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ds004173-catqc/logs/10071038.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_922546/ds (dataset)
install(ok): /var/lib/condor/execute/dir_922546/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922546/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:05 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:05 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922546/ds/sub-313623/sub-313623_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-313623/sub-313623_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 48s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 5s
38s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
4s
Use initial fine affine registration. 4s
Use previous fine affine registration. 59s
SPM preprocessing 1 (estimate 2): 47s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
80s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 10s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.10) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 24s
89s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 16s
Ventricle detection 15s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 74s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
129s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 16s
ROI estimation of 'anatomy3' atlas 23s
ROI estimation of 'julichbrain' atlas 30s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 13s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 54s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 75s
Write results 77s
334s
Quality check 13s
/var/lib/condor/execute/dir_922546/ds/sub-313623/report/catreport_sub-313623_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 20 minute(s) and 53 second(s).
Image Quality Rating (IQR): 88.13% (B+)
GM volume (GMV): 48.20% (686.19 / 1423.61 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922546/ds/sub-313623/mri
Reports are saved in /var/lib/condor/execute/dir_922546/ds/sub-313623/report
Labels are saved in /var/lib/condor/execute/dir_922546/ds/sub-313623/label
------------------------------------------------------------------------
22-Oct-2025 01:01:00 - Done 'CAT12: Segmentation'
22-Oct-2025 01:01:00 - Done
Bye for now...
get(ok): sourcedata/raw/sub-313623/anat/sub-313623_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922546/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_922546/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-313623/label/catROI_sub-313623_acq-standard_T1w.mat (file)
add(ok): sub-313623/label/catROI_sub-313623_acq-standard_T1w.xml (file)
add(ok): sub-313623/mri/it_sub-313623_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-313623/mri/it_sub-313623_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-313623/mri/m0wp1sub-313623_acq-standard_T1w.nii.gz (file)
add(ok): sub-313623/mri/mwp1sub-313623_acq-standard_T1w.nii.gz (file)
add(ok): sub-313623/mri/p0sub-313623_acq-standard_T1w.nii.gz (file)
add(ok): sub-313623/mri/t_sub-313623_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-313623/mri/t_sub-313623_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-313623/mri/wp0sub-313623_acq-standard_T1w.nii.gz (file)
add(ok): sub-313623/report/cat_sub-313623_acq-standard_T1w.mat (file)
add(ok): sub-313623/report/cat_sub-313623_acq-standard_T1w.xml (file)
add(ok): sub-313623/report/catlog_sub-313623_acq-standard_T1w.txt (file)
add(ok): sub-313623/report/catreport_sub-313623_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:01:41 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:01:41 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922546/ds/sub-313623/sub-313623_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-313623/sub-313623_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 47s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
38s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
3s
Use initial fine affine registration. 5s
Use previous fine affine registration. 64s
SPM preprocessing 1 (estimate 2): 46s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
80s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 10s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.10) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 24s
88s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 16s
Ventricle detection 14s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 55s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
109s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 15s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 30s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 53s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 71s
Write results 73s
323s
Quality check 13s
/var/lib/condor/execute/dir_922546/ds/sub-313623/report/catreport_sub-313623_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 20 minute(s) and 21 second(s).
Image Quality Rating (IQR): 87.14% (B+)
GM volume (GMV): 47.15% (671.44 / 1424.07 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922546/ds/sub-313623/mri
Reports are saved in /var/lib/condor/execute/dir_922546/ds/sub-313623/report
Labels are saved in /var/lib/condor/execute/dir_922546/ds/sub-313623/label
------------------------------------------------------------------------
22-Oct-2025 01:22:05 - Done 'CAT12: Segmentation'
22-Oct-2025 01:22:05 - Done
Bye for now...
