mri/m0wp1sub-000183_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000183/mri/mwp1sub-000183_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000183/mri/p0sub-000183_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000183/mri/t_sub-000183_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-000183/mri/t_sub-000183_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000183/mri/wp0sub-000183_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000183/report/cat_sub-000183_acq-standard_T1w.mat (file)
unlock(ok): sub-000183/report/catreport_sub-000183_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233965/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-000183/label/catROI_sub-000183_acq-headmotion2_T1w.mat (file)
add(ok): sub-000183/label/catROI_sub-000183_acq-headmotion2_T1w.xml (file)
add(ok): sub-000183/mri/it_sub-000183_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000183/mri/it_sub-000183_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000183/mri/m0wp1sub-000183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000183/mri/mwp1sub-000183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000183/mri/p0sub-000183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000183/mri/t_sub-000183_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000183/mri/t_sub-000183_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000183/mri/wp0sub-000183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000183/report/cat_sub-000183_acq-headmotion2_T1w.mat (file)
add(ok): sub-000183/report/cat_sub-000183_acq-headmotion2_T1w.xml (file)
add(ok): sub-000183/report/catlog_sub-000183_acq-headmotion2_T1w.txt (file)
add(ok): sub-000183/report/catreport_sub-000183_acq-headmotion2_T1w.pdf (file)
add(ok): sub-000183/label/catROI_sub-000183_acq-standard_T1w.mat (file)
add(ok): sub-000183/mri/it_sub-000183_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000183/mri/it_sub-000183_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000183/mri/m0wp1sub-000183_acq-standard_T1w.nii.gz (file)
add(ok): sub-000183/mri/mwp1sub-000183_acq-standard_T1w.nii.gz (file)
add(ok): sub-000183/mri/p0sub-000183_acq-standard_T1w.nii.gz (file)
add(ok): sub-000183/mri/t_sub-000183_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000183/mri/t_sub-000183_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000183/mri/wp0sub-000183_acq-standard_T1w.nii.gz (file)
add(ok): sub-000183/report/cat_sub-000183_acq-standard_T1w.mat (file)
add(ok): sub-000183/report/catreport_sub-000183_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:36:08 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:36:08 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233965/ds/sub-000183/sub-000183_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-000183/sub-000183_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 7s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
44s
Correct center-of-mass 3s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
79s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 43s
Update probability maps 8s
88s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 7s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.02) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
100s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 24s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 66s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
136s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 31s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 14s
ROI estimation of 'mori' atlas 19s
ROI estimation of 'anatomy3' atlas 27s
ROI estimation of 'julichbrain' atlas 32s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 66s
Write results 68s
342s
Quality check 13s
/var/lib/condor/execute/dir_1233965/ds/sub-000183/report/catreport_sub-000183_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 25 second(s).
Image Quality Rating (IQR): 87.23% (B+)
GM volume (GMV): 47.10% (753.22 / 1599.26 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233965/ds/sub-000183/mri
Reports are saved in /var/lib/condor/execute/dir_1233965/ds/sub-000183/report
Labels are saved in /var/lib/condor/execute/dir_1233965/ds/sub-000183/label
------------------------------------------------------------------------
22-Oct-2025 01:59:36 - Done 'CAT12: Segmentation'
22-Oct-2025 01:59:36 - Done
Bye for now...
