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ds004173-catqc/logs/10071013.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1149228/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1149228/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149228/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:22 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:22 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149228/ds/sub-707576/sub-707576_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-707576/sub-707576_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 68s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
40s
Correct center-of-mass 6s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
69s
SPM preprocessing 1 (estimate 2): 57s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
81s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 5s
95s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.14) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
90s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 16s
Ventricle detection 16s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.11) 52s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
107s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 24s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 21s
ROI estimation of 'anatomy3' atlas 32s
ROI estimation of 'julichbrain' atlas 43s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 72s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 105s
Write results 107s
438s
Quality check 13s
/var/lib/condor/execute/dir_1149228/ds/sub-707576/report/catreport_sub-707576_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 59 second(s).
Image Quality Rating (IQR): 87.26% (B+)
GM volume (GMV): 47.90% (660.00 / 1377.74 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149228/ds/sub-707576/mri
Reports are saved in /var/lib/condor/execute/dir_1149228/ds/sub-707576/report
Labels are saved in /var/lib/condor/execute/dir_1149228/ds/sub-707576/label
------------------------------------------------------------------------
22-Oct-2025 01:03:23 - Done 'CAT12: Segmentation'
22-Oct-2025 01:03:23 - Done
Bye for now...
get(ok): sourcedata/raw/sub-707576/anat/sub-707576_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149228/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1149228/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-707576/label/catROI_sub-707576_acq-headmotion1_T1w.mat (file)
add(ok): sub-707576/label/catROI_sub-707576_acq-headmotion1_T1w.xml (file)
add(ok): sub-707576/mri/it_sub-707576_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-707576/mri/it_sub-707576_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-707576/mri/m0wp1sub-707576_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-707576/mri/mwp1sub-707576_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-707576/mri/p0sub-707576_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-707576/mri/t_sub-707576_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-707576/mri/t_sub-707576_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-707576/mri/wp0sub-707576_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-707576/report/cat_sub-707576_acq-headmotion1_T1w.mat (file)
add(ok): sub-707576/report/cat_sub-707576_acq-headmotion1_T1w.xml (file)
add(ok): sub-707576/report/catlog_sub-707576_acq-headmotion1_T1w.txt (file)
add(ok): sub-707576/report/catreport_sub-707576_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:04:06 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:04:06 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149228/ds/sub-707576/sub-707576_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-707576/sub-707576_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 69s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
40s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
67s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
80s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 10s
100s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
88s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 13s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.09) 51s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
102s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 16s
ROI estimation of 'anatomy3' atlas 26s
ROI estimation of 'julichbrain' atlas 35s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 16s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 31s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 71s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 101s
Write results 103s
396s
Quality check 12s
/var/lib/condor/execute/dir_1149228/ds/sub-707576/report/catreport_sub-707576_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 6 second(s).
Image Quality Rating (IQR): 86.95% (B+)
GM volume (GMV): 47.97% (659.85 / 1375.68 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149228/ds/sub-707576/mri
Reports are saved in /var/lib/condor/execute/dir_1149228/ds/sub-707576/report
Labels are saved in /var/lib/condor/execute/dir_1149228/ds/sub-707576/label
------------------------------------------------------------------------
22-Oct-2025 01:26:14 - Done 'CAT12: Segmentation'
22-Oct-2025 01:26:14 - Done
Bye for now...
get(ok): sourcedata/raw/sub-707576/anat/sub-707576_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-707576/label/catROI_sub-707576_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-707576/mri/it_sub-707576_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-707576/mri/it_sub-707576_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-707576/mri/m0wp1sub-707576_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-707576/mri/mwp1sub-707576_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-707576/mri/p0sub-707576_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-707576/mri/t_sub-707576_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-707576/mri/t_sub-707576_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-707576/mri/wp0sub-707576_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-707576/report/cat_sub-707576_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-707576/report/catreport_sub-707576_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149228/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-707576/label/catROI_sub-707576_acq-headmotion2_T1w.mat (file)
add(ok): sub-707576/label/catROI_sub-707576_acq-headmotion2_T1w.xml (file)
add(ok): sub-707576/mri/it_sub-707576_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-707576/mri/it_sub-707576_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-707576/mri/m0wp1sub-707576_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-707576/mri/mwp1sub-707576_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-707576/mri/p0sub-707576_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-707576/mri/t_sub-707576_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-707576/mri/t_sub-707576_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-707576/mri/wp0sub-707576_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-707576/report/cat_sub-707576_acq-headmotion2_T1w.mat (file)
add(ok): sub-707576/report/cat_sub-707576_acq-headmotion2_T1w.xml (file)
add(ok): sub-707576/report/catlog_sub-707576_acq-headmotion2_T1w.txt (file)
add(ok): sub-707576/report/catreport_sub-707576_acq-headmotion2_T1w.pdf (file)
add(ok): sub-707576/label/catROI_sub-707576_acq-headmotion1_T1w.mat (file)
add(ok): sub-707576/mri/it_sub-707576_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-707576/mri/it_sub-707576_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-707576/mri/m0wp1sub-707576_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-707576/mri/mwp1sub-707576_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-707576/mri/p0sub-707576_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-707576/mri/t_sub-707576_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-707576/mri/t_sub-707576_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-707576/mri/wp0sub-707576_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-707576/report/cat_sub-707576_acq-headmotion1_T1w.mat (file)
add(ok): sub-707576/report/catreport_sub-707576_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:26:55 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:26:55 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149228/ds/sub-707576/sub-707576_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-707576/sub-707576_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 66s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
4s
Use initial fine affine registration. 63s
SPM preprocessing 1 (estimate 2): 52s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
81s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 7s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.11) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
93s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 17s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 60s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
116s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
11s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 16s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 30s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 55s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 79s
Write results 81s
333s
Quality check 12s
/var/lib/condor/execute/dir_1149228/ds/sub-707576/report/catreport_sub-707576_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 22 second(s).
