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ds004173-catqc/logs/10071045.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_2248000/ds (dataset)
install(ok): /var/lib/condor/execute/dir_2248000/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_2248000/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:38:58 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:38:58 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_2248000/ds/sub-407309/sub-407309_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-407309/sub-407309_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 52s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 5s
37s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
66s
SPM preprocessing 1 (estimate 2): 49s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 39s
Update probability maps 8s
77s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 8s
94s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.17) 12s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 24s
84s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 14s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 56s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
106s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 25s
ROI estimation of 'lpba40' atlas 7s
ROI estimation of 'hammers' atlas 18s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 13s
ROI estimation of 'anatomy3' atlas 19s
ROI estimation of 'julichbrain' atlas 26s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 47s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 63s
Write results 64s
284s
Quality check 11s
/var/lib/condor/execute/dir_2248000/ds/sub-407309/report/catreport_sub-407309_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 19 minute(s) and 12 second(s).
Image Quality Rating (IQR): 81.79% (B-)
GM volume (GMV): 45.82% (612.87 / 1337.64 ml)
Segmentations are saved in /var/lib/condor/execute/dir_2248000/ds/sub-407309/mri
Reports are saved in /var/lib/condor/execute/dir_2248000/ds/sub-407309/report
Labels are saved in /var/lib/condor/execute/dir_2248000/ds/sub-407309/label
------------------------------------------------------------------------
22-Oct-2025 00:58:12 - Done 'CAT12: Segmentation'
22-Oct-2025 00:58:12 - Done
Bye for now...
get(ok): sourcedata/raw/sub-407309/anat/sub-407309_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_2248000/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_2248000/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-407309/label/catROI_sub-407309_acq-headmotion2_T1w.mat (file)
add(ok): sub-407309/label/catROI_sub-407309_acq-headmotion2_T1w.xml (file)
add(ok): sub-407309/mri/it_sub-407309_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-407309/mri/it_sub-407309_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-407309/mri/m0wp1sub-407309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-407309/mri/mwp1sub-407309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-407309/mri/p0sub-407309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-407309/mri/t_sub-407309_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-407309/mri/t_sub-407309_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-407309/mri/wp0sub-407309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-407309/report/cat_sub-407309_acq-headmotion2_T1w.mat (file)
add(ok): sub-407309/report/cat_sub-407309_acq-headmotion2_T1w.xml (file)
add(ok): sub-407309/report/catlog_sub-407309_acq-headmotion2_T1w.txt (file)
add(ok): sub-407309/report/catreport_sub-407309_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:58:50 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:58:50 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_2248000/ds/sub-407309/sub-407309_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-407309/sub-407309_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 51s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 5s
36s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
7s
Use initial fine affine registration. 64s
SPM preprocessing 1 (estimate 2): 49s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 38s
Update probability maps 8s
76s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 9s
95s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.21) 12s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 23s
83s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 14s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 51s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
101s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
11s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 6s
ROI estimation of 'neuromorphometrics' atlas 24s
ROI estimation of 'lpba40' atlas 7s
ROI estimation of 'hammers' atlas 17s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 13s
ROI estimation of 'anatomy3' atlas 19s
ROI estimation of 'julichbrain' atlas 25s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 10s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 45s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 61s
Write results 62s
275s
Quality check 11s
/var/lib/condor/execute/dir_2248000/ds/sub-407309/report/catreport_sub-407309_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 18 minute(s) and 59 second(s).
