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ds004173-catqc/logs/10071036.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_922531/ds (dataset)
install(ok): /var/lib/condor/execute/dir_922531/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922531/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:03 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:03 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922531/ds/sub-581638/sub-581638_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-581638/sub-581638_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 55s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 5s
Refine background 3s
Final correction 4s
Final scaling 5s
37s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
5s
Use initial fine affine registration. 55s
SPM preprocessing 1 (estimate 2): 46s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 12s
Update Skull-Stripping 38s
Update probability maps 8s
76s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 9s
95s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.11) 11s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 32s
90s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 14s
Ventricle detection 12s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 46s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
92s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 27s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.990.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 15s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 29s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 13s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 54s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 74s
Write results 75s
327s
Quality check 11s
/var/lib/condor/execute/dir_922531/ds/sub-581638/report/catreport_sub-581638_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 20 minute(s) and 12 second(s).
Image Quality Rating (IQR): 87.91% (B+)
GM volume (GMV): 49.37% (594.57 / 1204.21 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922531/ds/sub-581638/mri
Reports are saved in /var/lib/condor/execute/dir_922531/ds/sub-581638/report
Labels are saved in /var/lib/condor/execute/dir_922531/ds/sub-581638/label
------------------------------------------------------------------------
22-Oct-2025 01:00:18 - Done 'CAT12: Segmentation'
22-Oct-2025 01:00:18 - Done
Bye for now...
get(ok): sourcedata/raw/sub-581638/anat/sub-581638_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922531/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_922531/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-581638/label/catROI_sub-581638_acq-standard_T1w.mat (file)
add(ok): sub-581638/label/catROI_sub-581638_acq-standard_T1w.xml (file)
add(ok): sub-581638/mri/it_sub-581638_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-581638/mri/it_sub-581638_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-581638/mri/m0wp1sub-581638_acq-standard_T1w.nii.gz (file)
add(ok): sub-581638/mri/mwp1sub-581638_acq-standard_T1w.nii.gz (file)
add(ok): sub-581638/mri/p0sub-581638_acq-standard_T1w.nii.gz (file)
add(ok): sub-581638/mri/t_sub-581638_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-581638/mri/t_sub-581638_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-581638/mri/wp0sub-581638_acq-standard_T1w.nii.gz (file)
add(ok): sub-581638/report/cat_sub-581638_acq-standard_T1w.mat (file)
add(ok): sub-581638/report/cat_sub-581638_acq-standard_T1w.xml (file)
add(ok): sub-581638/report/catlog_sub-581638_acq-standard_T1w.txt (file)
add(ok): sub-581638/report/catreport_sub-581638_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:00:58 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:00:58 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922531/ds/sub-581638/sub-581638_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-581638/sub-581638_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 53s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 6s
Refine background 3s
Final correction 4s
Final scaling 5s
37s
Correct center-of-mass 7s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
10s
Use initial fine affine registration. 56s
SPM preprocessing 1 (estimate 2): 50s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 38s
Update probability maps 8s
76s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 10s
96s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.08) 11s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 22s
80s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 13s
Ventricle detection 13s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 43s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
89s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 26s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 26s
ROI estimation of 'lpba40' atlas 7s
ROI estimation of 'hammers' atlas 18s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 13s
ROI estimation of 'anatomy3' atlas 19s
ROI estimation of 'julichbrain' atlas 26s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 67s
Write results 69s
294s
Quality check 11s
/var/lib/condor/execute/dir_922531/ds/sub-581638/report/catreport_sub-581638_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 18 minute(s) and 58 second(s).
Image Quality Rating (IQR): 81.17% (B-)
GM volume (GMV): 47.97% (575.95 / 1200.74 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922531/ds/sub-581638/mri
Reports are saved in /var/lib/condor/execute/dir_922531/ds/sub-581638/report
Labels are saved in /var/lib/condor/execute/dir_922531/ds/sub-581638/label
------------------------------------------------------------------------
22-Oct-2025 01:19:59 - Done 'CAT12: Segmentation'
22-Oct-2025 01:19:59 - Done
Bye for now...
