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ds004173-catqc/logs/10071042.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_922591/ds (dataset)
install(ok): /var/lib/condor/execute/dir_922591/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922591/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:08 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922591/ds/sub-177856/sub-177856_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-177856/sub-177856_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 53s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
39s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
73s
SPM preprocessing 1 (estimate 2): 52s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 13s
Update Skull-Stripping 39s
Update probability maps 8s
79s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 6s
94s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.12) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 23s
85s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 12s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 52s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
101s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 27s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 18s
ROI estimation of 'anatomy3' atlas 44s
ROI estimation of 'julichbrain' atlas 63s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 54s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 105s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 122s
Write results 124s
533s
Quality check 13s
/var/lib/condor/execute/dir_922591/ds/sub-177856/report/catreport_sub-177856_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 33 second(s).
Image Quality Rating (IQR): 87.27% (B+)
GM volume (GMV): 46.58% (614.61 / 1319.46 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922591/ds/sub-177856/mri
Reports are saved in /var/lib/condor/execute/dir_922591/ds/sub-177856/report
Labels are saved in /var/lib/condor/execute/dir_922591/ds/sub-177856/label
------------------------------------------------------------------------
22-Oct-2025 01:03:43 - Done 'CAT12: Segmentation'
22-Oct-2025 01:03:43 - Done
Bye for now...
get(ok): sourcedata/raw/sub-177856/anat/sub-177856_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922591/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_922591/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-177856/label/catROI_sub-177856_acq-headmotion1_T1w.mat (file)
add(ok): sub-177856/label/catROI_sub-177856_acq-headmotion1_T1w.xml (file)
add(ok): sub-177856/mri/it_sub-177856_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-177856/mri/it_sub-177856_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-177856/mri/m0wp1sub-177856_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-177856/mri/mwp1sub-177856_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-177856/mri/p0sub-177856_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-177856/mri/t_sub-177856_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-177856/mri/t_sub-177856_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-177856/mri/wp0sub-177856_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-177856/report/cat_sub-177856_acq-headmotion1_T1w.mat (file)
add(ok): sub-177856/report/cat_sub-177856_acq-headmotion1_T1w.xml (file)
add(ok): sub-177856/report/catlog_sub-177856_acq-headmotion1_T1w.txt (file)
add(ok): sub-177856/report/catreport_sub-177856_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:04:35 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:04:35 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922591/ds/sub-177856/sub-177856_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-177856/sub-177856_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 54s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
39s
Correct center-of-mass 4s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
68s
SPM preprocessing 1 (estimate 2): 68s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 13s
Update Skull-Stripping 39s
Update probability maps 8s
79s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 10s
99s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.09) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 24s
86s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 13s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 54s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
105s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 16s
ROI estimation of 'anatomy3' atlas 26s
ROI estimation of 'julichbrain' atlas 40s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 45s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 90s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 110s
Write results 113s
450s
Quality check 13s
/var/lib/condor/execute/dir_922591/ds/sub-177856/report/catreport_sub-177856_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 36 second(s).
Image Quality Rating (IQR): 87.14% (B+)
GM volume (GMV): 45.76% (612.96 / 1339.36 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922591/ds/sub-177856/mri
Reports are saved in /var/lib/condor/execute/dir_922591/ds/sub-177856/report
Labels are saved in /var/lib/condor/execute/dir_922591/ds/sub-177856/label
------------------------------------------------------------------------
22-Oct-2025 01:27:14 - Done 'CAT12: Segmentation'
22-Oct-2025 01:27:14 - Done
Bye for now...
get(ok): sourcedata/raw/sub-177856/anat/sub-177856_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-177856/label/catROI_sub-177856_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-177856/mri/it_sub-177856_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-177856/mri/it_sub-177856_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-177856/mri/m0wp1sub-177856_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-177856/mri/mwp1sub-177856_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-177856/mri/p0sub-177856_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-177856/mri/t_sub-177856_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-177856/mri/t_sub-177856_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-177856/mri/wp0sub-177856_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-177856/report/cat_sub-177856_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-177856/report/catreport_sub-177856_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922591/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-177856/label/catROI_sub-177856_acq-headmotion2_T1w.mat (file)
add(ok): sub-177856/label/catROI_sub-177856_acq-headmotion2_T1w.xml (file)
add(ok): sub-177856/mri/it_sub-177856_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-177856/mri/it_sub-177856_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-177856/mri/m0wp1sub-177856_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-177856/mri/mwp1sub-177856_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-177856/mri/p0sub-177856_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-177856/mri/t_sub-177856_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-177856/mri/t_sub-177856_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-177856/mri/wp0sub-177856_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-177856/report/cat_sub-177856_acq-headmotion2_T1w.mat (file)
add(ok): sub-177856/report/cat_sub-177856_acq-headmotion2_T1w.xml (file)
add(ok): sub-177856/report/catlog_sub-177856_acq-headmotion2_T1w.txt (file)
add(ok): sub-177856/report/catreport_sub-177856_acq-headmotion2_T1w.pdf (file)
add(ok): sub-177856/label/catROI_sub-177856_acq-headmotion1_T1w.mat (file)
add(ok): sub-177856/mri/it_sub-177856_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-177856/mri/it_sub-177856_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-177856/mri/m0wp1sub-177856_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-177856/mri/mwp1sub-177856_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-177856/mri/p0sub-177856_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-177856/mri/t_sub-177856_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-177856/mri/t_sub-177856_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-177856/mri/wp0sub-177856_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-177856/report/cat_sub-177856_acq-headmotion1_T1w.mat (file)
add(ok): sub-177856/report/catreport_sub-177856_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:28:13 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:28:13 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922591/ds/sub-177856/sub-177856_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-177856/sub-177856_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 55s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
39s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
69s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 39s
Update probability maps 8s
79s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 9s
99s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.11) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
86s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 16s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.07) 60s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
114s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 26s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.07,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 15s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 31s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 14s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 64s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 82s
Write results 84s
352s
Quality check 12s
/var/lib/condor/execute/dir_922591/ds/sub-177856/report/catreport_sub-177856_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 2 second(s).