Image Quality Rating (IQR): 83.22% (B-)
GM volume (GMV): 46.24% (622.04 / 1345.30 ml)
Segmentations are saved in /var/lib/condor/execute/dir_2248000/ds/sub-407309/mri
Reports are saved in /var/lib/condor/execute/dir_2248000/ds/sub-407309/report
Labels are saved in /var/lib/condor/execute/dir_2248000/ds/sub-407309/label
------------------------------------------------------------------------
22-Oct-2025 01:17:51 - Done 'CAT12: Segmentation'
22-Oct-2025 01:17:51 - Done
Bye for now...
get(ok): sourcedata/raw/sub-407309/anat/sub-407309_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-407309/label/catROI_sub-407309_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-407309/mri/it_sub-407309_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-407309/mri/it_sub-407309_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-407309/mri/m0wp1sub-407309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-407309/mri/mwp1sub-407309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-407309/mri/p0sub-407309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-407309/mri/t_sub-407309_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-407309/mri/t_sub-407309_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-407309/mri/wp0sub-407309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-407309/report/cat_sub-407309_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-407309/report/catreport_sub-407309_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_2248000/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-407309/label/catROI_sub-407309_acq-headmotion1_T1w.mat (file)
add(ok): sub-407309/label/catROI_sub-407309_acq-headmotion1_T1w.xml (file)
add(ok): sub-407309/mri/it_sub-407309_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-407309/mri/it_sub-407309_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-407309/mri/m0wp1sub-407309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-407309/mri/mwp1sub-407309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-407309/mri/p0sub-407309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-407309/mri/t_sub-407309_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-407309/mri/t_sub-407309_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-407309/mri/wp0sub-407309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-407309/report/cat_sub-407309_acq-headmotion1_T1w.mat (file)
add(ok): sub-407309/report/cat_sub-407309_acq-headmotion1_T1w.xml (file)
add(ok): sub-407309/report/catlog_sub-407309_acq-headmotion1_T1w.txt (file)
add(ok): sub-407309/report/catreport_sub-407309_acq-headmotion1_T1w.pdf (file)
add(ok): sub-407309/label/catROI_sub-407309_acq-headmotion2_T1w.mat (file)
add(ok): sub-407309/mri/it_sub-407309_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-407309/mri/it_sub-407309_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-407309/mri/m0wp1sub-407309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-407309/mri/mwp1sub-407309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-407309/mri/p0sub-407309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-407309/mri/t_sub-407309_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-407309/mri/t_sub-407309_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-407309/mri/wp0sub-407309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-407309/report/cat_sub-407309_acq-headmotion2_T1w.mat (file)
add(ok): sub-407309/report/catreport_sub-407309_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:18:28 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:18:29 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_2248000/ds/sub-407309/sub-407309_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-407309/sub-407309_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 53s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 5s
36s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
3s
Use initial fine affine registration. 63s
SPM preprocessing 1 (estimate 2): 43s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 38s
Update probability maps 8s
76s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 5s
90s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.25) 13s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 34s
94s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 14s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 66s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
117s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 25s
ROI estimation of 'lpba40' atlas 7s
ROI estimation of 'hammers' atlas 18s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 13s
ROI estimation of 'anatomy3' atlas 18s
ROI estimation of 'julichbrain' atlas 25s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 10s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 45s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 60s
Write results 62s
278s
Quality check 11s
/var/lib/condor/execute/dir_2248000/ds/sub-407309/report/catreport_sub-407309_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 19 minute(s) and 41 second(s).
Image Quality Rating (IQR): 87.67% (B+)
GM volume (GMV): 47.46% (641.92 / 1352.57 ml)
Segmentations are saved in /var/lib/condor/execute/dir_2248000/ds/sub-407309/mri
Reports are saved in /var/lib/condor/execute/dir_2248000/ds/sub-407309/report
Labels are saved in /var/lib/condor/execute/dir_2248000/ds/sub-407309/label
------------------------------------------------------------------------
22-Oct-2025 01:38:12 - Done 'CAT12: Segmentation'
22-Oct-2025 01:38:12 - Done
Bye for now...
