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ds004173-catqc/logs/10071034.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_922512/ds (dataset)
install(ok): /var/lib/condor/execute/dir_922512/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922512/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:06 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:06 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922512/ds/sub-441269/sub-441269_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-441269/sub-441269_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 59s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
40s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
73s
SPM preprocessing 1 (estimate 2): 55s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 13s
Update Skull-Stripping 39s
Update probability maps 8s
79s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 5s
93s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.03) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
87s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 17s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 53s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
106s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
11s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 17s
ROI estimation of 'mori' atlas 26s
ROI estimation of 'anatomy3' atlas 39s
ROI estimation of 'julichbrain' atlas 53s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 43s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 86s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 117s
Write results 119s
500s
Quality check 14s
/var/lib/condor/execute/dir_922512/ds/sub-441269/report/catreport_sub-441269_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 34 second(s).
Image Quality Rating (IQR): 87.73% (B+)
GM volume (GMV): 44.44% (588.19 / 1323.45 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922512/ds/sub-441269/mri
Reports are saved in /var/lib/condor/execute/dir_922512/ds/sub-441269/report
Labels are saved in /var/lib/condor/execute/dir_922512/ds/sub-441269/label
------------------------------------------------------------------------
22-Oct-2025 01:03:42 - Done 'CAT12: Segmentation'
22-Oct-2025 01:03:42 - Done
Bye for now...
get(ok): sourcedata/raw/sub-441269/anat/sub-441269_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922512/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_922512/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-441269/label/catROI_sub-441269_acq-headmotion1_T1w.mat (file)
add(ok): sub-441269/label/catROI_sub-441269_acq-headmotion1_T1w.xml (file)
add(ok): sub-441269/mri/it_sub-441269_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-441269/mri/it_sub-441269_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-441269/mri/m0wp1sub-441269_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-441269/mri/mwp1sub-441269_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-441269/mri/p0sub-441269_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-441269/mri/t_sub-441269_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-441269/mri/t_sub-441269_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-441269/mri/wp0sub-441269_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-441269/report/cat_sub-441269_acq-headmotion1_T1w.mat (file)
add(ok): sub-441269/report/cat_sub-441269_acq-headmotion1_T1w.xml (file)
add(ok): sub-441269/report/catlog_sub-441269_acq-headmotion1_T1w.txt (file)
add(ok): sub-441269/report/catreport_sub-441269_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:04:26 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:04:26 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922512/ds/sub-441269/sub-441269_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-441269/sub-441269_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 60s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
39s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
71s
SPM preprocessing 1 (estimate 2): 50s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 14s
Update Skull-Stripping 39s
Update probability maps 8s
79s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 9s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
86s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 13s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 53s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
103s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
11s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 20s
ROI estimation of 'anatomy3' atlas 33s
ROI estimation of 'julichbrain' atlas 49s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 40s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 81s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 115s
Write results 117s
462s
Quality check 14s
/var/lib/condor/execute/dir_922512/ds/sub-441269/report/catreport_sub-441269_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 46 second(s).
Image Quality Rating (IQR): 87.80% (B+)
GM volume (GMV): 45.35% (598.04 / 1318.66 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922512/ds/sub-441269/mri
Reports are saved in /var/lib/condor/execute/dir_922512/ds/sub-441269/report
Labels are saved in /var/lib/condor/execute/dir_922512/ds/sub-441269/label
------------------------------------------------------------------------
22-Oct-2025 01:27:15 - Done 'CAT12: Segmentation'
22-Oct-2025 01:27:15 - Done
Bye for now...
