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ds004173-catqc/logs/10071028.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1149432/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1149432/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149432/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:21 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:21 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149432/ds/sub-261051/sub-261051_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-261051/sub-261051_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
39s
Correct center-of-mass 6s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
69s
SPM preprocessing 1 (estimate 2): 48s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
79s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 10s
99s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.08) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
90s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 16s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 56s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
109s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 27s
AMAP peaks: [CSF,GM,WM] = [0.360.05,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 30s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 19s
ROI estimation of 'anatomy3' atlas 27s
ROI estimation of 'julichbrain' atlas 36s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 30s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 64s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 89s
Write results 91s
385s
Quality check 12s
/var/lib/condor/execute/dir_1149432/ds/sub-261051/report/catreport_sub-261051_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 34 second(s).
Image Quality Rating (IQR): 86.46% (B)
GM volume (GMV): 50.34% (634.03 / 1259.53 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149432/ds/sub-261051/mri
Reports are saved in /var/lib/condor/execute/dir_1149432/ds/sub-261051/report
Labels are saved in /var/lib/condor/execute/dir_1149432/ds/sub-261051/label
------------------------------------------------------------------------
22-Oct-2025 01:01:57 - Done 'CAT12: Segmentation'
22-Oct-2025 01:01:58 - Done
Bye for now...
get(ok): sourcedata/raw/sub-261051/anat/sub-261051_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149432/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1149432/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-261051/label/catROI_sub-261051_acq-standard_T1w.mat (file)
add(ok): sub-261051/label/catROI_sub-261051_acq-standard_T1w.xml (file)
add(ok): sub-261051/mri/it_sub-261051_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-261051/mri/it_sub-261051_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-261051/mri/m0wp1sub-261051_acq-standard_T1w.nii.gz (file)
add(ok): sub-261051/mri/mwp1sub-261051_acq-standard_T1w.nii.gz (file)
add(ok): sub-261051/mri/p0sub-261051_acq-standard_T1w.nii.gz (file)
add(ok): sub-261051/mri/t_sub-261051_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-261051/mri/t_sub-261051_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-261051/mri/wp0sub-261051_acq-standard_T1w.nii.gz (file)
add(ok): sub-261051/report/cat_sub-261051_acq-standard_T1w.mat (file)
add(ok): sub-261051/report/cat_sub-261051_acq-standard_T1w.xml (file)
add(ok): sub-261051/report/catlog_sub-261051_acq-standard_T1w.txt (file)
add(ok): sub-261051/report/catreport_sub-261051_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:02:39 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:02:39 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149432/ds/sub-261051/sub-261051_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-261051/sub-261051_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 56s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 6s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
76s
SPM preprocessing 1 (estimate 2): 49s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 39s
Update probability maps 8s
79s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 8s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.06) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 24s
87s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 13s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 61s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
111s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 27s
AMAP peaks: [CSF,GM,WM] = [0.360.05,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 14s
ROI estimation of 'anatomy3' atlas 20s
ROI estimation of 'julichbrain' atlas 27s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 52s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 74s
Write results 76s
312s
Quality check 12s
/var/lib/condor/execute/dir_1149432/ds/sub-261051/report/catreport_sub-261051_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 20 minute(s) and 25 second(s).
Image Quality Rating (IQR): 81.27% (B-)
GM volume (GMV): 48.62% (614.61 / 1264.21 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149432/ds/sub-261051/mri
Reports are saved in /var/lib/condor/execute/dir_1149432/ds/sub-261051/report
Labels are saved in /var/lib/condor/execute/dir_1149432/ds/sub-261051/label
------------------------------------------------------------------------
22-Oct-2025 01:23:06 - Done 'CAT12: Segmentation'
22-Oct-2025 01:23:06 - Done
Bye for now...
