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ds004173-catqc/logs/10071044.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_922612/ds (dataset)
install(ok): /var/lib/condor/execute/dir_922612/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922612/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:08 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:08 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922612/ds/sub-000179/sub-000179_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-000179/sub-000179_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 62s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 6s
40s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 68s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 8s
82s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 6s
95s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
89s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 13s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 71s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
124s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 52s
ROI estimation of 'lpba40' atlas 16s
ROI estimation of 'hammers' atlas 39s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 24s
ROI estimation of 'mori' atlas 35s
ROI estimation of 'anatomy3' atlas 51s
ROI estimation of 'julichbrain' atlas 62s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 26s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 40s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 60s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 68s
Write results 69s
528s
Quality check 13s
/var/lib/condor/execute/dir_922612/ds/sub-000179/report/catreport_sub-000179_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 9 second(s).
Image Quality Rating (IQR): 86.80% (B+)
GM volume (GMV): 41.55% (599.47 / 1442.85 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922612/ds/sub-000179/mri
Reports are saved in /var/lib/condor/execute/dir_922612/ds/sub-000179/report
Labels are saved in /var/lib/condor/execute/dir_922612/ds/sub-000179/label
------------------------------------------------------------------------
22-Oct-2025 01:05:19 - Done 'CAT12: Segmentation'
22-Oct-2025 01:05:19 - Done
Bye for now...
get(ok): sourcedata/raw/sub-000179/anat/sub-000179_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922612/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_922612/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-000179/label/catROI_sub-000179_acq-headmotion2_T1w.mat (file)
add(ok): sub-000179/label/catROI_sub-000179_acq-headmotion2_T1w.xml (file)
add(ok): sub-000179/mri/it_sub-000179_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000179/mri/it_sub-000179_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000179/mri/m0wp1sub-000179_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000179/mri/mwp1sub-000179_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000179/mri/p0sub-000179_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000179/mri/t_sub-000179_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000179/mri/t_sub-000179_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000179/mri/wp0sub-000179_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000179/report/cat_sub-000179_acq-headmotion2_T1w.mat (file)
add(ok): sub-000179/report/cat_sub-000179_acq-headmotion2_T1w.xml (file)
add(ok): sub-000179/report/catlog_sub-000179_acq-headmotion2_T1w.txt (file)
add(ok): sub-000179/report/catreport_sub-000179_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:06:01 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:06:01 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922612/ds/sub-000179/sub-000179_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-000179/sub-000179_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 61s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 5s
39s
Correct center-of-mass 3s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
77s
SPM preprocessing 1 (estimate 2): 63s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
81s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 6s
96s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.05) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
90s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 16s
Ventricle detection 13s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 58s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
111s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 12s
ROI estimation of 'neuromorphometrics' atlas 43s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 36s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 26s
ROI estimation of 'anatomy3' atlas 37s
ROI estimation of 'julichbrain' atlas 41s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 54s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 72s
Write results 74s
438s
Quality check 13s
/var/lib/condor/execute/dir_922612/ds/sub-000179/report/catreport_sub-000179_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 35 second(s).
Image Quality Rating (IQR): 87.70% (B+)
GM volume (GMV): 42.18% (609.18 / 1444.18 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922612/ds/sub-000179/mri
Reports are saved in /var/lib/condor/execute/dir_922612/ds/sub-000179/report
Labels are saved in /var/lib/condor/execute/dir_922612/ds/sub-000179/label
------------------------------------------------------------------------
22-Oct-2025 01:29:38 - Done 'CAT12: Segmentation'
22-Oct-2025 01:29:38 - Done
Bye for now...
get(ok): sourcedata/raw/sub-000179/anat/sub-000179_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-000179/label/catROI_sub-000179_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-000179/mri/it_sub-000179_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-000179/mri/it_sub-000179_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000179/mri/m0wp1sub-000179_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000179/mri/mwp1sub-000179_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000179/mri/p0sub-000179_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000179/mri/t_sub-000179_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-000179/mri/t_sub-000179_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000179/mri/wp0sub-000179_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000179/report/cat_sub-000179_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-000179/report/catreport_sub-000179_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922612/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-000179/label/catROI_sub-000179_acq-headmotion1_T1w.mat (file)
add(ok): sub-000179/label/catROI_sub-000179_acq-headmotion1_T1w.xml (file)
add(ok): sub-000179/mri/it_sub-000179_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-000179/mri/it_sub-000179_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-000179/mri/m0wp1sub-000179_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000179/mri/mwp1sub-000179_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000179/mri/p0sub-000179_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000179/mri/t_sub-000179_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-000179/mri/t_sub-000179_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-000179/mri/wp0sub-000179_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000179/report/cat_sub-000179_acq-headmotion1_T1w.mat (file)
add(ok): sub-000179/report/cat_sub-000179_acq-headmotion1_T1w.xml (file)
add(ok): sub-000179/report/catlog_sub-000179_acq-headmotion1_T1w.txt (file)
add(ok): sub-000179/report/catreport_sub-000179_acq-headmotion1_T1w.pdf (file)
add(ok): sub-000179/label/catROI_sub-000179_acq-headmotion2_T1w.mat (file)
add(ok): sub-000179/mri/it_sub-000179_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000179/mri/it_sub-000179_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000179/mri/m0wp1sub-000179_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000179/mri/mwp1sub-000179_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000179/mri/p0sub-000179_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000179/mri/t_sub-000179_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000179/mri/t_sub-000179_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000179/mri/wp0sub-000179_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000179/report/cat_sub-000179_acq-headmotion2_T1w.mat (file)
add(ok): sub-000179/report/catreport_sub-000179_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:30:21 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:30:21 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922612/ds/sub-000179/sub-000179_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-000179/sub-000179_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 64s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
40s
Correct center-of-mass 4s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
76s
SPM preprocessing 1 (estimate 2): 57s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 8s
81s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 6s
95s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.05) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
91s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 14s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.13) 65s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
120s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 36s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 18s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 31s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 47s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 62s
Write results 63s
326s
Quality check 12s
/var/lib/condor/execute/dir_922612/ds/sub-000179/report/catreport_sub-000179_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 50 second(s).
