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ds004173-catqc/logs/10071035.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_922519/ds (dataset)
install(ok): /var/lib/condor/execute/dir_922519/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922519/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:06 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:06 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922519/ds/sub-127867/sub-127867_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-127867/sub-127867_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 56s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
40s
Correct center-of-mass 4s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
66s
SPM preprocessing 1 (estimate 2): 77s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 39s
Update probability maps 8s
80s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 9s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 12s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
85s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 12s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.29) 50s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
100s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
11s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 40s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 32s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 19s
ROI estimation of 'mori' atlas 28s
ROI estimation of 'anatomy3' atlas 40s
ROI estimation of 'julichbrain' atlas 53s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 41s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 81s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 98s
Write results 99s
509s
Quality check 12s
/var/lib/condor/execute/dir_922519/ds/sub-127867/report/catreport_sub-127867_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 17 second(s).
Image Quality Rating (IQR): 85.18% (B)
GM volume (GMV): 40.82% (556.45 / 1363.20 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922519/ds/sub-127867/mri
Reports are saved in /var/lib/condor/execute/dir_922519/ds/sub-127867/report
Labels are saved in /var/lib/condor/execute/dir_922519/ds/sub-127867/label
------------------------------------------------------------------------
22-Oct-2025 01:04:26 - Done 'CAT12: Segmentation'
22-Oct-2025 01:04:26 - Done
Bye for now...
get(ok): sourcedata/raw/sub-127867/anat/sub-127867_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922519/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_922519/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-127867/label/catROI_sub-127867_acq-headmotion2_T1w.mat (file)
add(ok): sub-127867/label/catROI_sub-127867_acq-headmotion2_T1w.xml (file)
add(ok): sub-127867/mri/it_sub-127867_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-127867/mri/it_sub-127867_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-127867/mri/m0wp1sub-127867_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-127867/mri/mwp1sub-127867_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-127867/mri/p0sub-127867_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-127867/mri/t_sub-127867_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-127867/mri/t_sub-127867_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-127867/mri/wp0sub-127867_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-127867/report/cat_sub-127867_acq-headmotion2_T1w.mat (file)
add(ok): sub-127867/report/cat_sub-127867_acq-headmotion2_T1w.xml (file)
add(ok): sub-127867/report/catlog_sub-127867_acq-headmotion2_T1w.txt (file)
add(ok): sub-127867/report/catreport_sub-127867_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:05:05 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:05:06 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922519/ds/sub-127867/sub-127867_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-127867/sub-127867_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 56s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
39s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
66s
SPM preprocessing 1 (estimate 2): 51s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
80s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 10s
99s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
87s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 16s
Ventricle detection 12s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.30) 66s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
117s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 27s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.07,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 37s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 30s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 17s
ROI estimation of 'mori' atlas 25s
ROI estimation of 'anatomy3' atlas 36s
ROI estimation of 'julichbrain' atlas 48s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 19s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 39s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 72s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 82s
Write results 83s
458s
Quality check 12s
/var/lib/condor/execute/dir_922519/ds/sub-127867/report/catreport_sub-127867_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 20 second(s).
Image Quality Rating (IQR): 87.74% (B+)
GM volume (GMV): 41.87% (573.60 / 1370.06 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922519/ds/sub-127867/mri
Reports are saved in /var/lib/condor/execute/dir_922519/ds/sub-127867/report
Labels are saved in /var/lib/condor/execute/dir_922519/ds/sub-127867/label
------------------------------------------------------------------------
22-Oct-2025 01:28:28 - Done 'CAT12: Segmentation'
22-Oct-2025 01:28:28 - Done
Bye for now...