get(ok): sourcedata/raw/sub-261051/anat/sub-261051_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-261051/label/catROI_sub-261051_acq-standard_T1w.mat (file)
unlock(ok): sub-261051/mri/it_sub-261051_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-261051/mri/it_sub-261051_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-261051/mri/m0wp1sub-261051_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-261051/mri/mwp1sub-261051_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-261051/mri/p0sub-261051_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-261051/mri/t_sub-261051_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-261051/mri/t_sub-261051_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-261051/mri/wp0sub-261051_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-261051/report/cat_sub-261051_acq-standard_T1w.mat (file)
unlock(ok): sub-261051/report/catreport_sub-261051_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149432/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-261051/label/catROI_sub-261051_acq-headmotion1_T1w.mat (file)
add(ok): sub-261051/label/catROI_sub-261051_acq-headmotion1_T1w.xml (file)
add(ok): sub-261051/mri/it_sub-261051_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-261051/mri/it_sub-261051_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-261051/mri/m0wp1sub-261051_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-261051/mri/mwp1sub-261051_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-261051/mri/p0sub-261051_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-261051/mri/t_sub-261051_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-261051/mri/t_sub-261051_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-261051/mri/wp0sub-261051_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-261051/report/cat_sub-261051_acq-headmotion1_T1w.mat (file)
add(ok): sub-261051/report/cat_sub-261051_acq-headmotion1_T1w.xml (file)
add(ok): sub-261051/report/catlog_sub-261051_acq-headmotion1_T1w.txt (file)
add(ok): sub-261051/report/catreport_sub-261051_acq-headmotion1_T1w.pdf (file)
add(ok): sub-261051/label/catROI_sub-261051_acq-standard_T1w.mat (file)
add(ok): sub-261051/mri/it_sub-261051_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-261051/mri/it_sub-261051_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-261051/mri/m0wp1sub-261051_acq-standard_T1w.nii.gz (file)
add(ok): sub-261051/mri/mwp1sub-261051_acq-standard_T1w.nii.gz (file)
add(ok): sub-261051/mri/p0sub-261051_acq-standard_T1w.nii.gz (file)
add(ok): sub-261051/mri/t_sub-261051_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-261051/mri/t_sub-261051_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-261051/mri/wp0sub-261051_acq-standard_T1w.nii.gz (file)
add(ok): sub-261051/report/cat_sub-261051_acq-standard_T1w.mat (file)
add(ok): sub-261051/report/catreport_sub-261051_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:23:48 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:23:48 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149432/ds/sub-261051/sub-261051_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-261051/sub-261051_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 6s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
73s
SPM preprocessing 1 (estimate 2): 50s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 8s
82s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 10s
103s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.09) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
88s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 17s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 65s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
120s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 27s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 13s
ROI estimation of 'anatomy3' atlas 19s
ROI estimation of 'julichbrain' atlas 26s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 48s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 65s
Write results 66s
297s
Quality check 12s
/var/lib/condor/execute/dir_1149432/ds/sub-261051/report/catreport_sub-261051_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 20 minute(s) and 26 second(s).
Image Quality Rating (IQR): 81.46% (B-)
GM volume (GMV): 48.97% (616.09 / 1257.98 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149432/ds/sub-261051/mri
Reports are saved in /var/lib/condor/execute/dir_1149432/ds/sub-261051/report
Labels are saved in /var/lib/condor/execute/dir_1149432/ds/sub-261051/label
------------------------------------------------------------------------
22-Oct-2025 01:44:17 - Done 'CAT12: Segmentation'
22-Oct-2025 01:44:17 - Done
Bye for now...