get(ok): sourcedata/raw/sub-407309/anat/sub-407309_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-407309/label/catROI_sub-407309_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-407309/label/catROI_sub-407309_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-407309/mri/it_sub-407309_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-407309/mri/it_sub-407309_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-407309/mri/it_sub-407309_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-407309/mri/it_sub-407309_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-407309/mri/m0wp1sub-407309_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-407309/mri/m0wp1sub-407309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-407309/mri/mwp1sub-407309_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-407309/mri/mwp1sub-407309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-407309/mri/p0sub-407309_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-407309/mri/p0sub-407309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-407309/mri/t_sub-407309_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-407309/mri/t_sub-407309_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-407309/mri/t_sub-407309_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-407309/mri/t_sub-407309_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-407309/mri/wp0sub-407309_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-407309/mri/wp0sub-407309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-407309/report/cat_sub-407309_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-407309/report/cat_sub-407309_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-407309/report/catreport_sub-407309_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-407309/report/catreport_sub-407309_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_2248000/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-407309/label/catROI_sub-407309_acq-standard_T1w.mat (file)
add(ok): sub-407309/label/catROI_sub-407309_acq-standard_T1w.xml (file)
add(ok): sub-407309/mri/it_sub-407309_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-407309/mri/it_sub-407309_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-407309/mri/m0wp1sub-407309_acq-standard_T1w.nii.gz (file)
add(ok): sub-407309/mri/mwp1sub-407309_acq-standard_T1w.nii.gz (file)
add(ok): sub-407309/mri/p0sub-407309_acq-standard_T1w.nii.gz (file)
add(ok): sub-407309/mri/t_sub-407309_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-407309/mri/t_sub-407309_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-407309/mri/wp0sub-407309_acq-standard_T1w.nii.gz (file)
add(ok): sub-407309/report/cat_sub-407309_acq-standard_T1w.mat (file)
add(ok): sub-407309/report/cat_sub-407309_acq-standard_T1w.xml (file)
add(ok): sub-407309/report/catlog_sub-407309_acq-standard_T1w.txt (file)
add(ok): sub-407309/report/catreport_sub-407309_acq-standard_T1w.pdf (file)
add(ok): sub-407309/label/catROI_sub-407309_acq-headmotion1_T1w.mat (file)
add(ok): sub-407309/label/catROI_sub-407309_acq-headmotion2_T1w.mat (file)
add(ok): sub-407309/mri/it_sub-407309_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-407309/mri/it_sub-407309_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-407309/mri/it_sub-407309_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-407309/mri/it_sub-407309_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-407309/mri/m0wp1sub-407309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-407309/mri/m0wp1sub-407309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-407309/mri/mwp1sub-407309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-407309/mri/mwp1sub-407309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-407309/mri/p0sub-407309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-407309/mri/p0sub-407309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-407309/mri/t_sub-407309_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-407309/mri/t_sub-407309_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-407309/mri/t_sub-407309_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-407309/mri/t_sub-407309_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-407309/mri/wp0sub-407309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-407309/mri/wp0sub-407309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-407309/report/cat_sub-407309_acq-headmotion1_T1w.mat (file)
add(ok): sub-407309/report/cat_sub-407309_acq-headmotion2_T1w.mat (file)
add(ok): sub-407309/report/catreport_sub-407309_acq-headmotion1_T1w.pdf (file)
add(ok): sub-407309/report/catreport_sub-407309_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-407309/label/catROI_sub-407309_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/label/catROI_sub-407309_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/label/catROI_sub-407309_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/it_sub-407309_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/it_sub-407309_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/it_sub-407309_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/it_sub-407309_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/it_sub-407309_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/it_sub-407309_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/m0wp1sub-407309_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/m0wp1sub-407309_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/m0wp1sub-407309_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/mwp1sub-407309_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/mwp1sub-407309_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/mwp1sub-407309_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/p0sub-407309_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/p0sub-407309_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/p0sub-407309_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/t_sub-407309_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/t_sub-407309_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/t_sub-407309_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/t_sub-407309_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/t_sub-407309_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/t_sub-407309_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/wp0sub-407309_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/wp0sub-407309_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-407309/mri/wp0sub-407309_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-407309/report/cat_sub-407309_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/report/cat_sub-407309_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/report/cat_sub-407309_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-407309/report/catreport_sub-407309_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-407309/report/catreport_sub-407309_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-407309/report/catreport_sub-407309_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001007 seconds
flock: executing git
SUCCESS
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