get(ok): sourcedata/raw/sub-581638/anat/sub-581638_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-581638/label/catROI_sub-581638_acq-standard_T1w.mat (file)
unlock(ok): sub-581638/mri/it_sub-581638_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-581638/mri/it_sub-581638_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-581638/mri/m0wp1sub-581638_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-581638/mri/mwp1sub-581638_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-581638/mri/p0sub-581638_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-581638/mri/t_sub-581638_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-581638/mri/t_sub-581638_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-581638/mri/wp0sub-581638_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-581638/report/cat_sub-581638_acq-standard_T1w.mat (file)
unlock(ok): sub-581638/report/catreport_sub-581638_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922531/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-581638/label/catROI_sub-581638_acq-headmotion1_T1w.mat (file)
add(ok): sub-581638/label/catROI_sub-581638_acq-headmotion1_T1w.xml (file)
add(ok): sub-581638/mri/it_sub-581638_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-581638/mri/it_sub-581638_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-581638/mri/m0wp1sub-581638_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-581638/mri/mwp1sub-581638_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-581638/mri/p0sub-581638_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-581638/mri/t_sub-581638_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-581638/mri/t_sub-581638_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-581638/mri/wp0sub-581638_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-581638/report/cat_sub-581638_acq-headmotion1_T1w.mat (file)
add(ok): sub-581638/report/cat_sub-581638_acq-headmotion1_T1w.xml (file)
add(ok): sub-581638/report/catlog_sub-581638_acq-headmotion1_T1w.txt (file)
add(ok): sub-581638/report/catreport_sub-581638_acq-headmotion1_T1w.pdf (file)
add(ok): sub-581638/label/catROI_sub-581638_acq-standard_T1w.mat (file)
add(ok): sub-581638/mri/it_sub-581638_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-581638/mri/it_sub-581638_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-581638/mri/m0wp1sub-581638_acq-standard_T1w.nii.gz (file)
add(ok): sub-581638/mri/mwp1sub-581638_acq-standard_T1w.nii.gz (file)
add(ok): sub-581638/mri/p0sub-581638_acq-standard_T1w.nii.gz (file)
add(ok): sub-581638/mri/t_sub-581638_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-581638/mri/t_sub-581638_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-581638/mri/wp0sub-581638_acq-standard_T1w.nii.gz (file)
add(ok): sub-581638/report/cat_sub-581638_acq-standard_T1w.mat (file)
add(ok): sub-581638/report/catreport_sub-581638_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:20:38 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:20:38 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922531/ds/sub-581638/sub-581638_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-581638/sub-581638_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 55s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
38s
Correct center-of-mass 6s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
5s
Use initial fine affine registration. 59s
SPM preprocessing 1 (estimate 2): 55s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 37s
Update probability maps 8s
76s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 10s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.22) 11s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 22s
80s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 13s
Ventricle detection 12s
Blood vessel detection 6s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 39s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
84s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 25s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
9s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 26s
ROI estimation of 'lpba40' atlas 7s
ROI estimation of 'hammers' atlas 18s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 14s
ROI estimation of 'anatomy3' atlas 20s
ROI estimation of 'julichbrain' atlas 26s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 67s
Write results 68s
296s
Quality check 10s
/var/lib/condor/execute/dir_922531/ds/sub-581638/report/catreport_sub-581638_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 19 minute(s) and 3 second(s).
Image Quality Rating (IQR): 86.27% (B)
GM volume (GMV): 47.03% (559.56 / 1189.90 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922531/ds/sub-581638/mri
Reports are saved in /var/lib/condor/execute/dir_922531/ds/sub-581638/report
Labels are saved in /var/lib/condor/execute/dir_922531/ds/sub-581638/label
------------------------------------------------------------------------
22-Oct-2025 01:39:44 - Done 'CAT12: Segmentation'
22-Oct-2025 01:39:44 - Done
Bye for now...