get(ok): sourcedata/raw/sub-313623/anat/sub-313623_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-313623/label/catROI_sub-313623_acq-standard_T1w.mat (file)
unlock(ok): sub-313623/mri/it_sub-313623_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-313623/mri/it_sub-313623_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-313623/mri/m0wp1sub-313623_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-313623/mri/mwp1sub-313623_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-313623/mri/p0sub-313623_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-313623/mri/t_sub-313623_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-313623/mri/t_sub-313623_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-313623/mri/wp0sub-313623_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-313623/report/cat_sub-313623_acq-standard_T1w.mat (file)
unlock(ok): sub-313623/report/catreport_sub-313623_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922546/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-313623/label/catROI_sub-313623_acq-headmotion1_T1w.mat (file)
add(ok): sub-313623/label/catROI_sub-313623_acq-headmotion1_T1w.xml (file)
add(ok): sub-313623/mri/it_sub-313623_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-313623/mri/it_sub-313623_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-313623/mri/m0wp1sub-313623_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-313623/mri/mwp1sub-313623_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-313623/mri/p0sub-313623_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-313623/mri/t_sub-313623_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-313623/mri/t_sub-313623_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-313623/mri/wp0sub-313623_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-313623/report/cat_sub-313623_acq-headmotion1_T1w.mat (file)
add(ok): sub-313623/report/cat_sub-313623_acq-headmotion1_T1w.xml (file)
add(ok): sub-313623/report/catlog_sub-313623_acq-headmotion1_T1w.txt (file)
add(ok): sub-313623/report/catreport_sub-313623_acq-headmotion1_T1w.pdf (file)
add(ok): sub-313623/label/catROI_sub-313623_acq-standard_T1w.mat (file)
add(ok): sub-313623/mri/it_sub-313623_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-313623/mri/it_sub-313623_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-313623/mri/m0wp1sub-313623_acq-standard_T1w.nii.gz (file)
add(ok): sub-313623/mri/mwp1sub-313623_acq-standard_T1w.nii.gz (file)
add(ok): sub-313623/mri/p0sub-313623_acq-standard_T1w.nii.gz (file)
add(ok): sub-313623/mri/t_sub-313623_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-313623/mri/t_sub-313623_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-313623/mri/wp0sub-313623_acq-standard_T1w.nii.gz (file)
add(ok): sub-313623/report/cat_sub-313623_acq-standard_T1w.mat (file)
add(ok): sub-313623/report/catreport_sub-313623_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:22:45 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:22:45 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922546/ds/sub-313623/sub-313623_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-313623/sub-313623_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 50s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
39s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
73s
SPM preprocessing 1 (estimate 2): 48s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
80s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 10s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.06) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
90s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 16s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 72s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
129s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 26s
ROI estimation of 'lpba40' atlas 7s
ROI estimation of 'hammers' atlas 18s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 14s
ROI estimation of 'anatomy3' atlas 20s
ROI estimation of 'julichbrain' atlas 26s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 48s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 66s
Write results 67s
295s
Quality check 12s
/var/lib/condor/execute/dir_922546/ds/sub-313623/report/catreport_sub-313623_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 20 minute(s) and 21 second(s).
Image Quality Rating (IQR): 87.12% (B+)
GM volume (GMV): 46.91% (663.56 / 1414.49 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922546/ds/sub-313623/mri
Reports are saved in /var/lib/condor/execute/dir_922546/ds/sub-313623/report
Labels are saved in /var/lib/condor/execute/dir_922546/ds/sub-313623/label
------------------------------------------------------------------------
22-Oct-2025 01:43:09 - Done 'CAT12: Segmentation'
22-Oct-2025 01:43:09 - Done
Bye for now...
