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ds004173-catqc/logs/10071050.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1233902/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1233902/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233902/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:29 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:30 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233902/ds/sub-987325/sub-987325_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-987325/sub-987325_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 54s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 7s
43s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
77s
SPM preprocessing 1 (estimate 2): 55s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 8s
86s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 11s
106s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
94s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 16s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 83s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
140s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
6s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 55s
ROI estimation of 'lpba40' atlas 18s
ROI estimation of 'hammers' atlas 46s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 17s
ROI estimation of 'aal3' atlas 27s
ROI estimation of 'mori' atlas 40s
ROI estimation of 'anatomy3' atlas 58s
ROI estimation of 'julichbrain' atlas 62s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 64s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 77s
Write results 78s
560s
Quality check 13s
/var/lib/condor/execute/dir_1233902/ds/sub-987325/report/catreport_sub-987325_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 53 second(s).
Image Quality Rating (IQR): 87.60% (B+)
GM volume (GMV): 47.23% (656.55 / 1390.03 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233902/ds/sub-987325/mri
Reports are saved in /var/lib/condor/execute/dir_1233902/ds/sub-987325/report
Labels are saved in /var/lib/condor/execute/dir_1233902/ds/sub-987325/label
------------------------------------------------------------------------
22-Oct-2025 01:07:25 - Done 'CAT12: Segmentation'
22-Oct-2025 01:07:25 - Done
Bye for now...
get(ok): sourcedata/raw/sub-987325/anat/sub-987325_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233902/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1233902/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-987325/label/catROI_sub-987325_acq-headmotion1_T1w.mat (file)
add(ok): sub-987325/label/catROI_sub-987325_acq-headmotion1_T1w.xml (file)
add(ok): sub-987325/mri/it_sub-987325_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-987325/mri/it_sub-987325_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-987325/mri/m0wp1sub-987325_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-987325/mri/mwp1sub-987325_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-987325/mri/p0sub-987325_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-987325/mri/t_sub-987325_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-987325/mri/t_sub-987325_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-987325/mri/wp0sub-987325_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-987325/report/cat_sub-987325_acq-headmotion1_T1w.mat (file)
add(ok): sub-987325/report/cat_sub-987325_acq-headmotion1_T1w.xml (file)
add(ok): sub-987325/report/catlog_sub-987325_acq-headmotion1_T1w.txt (file)
add(ok): sub-987325/report/catreport_sub-987325_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:08:11 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:08:11 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233902/ds/sub-987325/sub-987325_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-987325/sub-987325_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
76s
SPM preprocessing 1 (estimate 2): 53s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
86s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 6s
100s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.01) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
94s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 20s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.09) 68s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
130s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 12s
ROI estimation of 'neuromorphometrics' atlas 37s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 25s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 23s
ROI estimation of 'anatomy3' atlas 30s
ROI estimation of 'julichbrain' atlas 47s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 14s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 29s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 55s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 76s
Write results 78s
406s
Quality check 14s
/var/lib/condor/execute/dir_1233902/ds/sub-987325/report/catreport_sub-987325_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 56 second(s).
Image Quality Rating (IQR): 87.28% (B+)
GM volume (GMV): 48.12% (676.34 / 1405.60 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233902/ds/sub-987325/mri
Reports are saved in /var/lib/condor/execute/dir_1233902/ds/sub-987325/report
Labels are saved in /var/lib/condor/execute/dir_1233902/ds/sub-987325/label
------------------------------------------------------------------------
22-Oct-2025 01:33:09 - Done 'CAT12: Segmentation'
22-Oct-2025 01:33:09 - Done
Bye for now...
get(ok): sourcedata/raw/sub-987325/anat/sub-987325_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-987325/label/catROI_sub-987325_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-987325/mri/it_sub-987325_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-987325/mri/it_sub-987325_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-987325/mri/m0wp1sub-987325_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-987325/mri/mwp1sub-987325_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-987325/mri/p0sub-987325_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-987325/mri/t_sub-987325_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-987325/mri/t_sub-987325_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-987325/mri/wp0sub-987325_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-987325/report/cat_sub-987325_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-987325/report/catreport_sub-987325_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233902/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-987325/label/catROI_sub-987325_acq-standard_T1w.mat (file)
add(ok): sub-987325/label/catROI_sub-987325_acq-standard_T1w.xml (file)
add(ok): sub-987325/mri/it_sub-987325_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-987325/mri/it_sub-987325_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-987325/mri/m0wp1sub-987325_acq-standard_T1w.nii.gz (file)
add(ok): sub-987325/mri/mwp1sub-987325_acq-standard_T1w.nii.gz (file)
add(ok): sub-987325/mri/p0sub-987325_acq-standard_T1w.nii.gz (file)
add(ok): sub-987325/mri/t_sub-987325_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-987325/mri/t_sub-987325_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-987325/mri/wp0sub-987325_acq-standard_T1w.nii.gz (file)
add(ok): sub-987325/report/cat_sub-987325_acq-standard_T1w.mat (file)
add(ok): sub-987325/report/cat_sub-987325_acq-standard_T1w.xml (file)
add(ok): sub-987325/report/catlog_sub-987325_acq-standard_T1w.txt (file)
add(ok): sub-987325/report/catreport_sub-987325_acq-standard_T1w.pdf (file)
add(ok): sub-987325/label/catROI_sub-987325_acq-headmotion1_T1w.mat (file)
add(ok): sub-987325/mri/it_sub-987325_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-987325/mri/it_sub-987325_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-987325/mri/m0wp1sub-987325_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-987325/mri/mwp1sub-987325_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-987325/mri/p0sub-987325_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-987325/mri/t_sub-987325_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-987325/mri/t_sub-987325_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-987325/mri/wp0sub-987325_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-987325/report/cat_sub-987325_acq-headmotion1_T1w.mat (file)
add(ok): sub-987325/report/catreport_sub-987325_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:33:55 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:33:55 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233902/ds/sub-987325/sub-987325_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-987325/sub-987325_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 3s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
75s
SPM preprocessing 1 (estimate 2): 51s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 42s
Update probability maps 8s
84s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 3s
95s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
93s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.13) 68s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
128s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 15s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 29s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 53s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 71s
Write results 73s
322s
Quality check 12s
/var/lib/condor/execute/dir_1233902/ds/sub-987325/report/catreport_sub-987325_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 38 second(s).