get(ok): sourcedata/raw/sub-261051/anat/sub-261051_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-261051/label/catROI_sub-261051_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-261051/label/catROI_sub-261051_acq-standard_T1w.mat (file)
unlock(ok): sub-261051/mri/it_sub-261051_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-261051/mri/it_sub-261051_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-261051/mri/it_sub-261051_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-261051/mri/it_sub-261051_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-261051/mri/m0wp1sub-261051_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-261051/mri/m0wp1sub-261051_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-261051/mri/mwp1sub-261051_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-261051/mri/mwp1sub-261051_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-261051/mri/p0sub-261051_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-261051/mri/p0sub-261051_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-261051/mri/t_sub-261051_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-261051/mri/t_sub-261051_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-261051/mri/t_sub-261051_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-261051/mri/t_sub-261051_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-261051/mri/wp0sub-261051_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-261051/mri/wp0sub-261051_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-261051/report/cat_sub-261051_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-261051/report/cat_sub-261051_acq-standard_T1w.mat (file)
unlock(ok): sub-261051/report/catreport_sub-261051_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-261051/report/catreport_sub-261051_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149432/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-261051/label/catROI_sub-261051_acq-headmotion2_T1w.mat (file)
add(ok): sub-261051/label/catROI_sub-261051_acq-headmotion2_T1w.xml (file)
add(ok): sub-261051/mri/it_sub-261051_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-261051/mri/it_sub-261051_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-261051/mri/m0wp1sub-261051_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-261051/mri/mwp1sub-261051_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-261051/mri/p0sub-261051_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-261051/mri/t_sub-261051_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-261051/mri/t_sub-261051_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-261051/mri/wp0sub-261051_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-261051/report/cat_sub-261051_acq-headmotion2_T1w.mat (file)
add(ok): sub-261051/report/cat_sub-261051_acq-headmotion2_T1w.xml (file)
add(ok): sub-261051/report/catlog_sub-261051_acq-headmotion2_T1w.txt (file)
add(ok): sub-261051/report/catreport_sub-261051_acq-headmotion2_T1w.pdf (file)
add(ok): sub-261051/label/catROI_sub-261051_acq-headmotion1_T1w.mat (file)
add(ok): sub-261051/label/catROI_sub-261051_acq-standard_T1w.mat (file)
add(ok): sub-261051/mri/it_sub-261051_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-261051/mri/it_sub-261051_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-261051/mri/it_sub-261051_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-261051/mri/it_sub-261051_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-261051/mri/m0wp1sub-261051_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-261051/mri/m0wp1sub-261051_acq-standard_T1w.nii.gz (file)
add(ok): sub-261051/mri/mwp1sub-261051_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-261051/mri/mwp1sub-261051_acq-standard_T1w.nii.gz (file)
add(ok): sub-261051/mri/p0sub-261051_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-261051/mri/p0sub-261051_acq-standard_T1w.nii.gz (file)
add(ok): sub-261051/mri/t_sub-261051_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-261051/mri/t_sub-261051_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-261051/mri/t_sub-261051_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-261051/mri/t_sub-261051_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-261051/mri/wp0sub-261051_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-261051/mri/wp0sub-261051_acq-standard_T1w.nii.gz (file)
add(ok): sub-261051/report/cat_sub-261051_acq-headmotion1_T1w.mat (file)
add(ok): sub-261051/report/cat_sub-261051_acq-standard_T1w.mat (file)
add(ok): sub-261051/report/catreport_sub-261051_acq-headmotion1_T1w.pdf (file)
add(ok): sub-261051/report/catreport_sub-261051_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-261051/label/catROI_sub-261051_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/label/catROI_sub-261051_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/label/catROI_sub-261051_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/it_sub-261051_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/it_sub-261051_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/it_sub-261051_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/it_sub-261051_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/it_sub-261051_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/it_sub-261051_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/m0wp1sub-261051_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/m0wp1sub-261051_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/m0wp1sub-261051_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/mwp1sub-261051_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/mwp1sub-261051_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/mwp1sub-261051_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/p0sub-261051_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/p0sub-261051_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/p0sub-261051_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/t_sub-261051_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/t_sub-261051_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/t_sub-261051_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/t_sub-261051_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/t_sub-261051_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/t_sub-261051_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/wp0sub-261051_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/wp0sub-261051_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-261051/mri/wp0sub-261051_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-261051/report/cat_sub-261051_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/report/cat_sub-261051_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/report/cat_sub-261051_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-261051/report/catreport_sub-261051_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-261051/report/catreport_sub-261051_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-261051/report/catreport_sub-261051_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001211 seconds
flock: executing git
SUCCESS
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