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ds004173-catqc/logs/10071048.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1233887/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1233887/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233887/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:28 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:28 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233887/ds/sub-740606/sub-740606_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-740606/sub-740606_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 56s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
41s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
8s
Use initial fine affine registration. 64s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 8s
84s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 10s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.06) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
89s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 18s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 49s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
105s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
8s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 32s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 14s
ROI estimation of 'mori' atlas 21s
ROI estimation of 'anatomy3' atlas 32s
ROI estimation of 'julichbrain' atlas 43s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 71s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 106s
Write results 108s
438s
Quality check 13s
/var/lib/condor/execute/dir_1233887/ds/sub-740606/report/catreport_sub-740606_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 44 second(s).
Image Quality Rating (IQR): 87.05% (B+)
GM volume (GMV): 45.57% (601.28 / 1319.36 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233887/ds/sub-740606/mri
Reports are saved in /var/lib/condor/execute/dir_1233887/ds/sub-740606/report
Labels are saved in /var/lib/condor/execute/dir_1233887/ds/sub-740606/label
------------------------------------------------------------------------
22-Oct-2025 01:03:15 - Done 'CAT12: Segmentation'
22-Oct-2025 01:03:15 - Done
Bye for now...
get(ok): sourcedata/raw/sub-740606/anat/sub-740606_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1233887/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1233887/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-740606/label/catROI_sub-740606_acq-headmotion2_T1w.mat (file)
add(ok): sub-740606/label/catROI_sub-740606_acq-headmotion2_T1w.xml (file)
add(ok): sub-740606/mri/it_sub-740606_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-740606/mri/it_sub-740606_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-740606/mri/m0wp1sub-740606_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-740606/mri/mwp1sub-740606_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-740606/mri/p0sub-740606_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-740606/mri/t_sub-740606_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-740606/mri/t_sub-740606_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-740606/mri/wp0sub-740606_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-740606/report/cat_sub-740606_acq-headmotion2_T1w.mat (file)
add(ok): sub-740606/report/cat_sub-740606_acq-headmotion2_T1w.xml (file)
add(ok): sub-740606/report/catlog_sub-740606_acq-headmotion2_T1w.txt (file)
add(ok): sub-740606/report/catreport_sub-740606_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:03:58 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:03:58 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233887/ds/sub-740606/sub-740606_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-740606/sub-740606_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 55s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 6s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
8s
Use initial fine affine registration. 65s
SPM preprocessing 1 (estimate 2): 63s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 8s
83s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 10s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.07) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
88s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 17s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 60s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
116s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 15s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 31s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 14s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 29s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 66s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 101s
Write results 103s
373s
Quality check 13s
/var/lib/condor/execute/dir_1233887/ds/sub-740606/report/catreport_sub-740606_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 53 second(s).
Image Quality Rating (IQR): 86.02% (B)
GM volume (GMV): 46.16% (611.55 / 1324.95 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233887/ds/sub-740606/mri
Reports are saved in /var/lib/condor/execute/dir_1233887/ds/sub-740606/report
Labels are saved in /var/lib/condor/execute/dir_1233887/ds/sub-740606/label
------------------------------------------------------------------------
22-Oct-2025 01:25:54 - Done 'CAT12: Segmentation'
22-Oct-2025 01:25:54 - Done
Bye for now...
get(ok): sourcedata/raw/sub-740606/anat/sub-740606_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-740606/label/catROI_sub-740606_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-740606/mri/it_sub-740606_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-740606/mri/it_sub-740606_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-740606/mri/m0wp1sub-740606_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-740606/mri/mwp1sub-740606_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-740606/mri/p0sub-740606_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-740606/mri/t_sub-740606_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-740606/mri/t_sub-740606_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-740606/mri/wp0sub-740606_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-740606/report/cat_sub-740606_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-740606/report/catreport_sub-740606_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233887/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-740606/label/catROI_sub-740606_acq-headmotion1_T1w.mat (file)
add(ok): sub-740606/label/catROI_sub-740606_acq-headmotion1_T1w.xml (file)
add(ok): sub-740606/mri/it_sub-740606_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-740606/mri/it_sub-740606_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-740606/mri/m0wp1sub-740606_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-740606/mri/mwp1sub-740606_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-740606/mri/p0sub-740606_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-740606/mri/t_sub-740606_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-740606/mri/t_sub-740606_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-740606/mri/wp0sub-740606_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-740606/report/cat_sub-740606_acq-headmotion1_T1w.mat (file)
add(ok): sub-740606/report/cat_sub-740606_acq-headmotion1_T1w.xml (file)
add(ok): sub-740606/report/catlog_sub-740606_acq-headmotion1_T1w.txt (file)
add(ok): sub-740606/report/catreport_sub-740606_acq-headmotion1_T1w.pdf (file)
add(ok): sub-740606/label/catROI_sub-740606_acq-headmotion2_T1w.mat (file)
add(ok): sub-740606/mri/it_sub-740606_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-740606/mri/it_sub-740606_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-740606/mri/m0wp1sub-740606_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-740606/mri/mwp1sub-740606_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-740606/mri/p0sub-740606_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-740606/mri/t_sub-740606_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-740606/mri/t_sub-740606_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-740606/mri/wp0sub-740606_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-740606/report/cat_sub-740606_acq-headmotion2_T1w.mat (file)
add(ok): sub-740606/report/catreport_sub-740606_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:26:40 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:26:40 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1233887/ds/sub-740606/sub-740606_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-740606/sub-740606_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
41s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
5s
Use initial fine affine registration. 63s
SPM preprocessing 1 (estimate 2): 60s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
86s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 10s
106s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.05) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
89s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 15s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 57s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
111s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 15s
ROI estimation of 'anatomy3' atlas 21s
ROI estimation of 'julichbrain' atlas 27s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 52s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 79s
Write results 81s
320s
Quality check 13s
/var/lib/condor/execute/dir_1233887/ds/sub-740606/report/catreport_sub-740606_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 13 second(s).