Image Quality Rating (IQR): 87.83% (B+)
GM volume (GMV): 46.98% (633.28 / 1348.01 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922591/ds/sub-177856/mri
Reports are saved in /var/lib/condor/execute/dir_922591/ds/sub-177856/report
Labels are saved in /var/lib/condor/execute/dir_922591/ds/sub-177856/label
------------------------------------------------------------------------
22-Oct-2025 01:49:19 - Done 'CAT12: Segmentation'
22-Oct-2025 01:49:19 - Done
Bye for now...
get(ok): sourcedata/raw/sub-177856/anat/sub-177856_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-177856/label/catROI_sub-177856_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-177856/label/catROI_sub-177856_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-177856/mri/it_sub-177856_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-177856/mri/it_sub-177856_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-177856/mri/it_sub-177856_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-177856/mri/it_sub-177856_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-177856/mri/m0wp1sub-177856_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-177856/mri/m0wp1sub-177856_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-177856/mri/mwp1sub-177856_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-177856/mri/mwp1sub-177856_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-177856/mri/p0sub-177856_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-177856/mri/p0sub-177856_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-177856/mri/t_sub-177856_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-177856/mri/t_sub-177856_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-177856/mri/t_sub-177856_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-177856/mri/t_sub-177856_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-177856/mri/wp0sub-177856_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-177856/mri/wp0sub-177856_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-177856/report/cat_sub-177856_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-177856/report/cat_sub-177856_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-177856/report/catreport_sub-177856_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-177856/report/catreport_sub-177856_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922591/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-177856/label/catROI_sub-177856_acq-standard_T1w.mat (file)
add(ok): sub-177856/label/catROI_sub-177856_acq-standard_T1w.xml (file)
add(ok): sub-177856/mri/it_sub-177856_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-177856/mri/it_sub-177856_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-177856/mri/m0wp1sub-177856_acq-standard_T1w.nii.gz (file)
add(ok): sub-177856/mri/mwp1sub-177856_acq-standard_T1w.nii.gz (file)
add(ok): sub-177856/mri/p0sub-177856_acq-standard_T1w.nii.gz (file)
add(ok): sub-177856/mri/t_sub-177856_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-177856/mri/t_sub-177856_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-177856/mri/wp0sub-177856_acq-standard_T1w.nii.gz (file)
add(ok): sub-177856/report/cat_sub-177856_acq-standard_T1w.mat (file)
add(ok): sub-177856/report/cat_sub-177856_acq-standard_T1w.xml (file)
add(ok): sub-177856/report/catlog_sub-177856_acq-standard_T1w.txt (file)
add(ok): sub-177856/report/catreport_sub-177856_acq-standard_T1w.pdf (file)
add(ok): sub-177856/label/catROI_sub-177856_acq-headmotion1_T1w.mat (file)
add(ok): sub-177856/label/catROI_sub-177856_acq-headmotion2_T1w.mat (file)
add(ok): sub-177856/mri/it_sub-177856_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-177856/mri/it_sub-177856_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-177856/mri/it_sub-177856_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-177856/mri/it_sub-177856_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-177856/mri/m0wp1sub-177856_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-177856/mri/m0wp1sub-177856_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-177856/mri/mwp1sub-177856_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-177856/mri/mwp1sub-177856_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-177856/mri/p0sub-177856_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-177856/mri/p0sub-177856_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-177856/mri/t_sub-177856_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-177856/mri/t_sub-177856_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-177856/mri/t_sub-177856_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-177856/mri/t_sub-177856_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-177856/mri/wp0sub-177856_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-177856/mri/wp0sub-177856_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-177856/report/cat_sub-177856_acq-headmotion1_T1w.mat (file)
add(ok): sub-177856/report/cat_sub-177856_acq-headmotion2_T1w.mat (file)
add(ok): sub-177856/report/catreport_sub-177856_acq-headmotion1_T1w.pdf (file)
add(ok): sub-177856/report/catreport_sub-177856_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-177856/label/catROI_sub-177856_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/label/catROI_sub-177856_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/label/catROI_sub-177856_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/it_sub-177856_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/it_sub-177856_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/it_sub-177856_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/it_sub-177856_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/it_sub-177856_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/it_sub-177856_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/m0wp1sub-177856_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/m0wp1sub-177856_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/m0wp1sub-177856_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/mwp1sub-177856_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/mwp1sub-177856_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/mwp1sub-177856_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/p0sub-177856_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/p0sub-177856_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/p0sub-177856_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/t_sub-177856_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/t_sub-177856_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/t_sub-177856_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/t_sub-177856_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/t_sub-177856_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/t_sub-177856_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/wp0sub-177856_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/wp0sub-177856_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-177856/mri/wp0sub-177856_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-177856/report/cat_sub-177856_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/report/cat_sub-177856_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/report/cat_sub-177856_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-177856/report/catreport_sub-177856_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-177856/report/catreport_sub-177856_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-177856/report/catreport_sub-177856_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.284058 seconds
flock: executing git
SUCCESS
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