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ds004173-catqc/logs/10071041.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_922580/ds (dataset)
install(ok): /var/lib/condor/execute/dir_922580/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922580/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:08 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922580/ds/sub-570379/sub-570379_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-570379/sub-570379_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 62s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
40s
Correct center-of-mass 6s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
75s
SPM preprocessing 1 (estimate 2): 64s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
81s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 9s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
92s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 16s
Ventricle detection 18s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 57s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
115s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
8s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 43s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 37s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 23s
ROI estimation of 'mori' atlas 34s
ROI estimation of 'anatomy3' atlas 50s
ROI estimation of 'julichbrain' atlas 65s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 26s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 48s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 70s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 71s
Write results 73s
530s
Quality check 13s
/var/lib/condor/execute/dir_922580/ds/sub-570379/report/catreport_sub-570379_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 55 second(s).
Image Quality Rating (IQR): 87.05% (B+)
GM volume (GMV): 48.91% (694.98 / 1420.98 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922580/ds/sub-570379/mri
Reports are saved in /var/lib/condor/execute/dir_922580/ds/sub-570379/report
Labels are saved in /var/lib/condor/execute/dir_922580/ds/sub-570379/label
------------------------------------------------------------------------
22-Oct-2025 01:05:06 - Done 'CAT12: Segmentation'
22-Oct-2025 01:05:06 - Done
Bye for now...
get(ok): sourcedata/raw/sub-570379/anat/sub-570379_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922580/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_922580/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-570379/label/catROI_sub-570379_acq-standard_T1w.mat (file)
add(ok): sub-570379/label/catROI_sub-570379_acq-standard_T1w.xml (file)
add(ok): sub-570379/mri/it_sub-570379_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-570379/mri/it_sub-570379_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-570379/mri/m0wp1sub-570379_acq-standard_T1w.nii.gz (file)
add(ok): sub-570379/mri/mwp1sub-570379_acq-standard_T1w.nii.gz (file)
add(ok): sub-570379/mri/p0sub-570379_acq-standard_T1w.nii.gz (file)
add(ok): sub-570379/mri/t_sub-570379_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-570379/mri/t_sub-570379_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-570379/mri/wp0sub-570379_acq-standard_T1w.nii.gz (file)
add(ok): sub-570379/report/cat_sub-570379_acq-standard_T1w.mat (file)
add(ok): sub-570379/report/cat_sub-570379_acq-standard_T1w.xml (file)
add(ok): sub-570379/report/catlog_sub-570379_acq-standard_T1w.txt (file)
add(ok): sub-570379/report/catreport_sub-570379_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:05:47 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:05:47 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922580/ds/sub-570379/sub-570379_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-570379/sub-570379_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 60s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
39s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
69s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
80s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 10s
99s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
90s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 16s
Ventricle detection 16s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 55s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
111s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 36s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 28s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 31s
ROI estimation of 'anatomy3' atlas 40s
ROI estimation of 'julichbrain' atlas 51s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 19s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 32s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 59s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 72s
Write results 74s
447s
Quality check 13s
/var/lib/condor/execute/dir_922580/ds/sub-570379/report/catreport_sub-570379_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 25 second(s).
Image Quality Rating (IQR): 86.78% (B+)
GM volume (GMV): 47.41% (672.73 / 1418.82 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922580/ds/sub-570379/mri
Reports are saved in /var/lib/condor/execute/dir_922580/ds/sub-570379/report
Labels are saved in /var/lib/condor/execute/dir_922580/ds/sub-570379/label
------------------------------------------------------------------------
22-Oct-2025 01:29:15 - Done 'CAT12: Segmentation'
22-Oct-2025 01:29:15 - Done
Bye for now...