get(ok): sourcedata/raw/sub-127867/anat/sub-127867_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-127867/label/catROI_sub-127867_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-127867/mri/it_sub-127867_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-127867/mri/it_sub-127867_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-127867/mri/m0wp1sub-127867_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-127867/mri/mwp1sub-127867_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-127867/mri/p0sub-127867_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-127867/mri/t_sub-127867_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-127867/mri/t_sub-127867_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-127867/mri/wp0sub-127867_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-127867/report/cat_sub-127867_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-127867/report/catreport_sub-127867_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922519/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-127867/label/catROI_sub-127867_acq-standard_T1w.mat (file)
add(ok): sub-127867/label/catROI_sub-127867_acq-standard_T1w.xml (file)
add(ok): sub-127867/mri/it_sub-127867_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-127867/mri/it_sub-127867_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-127867/mri/m0wp1sub-127867_acq-standard_T1w.nii.gz (file)
add(ok): sub-127867/mri/mwp1sub-127867_acq-standard_T1w.nii.gz (file)
add(ok): sub-127867/mri/p0sub-127867_acq-standard_T1w.nii.gz (file)
add(ok): sub-127867/mri/t_sub-127867_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-127867/mri/t_sub-127867_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-127867/mri/wp0sub-127867_acq-standard_T1w.nii.gz (file)
add(ok): sub-127867/report/cat_sub-127867_acq-standard_T1w.mat (file)
add(ok): sub-127867/report/cat_sub-127867_acq-standard_T1w.xml (file)
add(ok): sub-127867/report/catlog_sub-127867_acq-standard_T1w.txt (file)
add(ok): sub-127867/report/catreport_sub-127867_acq-standard_T1w.pdf (file)
add(ok): sub-127867/label/catROI_sub-127867_acq-headmotion2_T1w.mat (file)
add(ok): sub-127867/mri/it_sub-127867_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-127867/mri/it_sub-127867_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-127867/mri/m0wp1sub-127867_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-127867/mri/mwp1sub-127867_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-127867/mri/p0sub-127867_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-127867/mri/t_sub-127867_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-127867/mri/t_sub-127867_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-127867/mri/wp0sub-127867_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-127867/report/cat_sub-127867_acq-headmotion2_T1w.mat (file)
add(ok): sub-127867/report/catreport_sub-127867_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:29:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:29:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922519/ds/sub-127867/sub-127867_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-127867/sub-127867_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 55s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
39s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
69s
SPM preprocessing 1 (estimate 2): 52s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 39s
Update probability maps 8s
80s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 10s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.01) 12s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
85s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 14s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.29) 51s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
103s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 27s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 29s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 17s
ROI estimation of 'mori' atlas 25s
ROI estimation of 'anatomy3' atlas 36s
ROI estimation of 'julichbrain' atlas 46s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 19s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 36s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 66s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 72s
Write results 73s
429s
Quality check 11s
/var/lib/condor/execute/dir_922519/ds/sub-127867/report/catreport_sub-127867_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 35 second(s).
Image Quality Rating (IQR): 86.66% (B)
GM volume (GMV): 41.52% (566.30 / 1363.90 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922519/ds/sub-127867/mri
Reports are saved in /var/lib/condor/execute/dir_922519/ds/sub-127867/report
Labels are saved in /var/lib/condor/execute/dir_922519/ds/sub-127867/label
------------------------------------------------------------------------
22-Oct-2025 01:51:44 - Done 'CAT12: Segmentation'
22-Oct-2025 01:51:44 - Done
Bye for now...
