f.hoffstaedter/ds004173-catqc
1
0
Fork 0
Code Pull requests Packages Activity
ds004173-catqc/logs/10071029.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

597 lines
37 KiB (Stored with Git Annex)
Text
Raw Permalink Blame History

This file contains invisible Unicode characters

This file contains invisible Unicode characters that are indistinguishable to humans but may be processed differently by a computer. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

install(ok): /var/lib/condor/execute/dir_922455/ds (dataset)
install(ok): /var/lib/condor/execute/dir_922455/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922455/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:04 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:04 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922455/ds/sub-460834/sub-460834_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-460834/sub-460834_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 68s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 7s
42s
Correct center-of-mass 3s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 55s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 46s
Update probability maps 8s
89s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 6s
94s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.15) 16s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
99s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 20s
Ventricle detection 16s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.20) 81s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
145s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 15s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 29s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 51s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 67s
Write results 68s
314s
Quality check 14s
/var/lib/condor/execute/dir_922455/ds/sub-460834/report/catreport_sub-460834_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 20 second(s).
Image Quality Rating (IQR): 84.69% (B)
GM volume (GMV): 42.50% (743.74 / 1749.87 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922455/ds/sub-460834/mri
Reports are saved in /var/lib/condor/execute/dir_922455/ds/sub-460834/report
Labels are saved in /var/lib/condor/execute/dir_922455/ds/sub-460834/label
------------------------------------------------------------------------
22-Oct-2025 01:02:26 - Done 'CAT12: Segmentation'
22-Oct-2025 01:02:26 - Done
Bye for now...
get(ok): sourcedata/raw/sub-460834/anat/sub-460834_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_922455/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_922455/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-460834/label/catROI_sub-460834_acq-headmotion1_T1w.mat (file)
add(ok): sub-460834/label/catROI_sub-460834_acq-headmotion1_T1w.xml (file)
add(ok): sub-460834/mri/it_sub-460834_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-460834/mri/it_sub-460834_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-460834/mri/m0wp1sub-460834_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-460834/mri/mwp1sub-460834_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-460834/mri/p0sub-460834_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-460834/mri/t_sub-460834_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-460834/mri/t_sub-460834_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-460834/mri/wp0sub-460834_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-460834/report/cat_sub-460834_acq-headmotion1_T1w.mat (file)
add(ok): sub-460834/report/cat_sub-460834_acq-headmotion1_T1w.xml (file)
add(ok): sub-460834/report/catlog_sub-460834_acq-headmotion1_T1w.txt (file)
add(ok): sub-460834/report/catreport_sub-460834_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:03:05 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:03:05 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922455/ds/sub-460834/sub-460834_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-460834/sub-460834_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 70s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 3s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 3s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 50s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 8s
86s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 5s
93s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.14) 16s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
99s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 20s
Ventricle detection 18s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.20) 77s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
144s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 15s
ROI estimation of 'anatomy3' atlas 21s
ROI estimation of 'julichbrain' atlas 27s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 50s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 67s
Write results 68s
305s
Quality check 14s
/var/lib/condor/execute/dir_922455/ds/sub-460834/report/catreport_sub-460834_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 4 second(s).
Image Quality Rating (IQR): 87.69% (B+)
GM volume (GMV): 43.07% (757.33 / 1758.29 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922455/ds/sub-460834/mri
Reports are saved in /var/lib/condor/execute/dir_922455/ds/sub-460834/report
Labels are saved in /var/lib/condor/execute/dir_922455/ds/sub-460834/label
------------------------------------------------------------------------
22-Oct-2025 01:25:11 - Done 'CAT12: Segmentation'
22-Oct-2025 01:25:11 - Done
Bye for now...