get(ok): sourcedata/raw/sub-570379/anat/sub-570379_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-570379/label/catROI_sub-570379_acq-standard_T1w.mat (file)
unlock(ok): sub-570379/mri/it_sub-570379_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-570379/mri/it_sub-570379_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-570379/mri/m0wp1sub-570379_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-570379/mri/mwp1sub-570379_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-570379/mri/p0sub-570379_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-570379/mri/t_sub-570379_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-570379/mri/t_sub-570379_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-570379/mri/wp0sub-570379_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-570379/report/cat_sub-570379_acq-standard_T1w.mat (file)
unlock(ok): sub-570379/report/catreport_sub-570379_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922580/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-570379/label/catROI_sub-570379_acq-headmotion1_T1w.mat (file)
add(ok): sub-570379/label/catROI_sub-570379_acq-headmotion1_T1w.xml (file)
add(ok): sub-570379/mri/it_sub-570379_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-570379/mri/it_sub-570379_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-570379/mri/m0wp1sub-570379_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-570379/mri/mwp1sub-570379_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-570379/mri/p0sub-570379_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-570379/mri/t_sub-570379_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-570379/mri/t_sub-570379_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-570379/mri/wp0sub-570379_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-570379/report/cat_sub-570379_acq-headmotion1_T1w.mat (file)
add(ok): sub-570379/report/cat_sub-570379_acq-headmotion1_T1w.xml (file)
add(ok): sub-570379/report/catlog_sub-570379_acq-headmotion1_T1w.txt (file)
add(ok): sub-570379/report/catreport_sub-570379_acq-headmotion1_T1w.pdf (file)
add(ok): sub-570379/label/catROI_sub-570379_acq-standard_T1w.mat (file)
add(ok): sub-570379/mri/it_sub-570379_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-570379/mri/it_sub-570379_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-570379/mri/m0wp1sub-570379_acq-standard_T1w.nii.gz (file)
add(ok): sub-570379/mri/mwp1sub-570379_acq-standard_T1w.nii.gz (file)
add(ok): sub-570379/mri/p0sub-570379_acq-standard_T1w.nii.gz (file)
add(ok): sub-570379/mri/t_sub-570379_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-570379/mri/t_sub-570379_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-570379/mri/wp0sub-570379_acq-standard_T1w.nii.gz (file)
add(ok): sub-570379/report/cat_sub-570379_acq-standard_T1w.mat (file)
add(ok): sub-570379/report/catreport_sub-570379_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:30:00 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:30:00 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922580/ds/sub-570379/sub-570379_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-570379/sub-570379_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 60s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
40s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
69s
SPM preprocessing 1 (estimate 2): 66s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
81s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 6s
94s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
90s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 16s
Ventricle detection 14s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 60s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
113s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 32s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 14s
ROI estimation of 'mori' atlas 21s
ROI estimation of 'anatomy3' atlas 24s
ROI estimation of 'julichbrain' atlas 33s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 14s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 51s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 62s
Write results 63s
340s
Quality check 12s
/var/lib/condor/execute/dir_922580/ds/sub-570379/report/catreport_sub-570379_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 24 second(s).
Image Quality Rating (IQR): 87.01% (B+)
GM volume (GMV): 47.37% (676.91 / 1428.92 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922580/ds/sub-570379/mri
Reports are saved in /var/lib/condor/execute/dir_922580/ds/sub-570379/report
Labels are saved in /var/lib/condor/execute/dir_922580/ds/sub-570379/label
------------------------------------------------------------------------
22-Oct-2025 01:51:27 - Done 'CAT12: Segmentation'
22-Oct-2025 01:51:27 - Done
Bye for now...
