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ds004173-catqc/logs/10071030.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_922457/ds (dataset)
install(ok): /var/lib/condor/execute/dir_922457/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922457/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:06 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:06 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922457/ds/sub-988653/sub-988653_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-988653/sub-988653_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 50s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
38s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
6s
Use initial fine affine registration. 55s
SPM preprocessing 1 (estimate 2): 50s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 13s
Update Skull-Stripping 39s
Update probability maps 8s
79s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 10s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 24s
83s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 13s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 55s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
105s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 25s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.07,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
6s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 26s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 14s
ROI estimation of 'mori' atlas 18s
ROI estimation of 'anatomy3' atlas 34s
ROI estimation of 'julichbrain' atlas 50s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 41s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 86s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 118s
Write results 120s
466s
Quality check 14s
/var/lib/condor/execute/dir_922457/ds/sub-988653/report/catreport_sub-988653_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 42 second(s).
Image Quality Rating (IQR): 87.89% (B+)
GM volume (GMV): 44.12% (575.36 / 1304.12 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922457/ds/sub-988653/mri
Reports are saved in /var/lib/condor/execute/dir_922457/ds/sub-988653/report
Labels are saved in /var/lib/condor/execute/dir_922457/ds/sub-988653/label
------------------------------------------------------------------------
22-Oct-2025 01:02:51 - Done 'CAT12: Segmentation'
22-Oct-2025 01:02:51 - Done
Bye for now...
get(ok): sourcedata/raw/sub-988653/anat/sub-988653_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922457/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_922457/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-988653/label/catROI_sub-988653_acq-headmotion1_T1w.mat (file)
add(ok): sub-988653/label/catROI_sub-988653_acq-headmotion1_T1w.xml (file)
add(ok): sub-988653/mri/it_sub-988653_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-988653/mri/it_sub-988653_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-988653/mri/m0wp1sub-988653_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-988653/mri/mwp1sub-988653_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-988653/mri/p0sub-988653_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-988653/mri/t_sub-988653_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-988653/mri/t_sub-988653_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-988653/mri/wp0sub-988653_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-988653/report/cat_sub-988653_acq-headmotion1_T1w.mat (file)
add(ok): sub-988653/report/cat_sub-988653_acq-headmotion1_T1w.xml (file)
add(ok): sub-988653/report/catlog_sub-988653_acq-headmotion1_T1w.txt (file)
add(ok): sub-988653/report/catreport_sub-988653_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:03:48 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:03:48 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922457/ds/sub-988653/sub-988653_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-988653/sub-988653_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 53s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
38s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
5s
Use initial fine affine registration. 55s
SPM preprocessing 1 (estimate 2): 54s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 39s
Update probability maps 8s
79s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 7s
96s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
85s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 11s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 51s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
98s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 25s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.07,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 16s
ROI estimation of 'anatomy3' atlas 23s
ROI estimation of 'julichbrain' atlas 31s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 13s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 29s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 76s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 116s
Write results 119s
399s
Quality check 14s
/var/lib/condor/execute/dir_922457/ds/sub-988653/report/catreport_sub-988653_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 40 second(s).
Image Quality Rating (IQR): 88.11% (B+)
GM volume (GMV): 43.52% (572.72 / 1315.95 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922457/ds/sub-988653/mri
Reports are saved in /var/lib/condor/execute/dir_922457/ds/sub-988653/report
Labels are saved in /var/lib/condor/execute/dir_922457/ds/sub-988653/label
------------------------------------------------------------------------
22-Oct-2025 01:25:31 - Done 'CAT12: Segmentation'
22-Oct-2025 01:25:31 - Done
Bye for now...
get(ok): sourcedata/raw/sub-988653/anat/sub-988653_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-988653/label/catROI_sub-988653_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-988653/mri/it_sub-988653_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-988653/mri/it_sub-988653_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-988653/mri/m0wp1sub-988653_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-988653/mri/mwp1sub-988653_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-988653/mri/p0sub-988653_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-988653/mri/t_sub-988653_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-988653/mri/t_sub-988653_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-988653/mri/wp0sub-988653_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-988653/report/cat_sub-988653_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-988653/report/catreport_sub-988653_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922457/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-988653/label/catROI_sub-988653_acq-headmotion2_T1w.mat (file)
add(ok): sub-988653/label/catROI_sub-988653_acq-headmotion2_T1w.xml (file)
add(ok): sub-988653/mri/it_sub-988653_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-988653/mri/it_sub-988653_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-988653/mri/m0wp1sub-988653_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-988653/mri/mwp1sub-988653_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-988653/mri/p0sub-988653_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-988653/mri/t_sub-988653_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-988653/mri/t_sub-988653_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-988653/mri/wp0sub-988653_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-988653/report/cat_sub-988653_acq-headmotion2_T1w.mat (file)
add(ok): sub-988653/report/cat_sub-988653_acq-headmotion2_T1w.xml (file)
add(ok): sub-988653/report/catlog_sub-988653_acq-headmotion2_T1w.txt (file)
add(ok): sub-988653/report/catreport_sub-988653_acq-headmotion2_T1w.pdf (file)
add(ok): sub-988653/label/catROI_sub-988653_acq-headmotion1_T1w.mat (file)
add(ok): sub-988653/mri/it_sub-988653_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-988653/mri/it_sub-988653_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-988653/mri/m0wp1sub-988653_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-988653/mri/mwp1sub-988653_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-988653/mri/p0sub-988653_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-988653/mri/t_sub-988653_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-988653/mri/t_sub-988653_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-988653/mri/wp0sub-988653_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-988653/report/cat_sub-988653_acq-headmotion1_T1w.mat (file)
add(ok): sub-988653/report/catreport_sub-988653_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:26:33 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:26:33 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922457/ds/sub-988653/sub-988653_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-988653/sub-988653_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 56s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
40s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
5s
Use initial fine affine registration. 54s
SPM preprocessing 1 (estimate 2): 48s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 39s
Update probability maps 8s
79s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 3s
91s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
85s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 14s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 58s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
109s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 25s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.07,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 14s
ROI estimation of 'anatomy3' atlas 21s
ROI estimation of 'julichbrain' atlas 29s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 54s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 100s
Write results 103s
349s
Quality check 13s
/var/lib/condor/execute/dir_922457/ds/sub-988653/report/catreport_sub-988653_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 20 minute(s) and 48 second(s).