get(ok): sourcedata/raw/sub-581638/anat/sub-581638_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-581638/label/catROI_sub-581638_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-581638/label/catROI_sub-581638_acq-standard_T1w.mat (file)
unlock(ok): sub-581638/mri/it_sub-581638_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-581638/mri/it_sub-581638_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-581638/mri/it_sub-581638_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-581638/mri/it_sub-581638_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-581638/mri/m0wp1sub-581638_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-581638/mri/m0wp1sub-581638_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-581638/mri/mwp1sub-581638_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-581638/mri/mwp1sub-581638_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-581638/mri/p0sub-581638_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-581638/mri/p0sub-581638_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-581638/mri/t_sub-581638_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-581638/mri/t_sub-581638_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-581638/mri/t_sub-581638_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-581638/mri/t_sub-581638_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-581638/mri/wp0sub-581638_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-581638/mri/wp0sub-581638_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-581638/report/cat_sub-581638_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-581638/report/cat_sub-581638_acq-standard_T1w.mat (file)
unlock(ok): sub-581638/report/catreport_sub-581638_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-581638/report/catreport_sub-581638_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922531/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-581638/label/catROI_sub-581638_acq-headmotion2_T1w.mat (file)
add(ok): sub-581638/label/catROI_sub-581638_acq-headmotion2_T1w.xml (file)
add(ok): sub-581638/mri/it_sub-581638_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-581638/mri/it_sub-581638_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-581638/mri/m0wp1sub-581638_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-581638/mri/mwp1sub-581638_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-581638/mri/p0sub-581638_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-581638/mri/t_sub-581638_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-581638/mri/t_sub-581638_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-581638/mri/wp0sub-581638_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-581638/report/cat_sub-581638_acq-headmotion2_T1w.mat (file)
add(ok): sub-581638/report/cat_sub-581638_acq-headmotion2_T1w.xml (file)
add(ok): sub-581638/report/catlog_sub-581638_acq-headmotion2_T1w.txt (file)
add(ok): sub-581638/report/catreport_sub-581638_acq-headmotion2_T1w.pdf (file)
add(ok): sub-581638/label/catROI_sub-581638_acq-headmotion1_T1w.mat (file)
add(ok): sub-581638/label/catROI_sub-581638_acq-standard_T1w.mat (file)
add(ok): sub-581638/mri/it_sub-581638_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-581638/mri/it_sub-581638_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-581638/mri/it_sub-581638_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-581638/mri/it_sub-581638_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-581638/mri/m0wp1sub-581638_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-581638/mri/m0wp1sub-581638_acq-standard_T1w.nii.gz (file)
add(ok): sub-581638/mri/mwp1sub-581638_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-581638/mri/mwp1sub-581638_acq-standard_T1w.nii.gz (file)
add(ok): sub-581638/mri/p0sub-581638_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-581638/mri/p0sub-581638_acq-standard_T1w.nii.gz (file)
add(ok): sub-581638/mri/t_sub-581638_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-581638/mri/t_sub-581638_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-581638/mri/t_sub-581638_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-581638/mri/t_sub-581638_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-581638/mri/wp0sub-581638_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-581638/mri/wp0sub-581638_acq-standard_T1w.nii.gz (file)
add(ok): sub-581638/report/cat_sub-581638_acq-headmotion1_T1w.mat (file)
add(ok): sub-581638/report/cat_sub-581638_acq-standard_T1w.mat (file)
add(ok): sub-581638/report/catreport_sub-581638_acq-headmotion1_T1w.pdf (file)
add(ok): sub-581638/report/catreport_sub-581638_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-581638/label/catROI_sub-581638_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/label/catROI_sub-581638_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/label/catROI_sub-581638_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/it_sub-581638_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/it_sub-581638_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/it_sub-581638_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/it_sub-581638_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/it_sub-581638_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/it_sub-581638_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/m0wp1sub-581638_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/m0wp1sub-581638_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/m0wp1sub-581638_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/mwp1sub-581638_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/mwp1sub-581638_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/mwp1sub-581638_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/p0sub-581638_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/p0sub-581638_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/p0sub-581638_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/t_sub-581638_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/t_sub-581638_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/t_sub-581638_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/t_sub-581638_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/t_sub-581638_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/t_sub-581638_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/wp0sub-581638_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/wp0sub-581638_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-581638/mri/wp0sub-581638_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-581638/report/cat_sub-581638_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/report/cat_sub-581638_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/report/cat_sub-581638_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-581638/report/catreport_sub-581638_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-581638/report/catreport_sub-581638_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-581638/report/catreport_sub-581638_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001144 seconds
flock: executing git
SUCCESS
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