Image Quality Rating (IQR): 88.01% (B+)
GM volume (GMV): 49.12% (677.46 / 1379.07 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149228/ds/sub-707576/mri
Reports are saved in /var/lib/condor/execute/dir_1149228/ds/sub-707576/report
Labels are saved in /var/lib/condor/execute/dir_1149228/ds/sub-707576/label
------------------------------------------------------------------------
22-Oct-2025 01:48:19 - Done 'CAT12: Segmentation'
22-Oct-2025 01:48:19 - Done
Bye for now...
get(ok): sourcedata/raw/sub-707576/anat/sub-707576_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-707576/label/catROI_sub-707576_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-707576/label/catROI_sub-707576_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-707576/mri/it_sub-707576_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-707576/mri/it_sub-707576_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-707576/mri/it_sub-707576_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-707576/mri/it_sub-707576_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-707576/mri/m0wp1sub-707576_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-707576/mri/m0wp1sub-707576_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-707576/mri/mwp1sub-707576_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-707576/mri/mwp1sub-707576_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-707576/mri/p0sub-707576_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-707576/mri/p0sub-707576_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-707576/mri/t_sub-707576_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-707576/mri/t_sub-707576_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-707576/mri/t_sub-707576_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-707576/mri/t_sub-707576_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-707576/mri/wp0sub-707576_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-707576/mri/wp0sub-707576_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-707576/report/cat_sub-707576_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-707576/report/cat_sub-707576_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-707576/report/catreport_sub-707576_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-707576/report/catreport_sub-707576_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149228/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-707576/label/catROI_sub-707576_acq-standard_T1w.mat (file)
add(ok): sub-707576/label/catROI_sub-707576_acq-standard_T1w.xml (file)
add(ok): sub-707576/mri/it_sub-707576_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-707576/mri/it_sub-707576_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-707576/mri/m0wp1sub-707576_acq-standard_T1w.nii.gz (file)
add(ok): sub-707576/mri/mwp1sub-707576_acq-standard_T1w.nii.gz (file)
add(ok): sub-707576/mri/p0sub-707576_acq-standard_T1w.nii.gz (file)
add(ok): sub-707576/mri/t_sub-707576_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-707576/mri/t_sub-707576_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-707576/mri/wp0sub-707576_acq-standard_T1w.nii.gz (file)
add(ok): sub-707576/report/cat_sub-707576_acq-standard_T1w.mat (file)
add(ok): sub-707576/report/cat_sub-707576_acq-standard_T1w.xml (file)
add(ok): sub-707576/report/catlog_sub-707576_acq-standard_T1w.txt (file)
add(ok): sub-707576/report/catreport_sub-707576_acq-standard_T1w.pdf (file)
add(ok): sub-707576/label/catROI_sub-707576_acq-headmotion1_T1w.mat (file)
add(ok): sub-707576/label/catROI_sub-707576_acq-headmotion2_T1w.mat (file)
add(ok): sub-707576/mri/it_sub-707576_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-707576/mri/it_sub-707576_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-707576/mri/it_sub-707576_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-707576/mri/it_sub-707576_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-707576/mri/m0wp1sub-707576_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-707576/mri/m0wp1sub-707576_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-707576/mri/mwp1sub-707576_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-707576/mri/mwp1sub-707576_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-707576/mri/p0sub-707576_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-707576/mri/p0sub-707576_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-707576/mri/t_sub-707576_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-707576/mri/t_sub-707576_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-707576/mri/t_sub-707576_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-707576/mri/t_sub-707576_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-707576/mri/wp0sub-707576_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-707576/mri/wp0sub-707576_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-707576/report/cat_sub-707576_acq-headmotion1_T1w.mat (file)
add(ok): sub-707576/report/cat_sub-707576_acq-headmotion2_T1w.mat (file)
add(ok): sub-707576/report/catreport_sub-707576_acq-headmotion1_T1w.pdf (file)
add(ok): sub-707576/report/catreport_sub-707576_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-707576/label/catROI_sub-707576_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/label/catROI_sub-707576_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/label/catROI_sub-707576_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/it_sub-707576_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/it_sub-707576_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/it_sub-707576_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/it_sub-707576_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/it_sub-707576_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/it_sub-707576_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/m0wp1sub-707576_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/m0wp1sub-707576_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/m0wp1sub-707576_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/mwp1sub-707576_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/mwp1sub-707576_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/mwp1sub-707576_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/p0sub-707576_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/p0sub-707576_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/p0sub-707576_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/t_sub-707576_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/t_sub-707576_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/t_sub-707576_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/t_sub-707576_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/t_sub-707576_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/t_sub-707576_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/wp0sub-707576_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/wp0sub-707576_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-707576/mri/wp0sub-707576_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-707576/report/cat_sub-707576_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/report/cat_sub-707576_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/report/cat_sub-707576_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-707576/report/catreport_sub-707576_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-707576/report/catreport_sub-707576_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-707576/report/catreport_sub-707576_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001200 seconds
flock: executing git
SUCCESS
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