get(ok): sourcedata/raw/sub-460834/anat/sub-460834_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-460834/label/catROI_sub-460834_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-460834/mri/it_sub-460834_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-460834/mri/it_sub-460834_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-460834/mri/m0wp1sub-460834_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-460834/mri/mwp1sub-460834_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-460834/mri/p0sub-460834_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-460834/mri/t_sub-460834_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-460834/mri/t_sub-460834_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-460834/mri/wp0sub-460834_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-460834/report/cat_sub-460834_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-460834/report/catreport_sub-460834_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922455/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-460834/label/catROI_sub-460834_acq-standard_T1w.mat (file)
add(ok): sub-460834/label/catROI_sub-460834_acq-standard_T1w.xml (file)
add(ok): sub-460834/mri/it_sub-460834_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-460834/mri/it_sub-460834_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-460834/mri/m0wp1sub-460834_acq-standard_T1w.nii.gz (file)
add(ok): sub-460834/mri/mwp1sub-460834_acq-standard_T1w.nii.gz (file)
add(ok): sub-460834/mri/p0sub-460834_acq-standard_T1w.nii.gz (file)
add(ok): sub-460834/mri/t_sub-460834_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-460834/mri/t_sub-460834_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-460834/mri/wp0sub-460834_acq-standard_T1w.nii.gz (file)
add(ok): sub-460834/report/cat_sub-460834_acq-standard_T1w.mat (file)
add(ok): sub-460834/report/cat_sub-460834_acq-standard_T1w.xml (file)
add(ok): sub-460834/report/catlog_sub-460834_acq-standard_T1w.txt (file)
add(ok): sub-460834/report/catreport_sub-460834_acq-standard_T1w.pdf (file)
add(ok): sub-460834/label/catROI_sub-460834_acq-headmotion1_T1w.mat (file)
add(ok): sub-460834/mri/it_sub-460834_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-460834/mri/it_sub-460834_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-460834/mri/m0wp1sub-460834_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-460834/mri/mwp1sub-460834_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-460834/mri/p0sub-460834_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-460834/mri/t_sub-460834_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-460834/mri/t_sub-460834_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-460834/mri/wp0sub-460834_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-460834/report/cat_sub-460834_acq-headmotion1_T1w.mat (file)
add(ok): sub-460834/report/catreport_sub-460834_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:25:50 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:25:50 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_922455/ds/sub-460834/sub-460834_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-460834/sub-460834_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 69s
Affine preprocessing (APP)
Initialize 7s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 3s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
83s
SPM preprocessing 1 (estimate 2): 52s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 44s
Update probability maps 8s
87s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 10s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.22) 15s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
97s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 20s
Ventricle detection 17s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.20) 73s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
137s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 26s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 14s
ROI estimation of 'anatomy3' atlas 19s
ROI estimation of 'julichbrain' atlas 26s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 48s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 64s
Write results 65s
293s
Quality check 14s
/var/lib/condor/execute/dir_922455/ds/sub-460834/report/catreport_sub-460834_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 52 second(s).
Image Quality Rating (IQR): 83.81% (B)
GM volume (GMV): 41.63% (722.12 / 1734.67 ml)
Segmentations are saved in /var/lib/condor/execute/dir_922455/ds/sub-460834/mri
Reports are saved in /var/lib/condor/execute/dir_922455/ds/sub-460834/report
Labels are saved in /var/lib/condor/execute/dir_922455/ds/sub-460834/label
------------------------------------------------------------------------
22-Oct-2025 01:47:45 - Done 'CAT12: Segmentation'
22-Oct-2025 01:47:45 - Done
Bye for now...
