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ds004173-catqc/logs/10071017.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1149296/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1149296/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149296/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:22 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:22 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149296/ds/sub-645865/sub-645865_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-645865/sub-645865_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 66s
Affine preprocessing (APP)
Initialize 7s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
45s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
78s
SPM preprocessing 1 (estimate 2): 70s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 11s
89s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 11s
103s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.14) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
98s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 14s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 73s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
130s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 49s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 34s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 29s
ROI estimation of 'anatomy3' atlas 43s
ROI estimation of 'julichbrain' atlas 57s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 60s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 72s
Write results 73s
484s
Quality check 14s
/var/lib/condor/execute/dir_1149296/ds/sub-645865/report/catreport_sub-645865_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 56 second(s).
Image Quality Rating (IQR): 87.19% (B+)
GM volume (GMV): 46.04% (715.14 / 1553.31 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149296/ds/sub-645865/mri
Reports are saved in /var/lib/condor/execute/dir_1149296/ds/sub-645865/report
Labels are saved in /var/lib/condor/execute/dir_1149296/ds/sub-645865/label
------------------------------------------------------------------------
22-Oct-2025 01:06:20 - Done 'CAT12: Segmentation'
22-Oct-2025 01:06:20 - Done
Bye for now...
get(ok): sourcedata/raw/sub-645865/anat/sub-645865_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149296/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1149296/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-645865/label/catROI_sub-645865_acq-headmotion1_T1w.mat (file)
add(ok): sub-645865/label/catROI_sub-645865_acq-headmotion1_T1w.xml (file)
add(ok): sub-645865/mri/it_sub-645865_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-645865/mri/it_sub-645865_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-645865/mri/m0wp1sub-645865_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-645865/mri/mwp1sub-645865_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-645865/mri/p0sub-645865_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-645865/mri/t_sub-645865_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-645865/mri/t_sub-645865_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-645865/mri/wp0sub-645865_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-645865/report/cat_sub-645865_acq-headmotion1_T1w.mat (file)
add(ok): sub-645865/report/cat_sub-645865_acq-headmotion1_T1w.xml (file)
add(ok): sub-645865/report/catlog_sub-645865_acq-headmotion1_T1w.txt (file)
add(ok): sub-645865/report/catreport_sub-645865_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:07:03 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:07:04 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149296/ds/sub-645865/sub-645865_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-645865/sub-645865_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 7s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 8s
45s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 77s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 41s
Update probability maps 11s
86s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 7s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
95s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 16s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 90s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
150s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.690.08,0.980.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 16s
ROI estimation of 'anatomy3' atlas 25s
ROI estimation of 'julichbrain' atlas 30s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 13s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 52s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 68s
Write results 69s
326s
Quality check 14s
/var/lib/condor/execute/dir_1149296/ds/sub-645865/report/catreport_sub-645865_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 51 second(s).
Image Quality Rating (IQR): 85.68% (B)
GM volume (GMV): 46.67% (709.80 / 1520.86 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149296/ds/sub-645865/mri
Reports are saved in /var/lib/condor/execute/dir_1149296/ds/sub-645865/report
Labels are saved in /var/lib/condor/execute/dir_1149296/ds/sub-645865/label
------------------------------------------------------------------------
22-Oct-2025 01:32:57 - Done 'CAT12: Segmentation'
22-Oct-2025 01:32:57 - Done
Bye for now...
get(ok): sourcedata/raw/sub-645865/anat/sub-645865_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-645865/label/catROI_sub-645865_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-645865/mri/it_sub-645865_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-645865/mri/it_sub-645865_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-645865/mri/m0wp1sub-645865_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-645865/mri/mwp1sub-645865_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-645865/mri/p0sub-645865_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-645865/mri/t_sub-645865_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-645865/mri/t_sub-645865_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-645865/mri/wp0sub-645865_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-645865/report/cat_sub-645865_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-645865/report/catreport_sub-645865_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149296/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-645865/label/catROI_sub-645865_acq-headmotion2_T1w.mat (file)
add(ok): sub-645865/label/catROI_sub-645865_acq-headmotion2_T1w.xml (file)
add(ok): sub-645865/mri/it_sub-645865_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-645865/mri/it_sub-645865_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-645865/mri/m0wp1sub-645865_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-645865/mri/mwp1sub-645865_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-645865/mri/p0sub-645865_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-645865/mri/t_sub-645865_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-645865/mri/t_sub-645865_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-645865/mri/wp0sub-645865_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-645865/report/cat_sub-645865_acq-headmotion2_T1w.mat (file)
add(ok): sub-645865/report/cat_sub-645865_acq-headmotion2_T1w.xml (file)
add(ok): sub-645865/report/catlog_sub-645865_acq-headmotion2_T1w.txt (file)
add(ok): sub-645865/report/catreport_sub-645865_acq-headmotion2_T1w.pdf (file)
add(ok): sub-645865/label/catROI_sub-645865_acq-headmotion1_T1w.mat (file)
add(ok): sub-645865/mri/it_sub-645865_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-645865/mri/it_sub-645865_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-645865/mri/m0wp1sub-645865_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-645865/mri/mwp1sub-645865_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-645865/mri/p0sub-645865_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-645865/mri/t_sub-645865_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-645865/mri/t_sub-645865_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-645865/mri/wp0sub-645865_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-645865/report/cat_sub-645865_acq-headmotion1_T1w.mat (file)
add(ok): sub-645865/report/catreport_sub-645865_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:33:38 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:33:39 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149296/ds/sub-645865/sub-645865_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-645865/sub-645865_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 68s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 3s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
72s
SPM preprocessing 1 (estimate 2): 59s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 9s
86s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 7s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.14) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
103s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 20s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 74s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
142s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 30s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 15s
ROI estimation of 'anatomy3' atlas 21s
ROI estimation of 'julichbrain' atlas 28s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 64s
Write results 65s
311s
Quality check 13s
/var/lib/condor/execute/dir_1149296/ds/sub-645865/report/catreport_sub-645865_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 46 second(s).