get(ok): sourcedata/raw/sub-313623/anat/sub-313623_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-313623/label/catROI_sub-313623_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-313623/label/catROI_sub-313623_acq-standard_T1w.mat (file)
unlock(ok): sub-313623/mri/it_sub-313623_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-313623/mri/it_sub-313623_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-313623/mri/it_sub-313623_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-313623/mri/it_sub-313623_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-313623/mri/m0wp1sub-313623_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-313623/mri/m0wp1sub-313623_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-313623/mri/mwp1sub-313623_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-313623/mri/mwp1sub-313623_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-313623/mri/p0sub-313623_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-313623/mri/p0sub-313623_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-313623/mri/t_sub-313623_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-313623/mri/t_sub-313623_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-313623/mri/t_sub-313623_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-313623/mri/t_sub-313623_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-313623/mri/wp0sub-313623_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-313623/mri/wp0sub-313623_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-313623/report/cat_sub-313623_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-313623/report/cat_sub-313623_acq-standard_T1w.mat (file)
unlock(ok): sub-313623/report/catreport_sub-313623_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-313623/report/catreport_sub-313623_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922546/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-313623/label/catROI_sub-313623_acq-headmotion2_T1w.mat (file)
add(ok): sub-313623/label/catROI_sub-313623_acq-headmotion2_T1w.xml (file)
add(ok): sub-313623/mri/it_sub-313623_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-313623/mri/it_sub-313623_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-313623/mri/m0wp1sub-313623_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-313623/mri/mwp1sub-313623_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-313623/mri/p0sub-313623_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-313623/mri/t_sub-313623_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-313623/mri/t_sub-313623_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-313623/mri/wp0sub-313623_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-313623/report/cat_sub-313623_acq-headmotion2_T1w.mat (file)
add(ok): sub-313623/report/cat_sub-313623_acq-headmotion2_T1w.xml (file)
add(ok): sub-313623/report/catlog_sub-313623_acq-headmotion2_T1w.txt (file)
add(ok): sub-313623/report/catreport_sub-313623_acq-headmotion2_T1w.pdf (file)
add(ok): sub-313623/label/catROI_sub-313623_acq-headmotion1_T1w.mat (file)
add(ok): sub-313623/label/catROI_sub-313623_acq-standard_T1w.mat (file)
add(ok): sub-313623/mri/it_sub-313623_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-313623/mri/it_sub-313623_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-313623/mri/it_sub-313623_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-313623/mri/it_sub-313623_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-313623/mri/m0wp1sub-313623_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-313623/mri/m0wp1sub-313623_acq-standard_T1w.nii.gz (file)
add(ok): sub-313623/mri/mwp1sub-313623_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-313623/mri/mwp1sub-313623_acq-standard_T1w.nii.gz (file)
add(ok): sub-313623/mri/p0sub-313623_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-313623/mri/p0sub-313623_acq-standard_T1w.nii.gz (file)
add(ok): sub-313623/mri/t_sub-313623_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-313623/mri/t_sub-313623_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-313623/mri/t_sub-313623_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-313623/mri/t_sub-313623_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-313623/mri/wp0sub-313623_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-313623/mri/wp0sub-313623_acq-standard_T1w.nii.gz (file)
add(ok): sub-313623/report/cat_sub-313623_acq-headmotion1_T1w.mat (file)
add(ok): sub-313623/report/cat_sub-313623_acq-standard_T1w.mat (file)
add(ok): sub-313623/report/catreport_sub-313623_acq-headmotion1_T1w.pdf (file)
add(ok): sub-313623/report/catreport_sub-313623_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-313623/label/catROI_sub-313623_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/label/catROI_sub-313623_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/label/catROI_sub-313623_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/it_sub-313623_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/it_sub-313623_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/it_sub-313623_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/it_sub-313623_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/it_sub-313623_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/it_sub-313623_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/m0wp1sub-313623_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/m0wp1sub-313623_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/m0wp1sub-313623_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/mwp1sub-313623_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/mwp1sub-313623_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/mwp1sub-313623_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/p0sub-313623_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/p0sub-313623_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/p0sub-313623_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/t_sub-313623_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/t_sub-313623_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/t_sub-313623_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/t_sub-313623_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/t_sub-313623_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/t_sub-313623_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/wp0sub-313623_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/wp0sub-313623_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-313623/mri/wp0sub-313623_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-313623/report/cat_sub-313623_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/report/cat_sub-313623_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/report/cat_sub-313623_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-313623/report/catreport_sub-313623_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-313623/report/catreport_sub-313623_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-313623/report/catreport_sub-313623_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001552 seconds
flock: executing git
SUCCESS
View git blame Copy permalink