get(ok): sourcedata/raw/sub-460834/anat/sub-460834_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-460834/label/catROI_sub-460834_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-460834/label/catROI_sub-460834_acq-standard_T1w.mat (file)
unlock(ok): sub-460834/mri/it_sub-460834_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-460834/mri/it_sub-460834_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-460834/mri/it_sub-460834_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-460834/mri/it_sub-460834_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-460834/mri/m0wp1sub-460834_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-460834/mri/m0wp1sub-460834_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-460834/mri/mwp1sub-460834_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-460834/mri/mwp1sub-460834_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-460834/mri/p0sub-460834_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-460834/mri/p0sub-460834_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-460834/mri/t_sub-460834_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-460834/mri/t_sub-460834_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-460834/mri/t_sub-460834_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-460834/mri/t_sub-460834_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-460834/mri/wp0sub-460834_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-460834/mri/wp0sub-460834_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-460834/report/cat_sub-460834_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-460834/report/cat_sub-460834_acq-standard_T1w.mat (file)
unlock(ok): sub-460834/report/catreport_sub-460834_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-460834/report/catreport_sub-460834_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_922455/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-460834/label/catROI_sub-460834_acq-headmotion2_T1w.mat (file)
add(ok): sub-460834/label/catROI_sub-460834_acq-headmotion2_T1w.xml (file)
add(ok): sub-460834/mri/it_sub-460834_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-460834/mri/it_sub-460834_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-460834/mri/m0wp1sub-460834_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-460834/mri/mwp1sub-460834_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-460834/mri/p0sub-460834_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-460834/mri/t_sub-460834_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-460834/mri/t_sub-460834_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-460834/mri/wp0sub-460834_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-460834/report/cat_sub-460834_acq-headmotion2_T1w.mat (file)
add(ok): sub-460834/report/cat_sub-460834_acq-headmotion2_T1w.xml (file)
add(ok): sub-460834/report/catlog_sub-460834_acq-headmotion2_T1w.txt (file)
add(ok): sub-460834/report/catreport_sub-460834_acq-headmotion2_T1w.pdf (file)
add(ok): sub-460834/label/catROI_sub-460834_acq-headmotion1_T1w.mat (file)
add(ok): sub-460834/label/catROI_sub-460834_acq-standard_T1w.mat (file)
add(ok): sub-460834/mri/it_sub-460834_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-460834/mri/it_sub-460834_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-460834/mri/it_sub-460834_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-460834/mri/it_sub-460834_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-460834/mri/m0wp1sub-460834_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-460834/mri/m0wp1sub-460834_acq-standard_T1w.nii.gz (file)
add(ok): sub-460834/mri/mwp1sub-460834_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-460834/mri/mwp1sub-460834_acq-standard_T1w.nii.gz (file)
add(ok): sub-460834/mri/p0sub-460834_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-460834/mri/p0sub-460834_acq-standard_T1w.nii.gz (file)
add(ok): sub-460834/mri/t_sub-460834_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-460834/mri/t_sub-460834_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-460834/mri/t_sub-460834_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-460834/mri/t_sub-460834_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-460834/mri/wp0sub-460834_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-460834/mri/wp0sub-460834_acq-standard_T1w.nii.gz (file)
add(ok): sub-460834/report/cat_sub-460834_acq-headmotion1_T1w.mat (file)
add(ok): sub-460834/report/cat_sub-460834_acq-standard_T1w.mat (file)
add(ok): sub-460834/report/catreport_sub-460834_acq-headmotion1_T1w.pdf (file)
add(ok): sub-460834/report/catreport_sub-460834_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-460834/label/catROI_sub-460834_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/label/catROI_sub-460834_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/label/catROI_sub-460834_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/it_sub-460834_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/it_sub-460834_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/it_sub-460834_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/it_sub-460834_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/it_sub-460834_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/it_sub-460834_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/m0wp1sub-460834_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/m0wp1sub-460834_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/m0wp1sub-460834_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/mwp1sub-460834_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/mwp1sub-460834_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/mwp1sub-460834_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/p0sub-460834_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/p0sub-460834_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/p0sub-460834_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/t_sub-460834_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/t_sub-460834_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/t_sub-460834_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/t_sub-460834_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/t_sub-460834_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/t_sub-460834_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/wp0sub-460834_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/wp0sub-460834_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-460834/mri/wp0sub-460834_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-460834/report/cat_sub-460834_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/report/cat_sub-460834_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/report/cat_sub-460834_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-460834/report/catreport_sub-460834_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-460834/report/catreport_sub-460834_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-460834/report/catreport_sub-460834_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000780 seconds
flock: executing git
SUCCESS
View git blame Copy permalink