Image Quality Rating (IQR): 86.10% (B)
GM volume (GMV): 46.85% (654.19 / 1396.23 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233902/ds/sub-987325/mri
Reports are saved in /var/lib/condor/execute/dir_1233902/ds/sub-987325/report
Labels are saved in /var/lib/condor/execute/dir_1233902/ds/sub-987325/label
------------------------------------------------------------------------
22-Oct-2025 01:56:35 - Done 'CAT12: Segmentation'
22-Oct-2025 01:56:35 - Done
Bye for now...
get(ok): sourcedata/raw/sub-987325/anat/sub-987325_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-987325/label/catROI_sub-987325_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-987325/label/catROI_sub-987325_acq-standard_T1w.mat (file)
unlock(ok): sub-987325/mri/it_sub-987325_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-987325/mri/it_sub-987325_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-987325/mri/it_sub-987325_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-987325/mri/it_sub-987325_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-987325/mri/m0wp1sub-987325_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-987325/mri/m0wp1sub-987325_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-987325/mri/mwp1sub-987325_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-987325/mri/mwp1sub-987325_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-987325/mri/p0sub-987325_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-987325/mri/p0sub-987325_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-987325/mri/t_sub-987325_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-987325/mri/t_sub-987325_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-987325/mri/t_sub-987325_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-987325/mri/t_sub-987325_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-987325/mri/wp0sub-987325_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-987325/mri/wp0sub-987325_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-987325/report/cat_sub-987325_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-987325/report/cat_sub-987325_acq-standard_T1w.mat (file)
unlock(ok): sub-987325/report/catreport_sub-987325_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-987325/report/catreport_sub-987325_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233902/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-987325/label/catROI_sub-987325_acq-headmotion2_T1w.mat (file)
add(ok): sub-987325/label/catROI_sub-987325_acq-headmotion2_T1w.xml (file)
add(ok): sub-987325/mri/it_sub-987325_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-987325/mri/it_sub-987325_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-987325/mri/m0wp1sub-987325_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-987325/mri/mwp1sub-987325_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-987325/mri/p0sub-987325_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-987325/mri/t_sub-987325_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-987325/mri/t_sub-987325_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-987325/mri/wp0sub-987325_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-987325/report/cat_sub-987325_acq-headmotion2_T1w.mat (file)
add(ok): sub-987325/report/cat_sub-987325_acq-headmotion2_T1w.xml (file)
add(ok): sub-987325/report/catlog_sub-987325_acq-headmotion2_T1w.txt (file)
add(ok): sub-987325/report/catreport_sub-987325_acq-headmotion2_T1w.pdf (file)
add(ok): sub-987325/label/catROI_sub-987325_acq-headmotion1_T1w.mat (file)
add(ok): sub-987325/label/catROI_sub-987325_acq-standard_T1w.mat (file)
add(ok): sub-987325/mri/it_sub-987325_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-987325/mri/it_sub-987325_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-987325/mri/it_sub-987325_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-987325/mri/it_sub-987325_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-987325/mri/m0wp1sub-987325_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-987325/mri/m0wp1sub-987325_acq-standard_T1w.nii.gz (file)
add(ok): sub-987325/mri/mwp1sub-987325_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-987325/mri/mwp1sub-987325_acq-standard_T1w.nii.gz (file)
add(ok): sub-987325/mri/p0sub-987325_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-987325/mri/p0sub-987325_acq-standard_T1w.nii.gz (file)
add(ok): sub-987325/mri/t_sub-987325_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-987325/mri/t_sub-987325_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-987325/mri/t_sub-987325_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-987325/mri/t_sub-987325_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-987325/mri/wp0sub-987325_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-987325/mri/wp0sub-987325_acq-standard_T1w.nii.gz (file)
add(ok): sub-987325/report/cat_sub-987325_acq-headmotion1_T1w.mat (file)
add(ok): sub-987325/report/cat_sub-987325_acq-standard_T1w.mat (file)
add(ok): sub-987325/report/catreport_sub-987325_acq-headmotion1_T1w.pdf (file)
add(ok): sub-987325/report/catreport_sub-987325_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-987325/label/catROI_sub-987325_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/label/catROI_sub-987325_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/label/catROI_sub-987325_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/it_sub-987325_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/it_sub-987325_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/it_sub-987325_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/it_sub-987325_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/it_sub-987325_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/it_sub-987325_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/m0wp1sub-987325_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/m0wp1sub-987325_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/m0wp1sub-987325_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/mwp1sub-987325_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/mwp1sub-987325_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/mwp1sub-987325_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/p0sub-987325_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/p0sub-987325_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/p0sub-987325_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/t_sub-987325_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/t_sub-987325_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/t_sub-987325_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/t_sub-987325_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/t_sub-987325_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/t_sub-987325_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/wp0sub-987325_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/wp0sub-987325_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-987325/mri/wp0sub-987325_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-987325/report/cat_sub-987325_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/report/cat_sub-987325_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/report/cat_sub-987325_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-987325/report/catreport_sub-987325_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-987325/report/catreport_sub-987325_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-987325/report/catreport_sub-987325_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000952 seconds
flock: executing git
SUCCESS
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