get(ok): sourcedata/raw/sub-441269/anat/sub-441269_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-441269/label/catROI_sub-441269_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-441269/mri/it_sub-441269_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-441269/mri/it_sub-441269_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-441269/mri/m0wp1sub-441269_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-441269/mri/mwp1sub-441269_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-441269/mri/p0sub-441269_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-441269/mri/t_sub-441269_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-441269/mri/t_sub-441269_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-441269/mri/wp0sub-441269_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-441269/report/cat_sub-441269_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-441269/report/catreport_sub-441269_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922512/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-441269/label/catROI_sub-441269_acq-standard_T1w.mat (file)
add(ok): sub-441269/label/catROI_sub-441269_acq-standard_T1w.xml (file)
add(ok): sub-441269/mri/it_sub-441269_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-441269/mri/it_sub-441269_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-441269/mri/m0wp1sub-441269_acq-standard_T1w.nii.gz (file)
add(ok): sub-441269/mri/mwp1sub-441269_acq-standard_T1w.nii.gz (file)
add(ok): sub-441269/mri/p0sub-441269_acq-standard_T1w.nii.gz (file)
add(ok): sub-441269/mri/t_sub-441269_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-441269/mri/t_sub-441269_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-441269/mri/wp0sub-441269_acq-standard_T1w.nii.gz (file)
add(ok): sub-441269/report/cat_sub-441269_acq-standard_T1w.mat (file)
add(ok): sub-441269/report/cat_sub-441269_acq-standard_T1w.xml (file)
add(ok): sub-441269/report/catlog_sub-441269_acq-standard_T1w.txt (file)
add(ok): sub-441269/report/catreport_sub-441269_acq-standard_T1w.pdf (file)
add(ok): sub-441269/label/catROI_sub-441269_acq-headmotion1_T1w.mat (file)
add(ok): sub-441269/mri/it_sub-441269_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-441269/mri/it_sub-441269_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-441269/mri/m0wp1sub-441269_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-441269/mri/mwp1sub-441269_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-441269/mri/p0sub-441269_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-441269/mri/t_sub-441269_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-441269/mri/t_sub-441269_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-441269/mri/wp0sub-441269_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-441269/report/cat_sub-441269_acq-headmotion1_T1w.mat (file)
add(ok): sub-441269/report/catreport_sub-441269_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:28:00 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:28:00 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922512/ds/sub-441269/sub-441269_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-441269/sub-441269_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 61s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
39s
Correct center-of-mass 4s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
71s
SPM preprocessing 1 (estimate 2): 55s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 39s
Update probability maps 8s
79s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 8s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
85s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 12s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 52s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
101s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
8s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 15s
ROI estimation of 'anatomy3' atlas 25s
ROI estimation of 'julichbrain' atlas 35s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 19s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 37s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 76s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 103s
Write results 106s
409s
Quality check 14s
/var/lib/condor/execute/dir_922512/ds/sub-441269/report/catreport_sub-441269_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 54 second(s).
Image Quality Rating (IQR): 87.54% (B+)
GM volume (GMV): 44.00% (582.74 / 1324.53 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922512/ds/sub-441269/mri
Reports are saved in /var/lib/condor/execute/dir_922512/ds/sub-441269/report
Labels are saved in /var/lib/condor/execute/dir_922512/ds/sub-441269/label
------------------------------------------------------------------------
22-Oct-2025 01:49:56 - Done 'CAT12: Segmentation'
22-Oct-2025 01:49:56 - Done
Bye for now...
