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ds004173-catqc/logs/10071054.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1233945/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1233945/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233945/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:31 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:31 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233945/ds/sub-367500/sub-367500_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-367500/sub-367500_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 7s
43s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
83s
SPM preprocessing 1 (estimate 2): 50s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 8s
87s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 9s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
97s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 71s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
130s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 36s
ROI estimation of 'lpba40' atlas 17s
ROI estimation of 'hammers' atlas 45s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 17s
ROI estimation of 'aal3' atlas 28s
ROI estimation of 'mori' atlas 40s
ROI estimation of 'anatomy3' atlas 58s
ROI estimation of 'julichbrain' atlas 79s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 10s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 51s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 85s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 95s
Write results 98s
615s
Quality check 15s
/var/lib/condor/execute/dir_1233945/ds/sub-367500/report/catreport_sub-367500_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 18 second(s).
Image Quality Rating (IQR): 87.23% (B+)
GM volume (GMV): 46.61% (676.77 / 1451.87 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233945/ds/sub-367500/mri
Reports are saved in /var/lib/condor/execute/dir_1233945/ds/sub-367500/report
Labels are saved in /var/lib/condor/execute/dir_1233945/ds/sub-367500/label
------------------------------------------------------------------------
22-Oct-2025 01:07:51 - Done 'CAT12: Segmentation'
22-Oct-2025 01:07:51 - Done
Bye for now...
get(ok): sourcedata/raw/sub-367500/anat/sub-367500_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233945/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1233945/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-367500/label/catROI_sub-367500_acq-headmotion1_T1w.mat (file)
add(ok): sub-367500/label/catROI_sub-367500_acq-headmotion1_T1w.xml (file)
add(ok): sub-367500/mri/it_sub-367500_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-367500/mri/it_sub-367500_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-367500/mri/m0wp1sub-367500_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-367500/mri/mwp1sub-367500_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-367500/mri/p0sub-367500_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-367500/mri/t_sub-367500_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-367500/mri/t_sub-367500_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-367500/mri/wp0sub-367500_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-367500/report/cat_sub-367500_acq-headmotion1_T1w.mat (file)
add(ok): sub-367500/report/cat_sub-367500_acq-headmotion1_T1w.xml (file)
add(ok): sub-367500/report/catlog_sub-367500_acq-headmotion1_T1w.txt (file)
add(ok): sub-367500/report/catreport_sub-367500_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:08:40 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:08:40 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233945/ds/sub-367500/sub-367500_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-367500/sub-367500_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 62s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
40s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 47s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 8s
85s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 3s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
99s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 21s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 68s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
132s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 31s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 17s
ROI estimation of 'anatomy3' atlas 35s
ROI estimation of 'julichbrain' atlas 52s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 19s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 33s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 69s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 103s
Write results 106s
440s
Quality check 15s
/var/lib/condor/execute/dir_1233945/ds/sub-367500/report/catreport_sub-367500_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 34 second(s).
Image Quality Rating (IQR): 88.11% (B+)
GM volume (GMV): 48.49% (713.51 / 1471.38 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233945/ds/sub-367500/mri
Reports are saved in /var/lib/condor/execute/dir_1233945/ds/sub-367500/report
Labels are saved in /var/lib/condor/execute/dir_1233945/ds/sub-367500/label
------------------------------------------------------------------------
22-Oct-2025 01:33:17 - Done 'CAT12: Segmentation'
22-Oct-2025 01:33:17 - Done
Bye for now...
get(ok): sourcedata/raw/sub-367500/anat/sub-367500_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-367500/label/catROI_sub-367500_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-367500/mri/it_sub-367500_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-367500/mri/it_sub-367500_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-367500/mri/m0wp1sub-367500_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-367500/mri/mwp1sub-367500_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-367500/mri/p0sub-367500_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-367500/mri/t_sub-367500_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-367500/mri/t_sub-367500_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-367500/mri/wp0sub-367500_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-367500/report/cat_sub-367500_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-367500/report/catreport_sub-367500_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233945/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-367500/label/catROI_sub-367500_acq-standard_T1w.mat (file)
add(ok): sub-367500/label/catROI_sub-367500_acq-standard_T1w.xml (file)
add(ok): sub-367500/mri/it_sub-367500_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-367500/mri/it_sub-367500_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-367500/mri/m0wp1sub-367500_acq-standard_T1w.nii.gz (file)
add(ok): sub-367500/mri/mwp1sub-367500_acq-standard_T1w.nii.gz (file)
add(ok): sub-367500/mri/p0sub-367500_acq-standard_T1w.nii.gz (file)
add(ok): sub-367500/mri/t_sub-367500_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-367500/mri/t_sub-367500_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-367500/mri/wp0sub-367500_acq-standard_T1w.nii.gz (file)
add(ok): sub-367500/report/cat_sub-367500_acq-standard_T1w.mat (file)
add(ok): sub-367500/report/cat_sub-367500_acq-standard_T1w.xml (file)
add(ok): sub-367500/report/catlog_sub-367500_acq-standard_T1w.txt (file)
add(ok): sub-367500/report/catreport_sub-367500_acq-standard_T1w.pdf (file)
add(ok): sub-367500/label/catROI_sub-367500_acq-headmotion1_T1w.mat (file)
add(ok): sub-367500/mri/it_sub-367500_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-367500/mri/it_sub-367500_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-367500/mri/m0wp1sub-367500_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-367500/mri/mwp1sub-367500_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-367500/mri/p0sub-367500_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-367500/mri/t_sub-367500_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-367500/mri/t_sub-367500_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-367500/mri/wp0sub-367500_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-367500/report/cat_sub-367500_acq-headmotion1_T1w.mat (file)
add(ok): sub-367500/report/catreport_sub-367500_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:34:16 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:34:17 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233945/ds/sub-367500/sub-367500_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-367500/sub-367500_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 61s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
73s
SPM preprocessing 1 (estimate 2): 57s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
85s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 10s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
97s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 14s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 57s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
113s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 30s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 16s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 28s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 60s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 87s
Write results 90s
354s
Quality check 14s
/var/lib/condor/execute/dir_1233945/ds/sub-367500/report/catreport_sub-367500_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 31 second(s).