Image Quality Rating (IQR): 88.03% (B+)
GM volume (GMV): 49.15% (786.70 / 1600.54 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149296/ds/sub-645865/mri
Reports are saved in /var/lib/condor/execute/dir_1149296/ds/sub-645865/report
Labels are saved in /var/lib/condor/execute/dir_1149296/ds/sub-645865/label
------------------------------------------------------------------------
22-Oct-2025 01:56:27 - Done 'CAT12: Segmentation'
22-Oct-2025 01:56:27 - Done
Bye for now...
get(ok): sourcedata/raw/sub-645865/anat/sub-645865_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-645865/label/catROI_sub-645865_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-645865/label/catROI_sub-645865_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-645865/mri/it_sub-645865_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-645865/mri/it_sub-645865_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-645865/mri/it_sub-645865_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-645865/mri/it_sub-645865_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-645865/mri/m0wp1sub-645865_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-645865/mri/m0wp1sub-645865_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-645865/mri/mwp1sub-645865_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-645865/mri/mwp1sub-645865_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-645865/mri/p0sub-645865_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-645865/mri/p0sub-645865_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-645865/mri/t_sub-645865_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-645865/mri/t_sub-645865_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-645865/mri/t_sub-645865_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-645865/mri/t_sub-645865_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-645865/mri/wp0sub-645865_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-645865/mri/wp0sub-645865_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-645865/report/cat_sub-645865_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-645865/report/cat_sub-645865_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-645865/report/catreport_sub-645865_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-645865/report/catreport_sub-645865_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149296/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-645865/label/catROI_sub-645865_acq-standard_T1w.mat (file)
add(ok): sub-645865/label/catROI_sub-645865_acq-standard_T1w.xml (file)
add(ok): sub-645865/mri/it_sub-645865_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-645865/mri/it_sub-645865_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-645865/mri/m0wp1sub-645865_acq-standard_T1w.nii.gz (file)
add(ok): sub-645865/mri/mwp1sub-645865_acq-standard_T1w.nii.gz (file)
add(ok): sub-645865/mri/p0sub-645865_acq-standard_T1w.nii.gz (file)
add(ok): sub-645865/mri/t_sub-645865_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-645865/mri/t_sub-645865_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-645865/mri/wp0sub-645865_acq-standard_T1w.nii.gz (file)
add(ok): sub-645865/report/cat_sub-645865_acq-standard_T1w.mat (file)
add(ok): sub-645865/report/cat_sub-645865_acq-standard_T1w.xml (file)
add(ok): sub-645865/report/catlog_sub-645865_acq-standard_T1w.txt (file)
add(ok): sub-645865/report/catreport_sub-645865_acq-standard_T1w.pdf (file)
add(ok): sub-645865/label/catROI_sub-645865_acq-headmotion1_T1w.mat (file)
add(ok): sub-645865/label/catROI_sub-645865_acq-headmotion2_T1w.mat (file)
add(ok): sub-645865/mri/it_sub-645865_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-645865/mri/it_sub-645865_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-645865/mri/it_sub-645865_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-645865/mri/it_sub-645865_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-645865/mri/m0wp1sub-645865_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-645865/mri/m0wp1sub-645865_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-645865/mri/mwp1sub-645865_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-645865/mri/mwp1sub-645865_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-645865/mri/p0sub-645865_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-645865/mri/p0sub-645865_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-645865/mri/t_sub-645865_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-645865/mri/t_sub-645865_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-645865/mri/t_sub-645865_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-645865/mri/t_sub-645865_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-645865/mri/wp0sub-645865_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-645865/mri/wp0sub-645865_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-645865/report/cat_sub-645865_acq-headmotion1_T1w.mat (file)
add(ok): sub-645865/report/cat_sub-645865_acq-headmotion2_T1w.mat (file)
add(ok): sub-645865/report/catreport_sub-645865_acq-headmotion1_T1w.pdf (file)
add(ok): sub-645865/report/catreport_sub-645865_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-645865/label/catROI_sub-645865_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/label/catROI_sub-645865_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/label/catROI_sub-645865_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/it_sub-645865_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/it_sub-645865_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/it_sub-645865_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/it_sub-645865_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/it_sub-645865_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/it_sub-645865_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/m0wp1sub-645865_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/m0wp1sub-645865_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/m0wp1sub-645865_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/mwp1sub-645865_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/mwp1sub-645865_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/mwp1sub-645865_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/p0sub-645865_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/p0sub-645865_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/p0sub-645865_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/t_sub-645865_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/t_sub-645865_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/t_sub-645865_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/t_sub-645865_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/t_sub-645865_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/t_sub-645865_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/wp0sub-645865_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/wp0sub-645865_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-645865/mri/wp0sub-645865_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-645865/report/cat_sub-645865_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/report/cat_sub-645865_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/report/cat_sub-645865_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-645865/report/catreport_sub-645865_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-645865/report/catreport_sub-645865_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-645865/report/catreport_sub-645865_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001473 seconds
flock: executing git
SUCCESS
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