Image Quality Rating (IQR): 87.96% (B+)
GM volume (GMV): 42.48% (620.56 / 1460.70 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922612/ds/sub-000179/mri
Reports are saved in /var/lib/condor/execute/dir_922612/ds/sub-000179/report
Labels are saved in /var/lib/condor/execute/dir_922612/ds/sub-000179/label
------------------------------------------------------------------------
22-Oct-2025 01:52:13 - Done 'CAT12: Segmentation'
22-Oct-2025 01:52:13 - Done
Bye for now...
get(ok): sourcedata/raw/sub-000179/anat/sub-000179_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-000179/label/catROI_sub-000179_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-000179/label/catROI_sub-000179_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-000179/mri/it_sub-000179_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-000179/mri/it_sub-000179_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000179/mri/it_sub-000179_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-000179/mri/it_sub-000179_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000179/mri/m0wp1sub-000179_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-000179/mri/m0wp1sub-000179_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000179/mri/mwp1sub-000179_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-000179/mri/mwp1sub-000179_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000179/mri/p0sub-000179_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-000179/mri/p0sub-000179_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000179/mri/t_sub-000179_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-000179/mri/t_sub-000179_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000179/mri/t_sub-000179_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-000179/mri/t_sub-000179_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000179/mri/wp0sub-000179_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-000179/mri/wp0sub-000179_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000179/report/cat_sub-000179_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-000179/report/cat_sub-000179_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-000179/report/catreport_sub-000179_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-000179/report/catreport_sub-000179_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922612/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-000179/label/catROI_sub-000179_acq-standard_T1w.mat (file)
add(ok): sub-000179/label/catROI_sub-000179_acq-standard_T1w.xml (file)
add(ok): sub-000179/mri/it_sub-000179_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000179/mri/it_sub-000179_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000179/mri/m0wp1sub-000179_acq-standard_T1w.nii.gz (file)
add(ok): sub-000179/mri/mwp1sub-000179_acq-standard_T1w.nii.gz (file)
add(ok): sub-000179/mri/p0sub-000179_acq-standard_T1w.nii.gz (file)
add(ok): sub-000179/mri/t_sub-000179_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000179/mri/t_sub-000179_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000179/mri/wp0sub-000179_acq-standard_T1w.nii.gz (file)
add(ok): sub-000179/report/cat_sub-000179_acq-standard_T1w.mat (file)
add(ok): sub-000179/report/cat_sub-000179_acq-standard_T1w.xml (file)
add(ok): sub-000179/report/catlog_sub-000179_acq-standard_T1w.txt (file)
add(ok): sub-000179/report/catreport_sub-000179_acq-standard_T1w.pdf (file)
add(ok): sub-000179/label/catROI_sub-000179_acq-headmotion1_T1w.mat (file)
add(ok): sub-000179/label/catROI_sub-000179_acq-headmotion2_T1w.mat (file)
add(ok): sub-000179/mri/it_sub-000179_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-000179/mri/it_sub-000179_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-000179/mri/it_sub-000179_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000179/mri/it_sub-000179_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000179/mri/m0wp1sub-000179_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000179/mri/m0wp1sub-000179_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000179/mri/mwp1sub-000179_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000179/mri/mwp1sub-000179_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000179/mri/p0sub-000179_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000179/mri/p0sub-000179_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000179/mri/t_sub-000179_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-000179/mri/t_sub-000179_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-000179/mri/t_sub-000179_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000179/mri/t_sub-000179_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000179/mri/wp0sub-000179_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000179/mri/wp0sub-000179_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000179/report/cat_sub-000179_acq-headmotion1_T1w.mat (file)
add(ok): sub-000179/report/cat_sub-000179_acq-headmotion2_T1w.mat (file)
add(ok): sub-000179/report/catreport_sub-000179_acq-headmotion1_T1w.pdf (file)
add(ok): sub-000179/report/catreport_sub-000179_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-000179/label/catROI_sub-000179_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/label/catROI_sub-000179_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/label/catROI_sub-000179_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/it_sub-000179_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/it_sub-000179_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/it_sub-000179_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/it_sub-000179_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/it_sub-000179_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/it_sub-000179_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/m0wp1sub-000179_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/m0wp1sub-000179_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/m0wp1sub-000179_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/mwp1sub-000179_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/mwp1sub-000179_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/mwp1sub-000179_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/p0sub-000179_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/p0sub-000179_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/p0sub-000179_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/t_sub-000179_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/t_sub-000179_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/t_sub-000179_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/t_sub-000179_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/t_sub-000179_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/t_sub-000179_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/wp0sub-000179_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/wp0sub-000179_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000179/mri/wp0sub-000179_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000179/report/cat_sub-000179_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/report/cat_sub-000179_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/report/cat_sub-000179_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000179/report/catreport_sub-000179_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-000179/report/catreport_sub-000179_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-000179/report/catreport_sub-000179_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000897 seconds
flock: executing git
SUCCESS
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