Image Quality Rating (IQR): 88.07% (B+)
GM volume (GMV): 44.52% (583.97 / 1311.79 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922457/ds/sub-988653/mri
Reports are saved in /var/lib/condor/execute/dir_922457/ds/sub-988653/report
Labels are saved in /var/lib/condor/execute/dir_922457/ds/sub-988653/label
------------------------------------------------------------------------
22-Oct-2025 01:47:24 - Done 'CAT12: Segmentation'
22-Oct-2025 01:47:24 - Done
Bye for now...
get(ok): sourcedata/raw/sub-988653/anat/sub-988653_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-988653/label/catROI_sub-988653_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-988653/label/catROI_sub-988653_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-988653/mri/it_sub-988653_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-988653/mri/it_sub-988653_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-988653/mri/it_sub-988653_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-988653/mri/it_sub-988653_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-988653/mri/m0wp1sub-988653_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-988653/mri/m0wp1sub-988653_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-988653/mri/mwp1sub-988653_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-988653/mri/mwp1sub-988653_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-988653/mri/p0sub-988653_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-988653/mri/p0sub-988653_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-988653/mri/t_sub-988653_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-988653/mri/t_sub-988653_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-988653/mri/t_sub-988653_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-988653/mri/t_sub-988653_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-988653/mri/wp0sub-988653_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-988653/mri/wp0sub-988653_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-988653/report/cat_sub-988653_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-988653/report/cat_sub-988653_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-988653/report/catreport_sub-988653_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-988653/report/catreport_sub-988653_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922457/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-988653/label/catROI_sub-988653_acq-standard_T1w.mat (file)
add(ok): sub-988653/label/catROI_sub-988653_acq-standard_T1w.xml (file)
add(ok): sub-988653/mri/it_sub-988653_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-988653/mri/it_sub-988653_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-988653/mri/m0wp1sub-988653_acq-standard_T1w.nii.gz (file)
add(ok): sub-988653/mri/mwp1sub-988653_acq-standard_T1w.nii.gz (file)
add(ok): sub-988653/mri/p0sub-988653_acq-standard_T1w.nii.gz (file)
add(ok): sub-988653/mri/t_sub-988653_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-988653/mri/t_sub-988653_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-988653/mri/wp0sub-988653_acq-standard_T1w.nii.gz (file)
add(ok): sub-988653/report/cat_sub-988653_acq-standard_T1w.mat (file)
add(ok): sub-988653/report/cat_sub-988653_acq-standard_T1w.xml (file)
add(ok): sub-988653/report/catlog_sub-988653_acq-standard_T1w.txt (file)
add(ok): sub-988653/report/catreport_sub-988653_acq-standard_T1w.pdf (file)
add(ok): sub-988653/label/catROI_sub-988653_acq-headmotion1_T1w.mat (file)
add(ok): sub-988653/label/catROI_sub-988653_acq-headmotion2_T1w.mat (file)
add(ok): sub-988653/mri/it_sub-988653_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-988653/mri/it_sub-988653_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-988653/mri/it_sub-988653_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-988653/mri/it_sub-988653_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-988653/mri/m0wp1sub-988653_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-988653/mri/m0wp1sub-988653_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-988653/mri/mwp1sub-988653_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-988653/mri/mwp1sub-988653_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-988653/mri/p0sub-988653_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-988653/mri/p0sub-988653_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-988653/mri/t_sub-988653_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-988653/mri/t_sub-988653_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-988653/mri/t_sub-988653_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-988653/mri/t_sub-988653_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-988653/mri/wp0sub-988653_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-988653/mri/wp0sub-988653_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-988653/report/cat_sub-988653_acq-headmotion1_T1w.mat (file)
add(ok): sub-988653/report/cat_sub-988653_acq-headmotion2_T1w.mat (file)
add(ok): sub-988653/report/catreport_sub-988653_acq-headmotion1_T1w.pdf (file)
add(ok): sub-988653/report/catreport_sub-988653_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-988653/label/catROI_sub-988653_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/label/catROI_sub-988653_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/label/catROI_sub-988653_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/it_sub-988653_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/it_sub-988653_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/it_sub-988653_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/it_sub-988653_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/it_sub-988653_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/it_sub-988653_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/m0wp1sub-988653_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/m0wp1sub-988653_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/m0wp1sub-988653_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/mwp1sub-988653_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/mwp1sub-988653_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/mwp1sub-988653_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/p0sub-988653_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/p0sub-988653_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/p0sub-988653_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/t_sub-988653_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/t_sub-988653_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/t_sub-988653_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/t_sub-988653_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/t_sub-988653_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/t_sub-988653_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/wp0sub-988653_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/wp0sub-988653_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-988653/mri/wp0sub-988653_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-988653/report/cat_sub-988653_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/report/cat_sub-988653_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/report/cat_sub-988653_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-988653/report/catreport_sub-988653_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-988653/report/catreport_sub-988653_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-988653/report/catreport_sub-988653_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 61.193217 seconds
flock: executing git
SUCCESS
View git blame Copy permalink