get(ok): sourcedata/raw/sub-570379/anat/sub-570379_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-570379/label/catROI_sub-570379_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-570379/label/catROI_sub-570379_acq-standard_T1w.mat (file)
unlock(ok): sub-570379/mri/it_sub-570379_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-570379/mri/it_sub-570379_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-570379/mri/it_sub-570379_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-570379/mri/it_sub-570379_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-570379/mri/m0wp1sub-570379_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-570379/mri/m0wp1sub-570379_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-570379/mri/mwp1sub-570379_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-570379/mri/mwp1sub-570379_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-570379/mri/p0sub-570379_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-570379/mri/p0sub-570379_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-570379/mri/t_sub-570379_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-570379/mri/t_sub-570379_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-570379/mri/t_sub-570379_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-570379/mri/t_sub-570379_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-570379/mri/wp0sub-570379_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-570379/mri/wp0sub-570379_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-570379/report/cat_sub-570379_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-570379/report/cat_sub-570379_acq-standard_T1w.mat (file)
unlock(ok): sub-570379/report/catreport_sub-570379_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-570379/report/catreport_sub-570379_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922580/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-570379/label/catROI_sub-570379_acq-headmotion2_T1w.mat (file)
add(ok): sub-570379/label/catROI_sub-570379_acq-headmotion2_T1w.xml (file)
add(ok): sub-570379/mri/it_sub-570379_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-570379/mri/it_sub-570379_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-570379/mri/m0wp1sub-570379_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-570379/mri/mwp1sub-570379_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-570379/mri/p0sub-570379_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-570379/mri/t_sub-570379_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-570379/mri/t_sub-570379_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-570379/mri/wp0sub-570379_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-570379/report/cat_sub-570379_acq-headmotion2_T1w.mat (file)
add(ok): sub-570379/report/cat_sub-570379_acq-headmotion2_T1w.xml (file)
add(ok): sub-570379/report/catlog_sub-570379_acq-headmotion2_T1w.txt (file)
add(ok): sub-570379/report/catreport_sub-570379_acq-headmotion2_T1w.pdf (file)
add(ok): sub-570379/label/catROI_sub-570379_acq-headmotion1_T1w.mat (file)
add(ok): sub-570379/label/catROI_sub-570379_acq-standard_T1w.mat (file)
add(ok): sub-570379/mri/it_sub-570379_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-570379/mri/it_sub-570379_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-570379/mri/it_sub-570379_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-570379/mri/it_sub-570379_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-570379/mri/m0wp1sub-570379_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-570379/mri/m0wp1sub-570379_acq-standard_T1w.nii.gz (file)
add(ok): sub-570379/mri/mwp1sub-570379_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-570379/mri/mwp1sub-570379_acq-standard_T1w.nii.gz (file)
add(ok): sub-570379/mri/p0sub-570379_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-570379/mri/p0sub-570379_acq-standard_T1w.nii.gz (file)
add(ok): sub-570379/mri/t_sub-570379_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-570379/mri/t_sub-570379_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-570379/mri/t_sub-570379_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-570379/mri/t_sub-570379_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-570379/mri/wp0sub-570379_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-570379/mri/wp0sub-570379_acq-standard_T1w.nii.gz (file)
add(ok): sub-570379/report/cat_sub-570379_acq-headmotion1_T1w.mat (file)
add(ok): sub-570379/report/cat_sub-570379_acq-standard_T1w.mat (file)
add(ok): sub-570379/report/catreport_sub-570379_acq-headmotion1_T1w.pdf (file)
add(ok): sub-570379/report/catreport_sub-570379_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-570379/label/catROI_sub-570379_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/label/catROI_sub-570379_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/label/catROI_sub-570379_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/it_sub-570379_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/it_sub-570379_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/it_sub-570379_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/it_sub-570379_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/it_sub-570379_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/it_sub-570379_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/m0wp1sub-570379_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/m0wp1sub-570379_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/m0wp1sub-570379_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/mwp1sub-570379_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/mwp1sub-570379_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/mwp1sub-570379_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/p0sub-570379_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/p0sub-570379_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/p0sub-570379_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/t_sub-570379_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/t_sub-570379_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/t_sub-570379_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/t_sub-570379_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/t_sub-570379_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/t_sub-570379_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/wp0sub-570379_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/wp0sub-570379_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-570379/mri/wp0sub-570379_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-570379/report/cat_sub-570379_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/report/cat_sub-570379_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/report/cat_sub-570379_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-570379/report/catreport_sub-570379_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-570379/report/catreport_sub-570379_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-570379/report/catreport_sub-570379_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000993 seconds
flock: executing git
SUCCESS
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