get(ok): sourcedata/raw/sub-000183/anat/sub-000183_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-000183/label/catROI_sub-000183_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-000183/label/catROI_sub-000183_acq-standard_T1w.mat (file)
unlock(ok): sub-000183/mri/it_sub-000183_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-000183/mri/it_sub-000183_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000183/mri/it_sub-000183_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-000183/mri/it_sub-000183_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000183/mri/m0wp1sub-000183_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000183/mri/m0wp1sub-000183_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000183/mri/mwp1sub-000183_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000183/mri/mwp1sub-000183_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000183/mri/p0sub-000183_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000183/mri/p0sub-000183_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000183/mri/t_sub-000183_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-000183/mri/t_sub-000183_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000183/mri/t_sub-000183_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-000183/mri/t_sub-000183_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000183/mri/wp0sub-000183_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000183/mri/wp0sub-000183_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000183/report/cat_sub-000183_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-000183/report/cat_sub-000183_acq-standard_T1w.mat (file)
unlock(ok): sub-000183/report/catreport_sub-000183_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-000183/report/catreport_sub-000183_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233965/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-000183/label/catROI_sub-000183_acq-headmotion1_T1w.mat (file)
add(ok): sub-000183/label/catROI_sub-000183_acq-headmotion1_T1w.xml (file)
add(ok): sub-000183/mri/it_sub-000183_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-000183/mri/it_sub-000183_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-000183/mri/m0wp1sub-000183_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000183/mri/mwp1sub-000183_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000183/mri/p0sub-000183_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000183/mri/t_sub-000183_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-000183/mri/t_sub-000183_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-000183/mri/wp0sub-000183_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000183/report/cat_sub-000183_acq-headmotion1_T1w.mat (file)
add(ok): sub-000183/report/cat_sub-000183_acq-headmotion1_T1w.xml (file)
add(ok): sub-000183/report/catlog_sub-000183_acq-headmotion1_T1w.txt (file)
add(ok): sub-000183/report/catreport_sub-000183_acq-headmotion1_T1w.pdf (file)
add(ok): sub-000183/label/catROI_sub-000183_acq-headmotion2_T1w.mat (file)
add(ok): sub-000183/label/catROI_sub-000183_acq-standard_T1w.mat (file)
add(ok): sub-000183/mri/it_sub-000183_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000183/mri/it_sub-000183_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000183/mri/it_sub-000183_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000183/mri/it_sub-000183_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000183/mri/m0wp1sub-000183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000183/mri/m0wp1sub-000183_acq-standard_T1w.nii.gz (file)
add(ok): sub-000183/mri/mwp1sub-000183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000183/mri/mwp1sub-000183_acq-standard_T1w.nii.gz (file)
add(ok): sub-000183/mri/p0sub-000183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000183/mri/p0sub-000183_acq-standard_T1w.nii.gz (file)
add(ok): sub-000183/mri/t_sub-000183_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000183/mri/t_sub-000183_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000183/mri/t_sub-000183_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000183/mri/t_sub-000183_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000183/mri/wp0sub-000183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000183/mri/wp0sub-000183_acq-standard_T1w.nii.gz (file)
add(ok): sub-000183/report/cat_sub-000183_acq-headmotion2_T1w.mat (file)
add(ok): sub-000183/report/cat_sub-000183_acq-standard_T1w.mat (file)
add(ok): sub-000183/report/catreport_sub-000183_acq-headmotion2_T1w.pdf (file)
add(ok): sub-000183/report/catreport_sub-000183_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-000183/label/catROI_sub-000183_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/label/catROI_sub-000183_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/label/catROI_sub-000183_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/it_sub-000183_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/it_sub-000183_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/it_sub-000183_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/it_sub-000183_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/it_sub-000183_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/it_sub-000183_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/m0wp1sub-000183_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/m0wp1sub-000183_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/m0wp1sub-000183_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/mwp1sub-000183_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/mwp1sub-000183_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/mwp1sub-000183_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/p0sub-000183_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/p0sub-000183_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/p0sub-000183_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/t_sub-000183_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/t_sub-000183_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/t_sub-000183_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/t_sub-000183_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/t_sub-000183_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/t_sub-000183_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/wp0sub-000183_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/wp0sub-000183_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000183/mri/wp0sub-000183_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000183/report/cat_sub-000183_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/report/cat_sub-000183_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/report/cat_sub-000183_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000183/report/catreport_sub-000183_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-000183/report/catreport_sub-000183_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-000183/report/catreport_sub-000183_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.200400 seconds
flock: executing git
SUCCESS
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