Image Quality Rating (IQR): 87.77% (B+)
GM volume (GMV): 47.59% (629.98 / 1323.80 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1233887/ds/sub-740606/mri
Reports are saved in /var/lib/condor/execute/dir_1233887/ds/sub-740606/report
Labels are saved in /var/lib/condor/execute/dir_1233887/ds/sub-740606/label
------------------------------------------------------------------------
22-Oct-2025 01:47:56 - Done 'CAT12: Segmentation'
22-Oct-2025 01:47:56 - Done
Bye for now...
get(ok): sourcedata/raw/sub-740606/anat/sub-740606_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-740606/label/catROI_sub-740606_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-740606/label/catROI_sub-740606_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-740606/mri/it_sub-740606_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-740606/mri/it_sub-740606_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-740606/mri/it_sub-740606_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-740606/mri/it_sub-740606_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-740606/mri/m0wp1sub-740606_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-740606/mri/m0wp1sub-740606_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-740606/mri/mwp1sub-740606_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-740606/mri/mwp1sub-740606_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-740606/mri/p0sub-740606_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-740606/mri/p0sub-740606_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-740606/mri/t_sub-740606_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-740606/mri/t_sub-740606_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-740606/mri/t_sub-740606_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-740606/mri/t_sub-740606_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-740606/mri/wp0sub-740606_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-740606/mri/wp0sub-740606_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-740606/report/cat_sub-740606_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-740606/report/cat_sub-740606_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-740606/report/catreport_sub-740606_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-740606/report/catreport_sub-740606_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1233887/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-740606/label/catROI_sub-740606_acq-standard_T1w.mat (file)
add(ok): sub-740606/label/catROI_sub-740606_acq-standard_T1w.xml (file)
add(ok): sub-740606/mri/it_sub-740606_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-740606/mri/it_sub-740606_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-740606/mri/m0wp1sub-740606_acq-standard_T1w.nii.gz (file)
add(ok): sub-740606/mri/mwp1sub-740606_acq-standard_T1w.nii.gz (file)
add(ok): sub-740606/mri/p0sub-740606_acq-standard_T1w.nii.gz (file)
add(ok): sub-740606/mri/t_sub-740606_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-740606/mri/t_sub-740606_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-740606/mri/wp0sub-740606_acq-standard_T1w.nii.gz (file)
add(ok): sub-740606/report/cat_sub-740606_acq-standard_T1w.mat (file)
add(ok): sub-740606/report/cat_sub-740606_acq-standard_T1w.xml (file)
add(ok): sub-740606/report/catlog_sub-740606_acq-standard_T1w.txt (file)
add(ok): sub-740606/report/catreport_sub-740606_acq-standard_T1w.pdf (file)
add(ok): sub-740606/label/catROI_sub-740606_acq-headmotion1_T1w.mat (file)
add(ok): sub-740606/label/catROI_sub-740606_acq-headmotion2_T1w.mat (file)
add(ok): sub-740606/mri/it_sub-740606_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-740606/mri/it_sub-740606_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-740606/mri/it_sub-740606_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-740606/mri/it_sub-740606_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-740606/mri/m0wp1sub-740606_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-740606/mri/m0wp1sub-740606_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-740606/mri/mwp1sub-740606_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-740606/mri/mwp1sub-740606_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-740606/mri/p0sub-740606_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-740606/mri/p0sub-740606_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-740606/mri/t_sub-740606_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-740606/mri/t_sub-740606_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-740606/mri/t_sub-740606_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-740606/mri/t_sub-740606_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-740606/mri/wp0sub-740606_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-740606/mri/wp0sub-740606_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-740606/report/cat_sub-740606_acq-headmotion1_T1w.mat (file)
add(ok): sub-740606/report/cat_sub-740606_acq-headmotion2_T1w.mat (file)
add(ok): sub-740606/report/catreport_sub-740606_acq-headmotion1_T1w.pdf (file)
add(ok): sub-740606/report/catreport_sub-740606_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-740606/label/catROI_sub-740606_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/label/catROI_sub-740606_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/label/catROI_sub-740606_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/it_sub-740606_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/it_sub-740606_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/it_sub-740606_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/it_sub-740606_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/it_sub-740606_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/it_sub-740606_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/m0wp1sub-740606_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/m0wp1sub-740606_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/m0wp1sub-740606_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/mwp1sub-740606_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/mwp1sub-740606_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/mwp1sub-740606_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/p0sub-740606_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/p0sub-740606_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/p0sub-740606_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/t_sub-740606_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/t_sub-740606_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/t_sub-740606_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/t_sub-740606_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/t_sub-740606_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/t_sub-740606_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/wp0sub-740606_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/wp0sub-740606_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-740606/mri/wp0sub-740606_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-740606/report/cat_sub-740606_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/report/cat_sub-740606_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/report/cat_sub-740606_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-740606/report/catreport_sub-740606_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-740606/report/catreport_sub-740606_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-740606/report/catreport_sub-740606_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001196 seconds
flock: executing git
SUCCESS
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