get(ok): sourcedata/raw/sub-441269/anat/sub-441269_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-441269/label/catROI_sub-441269_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-441269/label/catROI_sub-441269_acq-standard_T1w.mat (file)
unlock(ok): sub-441269/mri/it_sub-441269_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-441269/mri/it_sub-441269_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-441269/mri/it_sub-441269_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-441269/mri/it_sub-441269_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-441269/mri/m0wp1sub-441269_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-441269/mri/m0wp1sub-441269_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-441269/mri/mwp1sub-441269_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-441269/mri/mwp1sub-441269_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-441269/mri/p0sub-441269_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-441269/mri/p0sub-441269_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-441269/mri/t_sub-441269_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-441269/mri/t_sub-441269_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-441269/mri/t_sub-441269_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-441269/mri/t_sub-441269_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-441269/mri/wp0sub-441269_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-441269/mri/wp0sub-441269_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-441269/report/cat_sub-441269_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-441269/report/cat_sub-441269_acq-standard_T1w.mat (file)
unlock(ok): sub-441269/report/catreport_sub-441269_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-441269/report/catreport_sub-441269_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922512/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-441269/label/catROI_sub-441269_acq-headmotion2_T1w.mat (file)
add(ok): sub-441269/label/catROI_sub-441269_acq-headmotion2_T1w.xml (file)
add(ok): sub-441269/mri/it_sub-441269_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-441269/mri/it_sub-441269_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-441269/mri/m0wp1sub-441269_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-441269/mri/mwp1sub-441269_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-441269/mri/p0sub-441269_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-441269/mri/t_sub-441269_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-441269/mri/t_sub-441269_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-441269/mri/wp0sub-441269_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-441269/report/cat_sub-441269_acq-headmotion2_T1w.mat (file)
add(ok): sub-441269/report/cat_sub-441269_acq-headmotion2_T1w.xml (file)
add(ok): sub-441269/report/catlog_sub-441269_acq-headmotion2_T1w.txt (file)
add(ok): sub-441269/report/catreport_sub-441269_acq-headmotion2_T1w.pdf (file)
add(ok): sub-441269/label/catROI_sub-441269_acq-headmotion1_T1w.mat (file)
add(ok): sub-441269/label/catROI_sub-441269_acq-standard_T1w.mat (file)
add(ok): sub-441269/mri/it_sub-441269_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-441269/mri/it_sub-441269_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-441269/mri/it_sub-441269_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-441269/mri/it_sub-441269_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-441269/mri/m0wp1sub-441269_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-441269/mri/m0wp1sub-441269_acq-standard_T1w.nii.gz (file)
add(ok): sub-441269/mri/mwp1sub-441269_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-441269/mri/mwp1sub-441269_acq-standard_T1w.nii.gz (file)
add(ok): sub-441269/mri/p0sub-441269_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-441269/mri/p0sub-441269_acq-standard_T1w.nii.gz (file)
add(ok): sub-441269/mri/t_sub-441269_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-441269/mri/t_sub-441269_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-441269/mri/t_sub-441269_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-441269/mri/t_sub-441269_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-441269/mri/wp0sub-441269_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-441269/mri/wp0sub-441269_acq-standard_T1w.nii.gz (file)
add(ok): sub-441269/report/cat_sub-441269_acq-headmotion1_T1w.mat (file)
add(ok): sub-441269/report/cat_sub-441269_acq-standard_T1w.mat (file)
add(ok): sub-441269/report/catreport_sub-441269_acq-headmotion1_T1w.pdf (file)
add(ok): sub-441269/report/catreport_sub-441269_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-441269/label/catROI_sub-441269_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/label/catROI_sub-441269_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/label/catROI_sub-441269_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/it_sub-441269_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/it_sub-441269_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/it_sub-441269_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/it_sub-441269_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/it_sub-441269_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/it_sub-441269_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/m0wp1sub-441269_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/m0wp1sub-441269_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/m0wp1sub-441269_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/mwp1sub-441269_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/mwp1sub-441269_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/mwp1sub-441269_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/p0sub-441269_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/p0sub-441269_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/p0sub-441269_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/t_sub-441269_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/t_sub-441269_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/t_sub-441269_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/t_sub-441269_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/t_sub-441269_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/t_sub-441269_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/wp0sub-441269_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/wp0sub-441269_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-441269/mri/wp0sub-441269_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-441269/report/cat_sub-441269_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/report/cat_sub-441269_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/report/cat_sub-441269_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-441269/report/catreport_sub-441269_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-441269/report/catreport_sub-441269_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-441269/report/catreport_sub-441269_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000973 seconds
flock: executing git
SUCCESS
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