Image Quality Rating (IQR): 86.80% (B+)
GM volume (GMV): 47.53% (695.28 / 1462.75 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233945/ds/sub-367500/mri
Reports are saved in /var/lib/condor/execute/dir_1233945/ds/sub-367500/report
Labels are saved in /var/lib/condor/execute/dir_1233945/ds/sub-367500/label
------------------------------------------------------------------------
22-Oct-2025 01:56:51 - Done 'CAT12: Segmentation'
22-Oct-2025 01:56:51 - Done
Bye for now...
get(ok): sourcedata/raw/sub-367500/anat/sub-367500_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-367500/label/catROI_sub-367500_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-367500/label/catROI_sub-367500_acq-standard_T1w.mat (file)
unlock(ok): sub-367500/mri/it_sub-367500_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-367500/mri/it_sub-367500_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-367500/mri/it_sub-367500_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-367500/mri/it_sub-367500_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-367500/mri/m0wp1sub-367500_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-367500/mri/m0wp1sub-367500_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-367500/mri/mwp1sub-367500_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-367500/mri/mwp1sub-367500_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-367500/mri/p0sub-367500_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-367500/mri/p0sub-367500_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-367500/mri/t_sub-367500_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-367500/mri/t_sub-367500_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-367500/mri/t_sub-367500_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-367500/mri/t_sub-367500_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-367500/mri/wp0sub-367500_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-367500/mri/wp0sub-367500_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-367500/report/cat_sub-367500_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-367500/report/cat_sub-367500_acq-standard_T1w.mat (file)
unlock(ok): sub-367500/report/catreport_sub-367500_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-367500/report/catreport_sub-367500_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233945/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-367500/label/catROI_sub-367500_acq-headmotion2_T1w.mat (file)
add(ok): sub-367500/label/catROI_sub-367500_acq-headmotion2_T1w.xml (file)
add(ok): sub-367500/mri/it_sub-367500_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-367500/mri/it_sub-367500_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-367500/mri/m0wp1sub-367500_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-367500/mri/mwp1sub-367500_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-367500/mri/p0sub-367500_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-367500/mri/t_sub-367500_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-367500/mri/t_sub-367500_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-367500/mri/wp0sub-367500_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-367500/report/cat_sub-367500_acq-headmotion2_T1w.mat (file)
add(ok): sub-367500/report/cat_sub-367500_acq-headmotion2_T1w.xml (file)
add(ok): sub-367500/report/catlog_sub-367500_acq-headmotion2_T1w.txt (file)
add(ok): sub-367500/report/catreport_sub-367500_acq-headmotion2_T1w.pdf (file)
add(ok): sub-367500/label/catROI_sub-367500_acq-headmotion1_T1w.mat (file)
add(ok): sub-367500/label/catROI_sub-367500_acq-standard_T1w.mat (file)
add(ok): sub-367500/mri/it_sub-367500_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-367500/mri/it_sub-367500_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-367500/mri/it_sub-367500_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-367500/mri/it_sub-367500_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-367500/mri/m0wp1sub-367500_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-367500/mri/m0wp1sub-367500_acq-standard_T1w.nii.gz (file)
add(ok): sub-367500/mri/mwp1sub-367500_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-367500/mri/mwp1sub-367500_acq-standard_T1w.nii.gz (file)
add(ok): sub-367500/mri/p0sub-367500_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-367500/mri/p0sub-367500_acq-standard_T1w.nii.gz (file)
add(ok): sub-367500/mri/t_sub-367500_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-367500/mri/t_sub-367500_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-367500/mri/t_sub-367500_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-367500/mri/t_sub-367500_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-367500/mri/wp0sub-367500_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-367500/mri/wp0sub-367500_acq-standard_T1w.nii.gz (file)
add(ok): sub-367500/report/cat_sub-367500_acq-headmotion1_T1w.mat (file)
add(ok): sub-367500/report/cat_sub-367500_acq-standard_T1w.mat (file)
add(ok): sub-367500/report/catreport_sub-367500_acq-headmotion1_T1w.pdf (file)
add(ok): sub-367500/report/catreport_sub-367500_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-367500/label/catROI_sub-367500_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/label/catROI_sub-367500_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/label/catROI_sub-367500_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/it_sub-367500_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/it_sub-367500_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/it_sub-367500_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/it_sub-367500_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/it_sub-367500_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/it_sub-367500_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/m0wp1sub-367500_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/m0wp1sub-367500_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/m0wp1sub-367500_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/mwp1sub-367500_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/mwp1sub-367500_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/mwp1sub-367500_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/p0sub-367500_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/p0sub-367500_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/p0sub-367500_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/t_sub-367500_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/t_sub-367500_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/t_sub-367500_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/t_sub-367500_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/t_sub-367500_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/t_sub-367500_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/wp0sub-367500_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/wp0sub-367500_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-367500/mri/wp0sub-367500_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-367500/report/cat_sub-367500_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/report/cat_sub-367500_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/report/cat_sub-367500_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-367500/report/catreport_sub-367500_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-367500/report/catreport_sub-367500_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-367500/report/catreport_sub-367500_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000653 seconds
flock: executing git
SUCCESS
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