get(ok): sourcedata/raw/sub-127867/anat/sub-127867_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-127867/label/catROI_sub-127867_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-127867/label/catROI_sub-127867_acq-standard_T1w.mat (file)
unlock(ok): sub-127867/mri/it_sub-127867_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-127867/mri/it_sub-127867_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-127867/mri/it_sub-127867_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-127867/mri/it_sub-127867_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-127867/mri/m0wp1sub-127867_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-127867/mri/m0wp1sub-127867_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-127867/mri/mwp1sub-127867_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-127867/mri/mwp1sub-127867_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-127867/mri/p0sub-127867_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-127867/mri/p0sub-127867_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-127867/mri/t_sub-127867_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-127867/mri/t_sub-127867_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-127867/mri/t_sub-127867_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-127867/mri/t_sub-127867_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-127867/mri/wp0sub-127867_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-127867/mri/wp0sub-127867_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-127867/report/cat_sub-127867_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-127867/report/cat_sub-127867_acq-standard_T1w.mat (file)
unlock(ok): sub-127867/report/catreport_sub-127867_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-127867/report/catreport_sub-127867_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922519/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-127867/label/catROI_sub-127867_acq-headmotion1_T1w.mat (file)
add(ok): sub-127867/label/catROI_sub-127867_acq-headmotion1_T1w.xml (file)
add(ok): sub-127867/mri/it_sub-127867_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-127867/mri/it_sub-127867_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-127867/mri/m0wp1sub-127867_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-127867/mri/mwp1sub-127867_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-127867/mri/p0sub-127867_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-127867/mri/t_sub-127867_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-127867/mri/t_sub-127867_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-127867/mri/wp0sub-127867_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-127867/report/cat_sub-127867_acq-headmotion1_T1w.mat (file)
add(ok): sub-127867/report/cat_sub-127867_acq-headmotion1_T1w.xml (file)
add(ok): sub-127867/report/catlog_sub-127867_acq-headmotion1_T1w.txt (file)
add(ok): sub-127867/report/catreport_sub-127867_acq-headmotion1_T1w.pdf (file)
add(ok): sub-127867/label/catROI_sub-127867_acq-headmotion2_T1w.mat (file)
add(ok): sub-127867/label/catROI_sub-127867_acq-standard_T1w.mat (file)
add(ok): sub-127867/mri/it_sub-127867_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-127867/mri/it_sub-127867_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-127867/mri/it_sub-127867_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-127867/mri/it_sub-127867_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-127867/mri/m0wp1sub-127867_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-127867/mri/m0wp1sub-127867_acq-standard_T1w.nii.gz (file)
add(ok): sub-127867/mri/mwp1sub-127867_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-127867/mri/mwp1sub-127867_acq-standard_T1w.nii.gz (file)
add(ok): sub-127867/mri/p0sub-127867_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-127867/mri/p0sub-127867_acq-standard_T1w.nii.gz (file)
add(ok): sub-127867/mri/t_sub-127867_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-127867/mri/t_sub-127867_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-127867/mri/t_sub-127867_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-127867/mri/t_sub-127867_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-127867/mri/wp0sub-127867_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-127867/mri/wp0sub-127867_acq-standard_T1w.nii.gz (file)
add(ok): sub-127867/report/cat_sub-127867_acq-headmotion2_T1w.mat (file)
add(ok): sub-127867/report/cat_sub-127867_acq-standard_T1w.mat (file)
add(ok): sub-127867/report/catreport_sub-127867_acq-headmotion2_T1w.pdf (file)
add(ok): sub-127867/report/catreport_sub-127867_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-127867/label/catROI_sub-127867_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/label/catROI_sub-127867_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/label/catROI_sub-127867_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/it_sub-127867_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/it_sub-127867_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/it_sub-127867_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/it_sub-127867_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/it_sub-127867_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/it_sub-127867_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/m0wp1sub-127867_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/m0wp1sub-127867_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/m0wp1sub-127867_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/mwp1sub-127867_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/mwp1sub-127867_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/mwp1sub-127867_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/p0sub-127867_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/p0sub-127867_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/p0sub-127867_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/t_sub-127867_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/t_sub-127867_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/t_sub-127867_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/t_sub-127867_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/t_sub-127867_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/t_sub-127867_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/wp0sub-127867_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/wp0sub-127867_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-127867/mri/wp0sub-127867_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-127867/report/cat_sub-127867_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/report/cat_sub-127867_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/report/cat_sub-127867_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-127867/report/catreport_sub-127867_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-127867/report/catreport_sub-127867_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-127867/report/catreport_sub-127867_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001246 seconds
flock: executing git
SUCCESS
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