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ds004173-catqc/logs/10071012.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1149210/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1149210/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149210/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:30 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:30 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149210/ds/sub-351288/sub-351288_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-351288/sub-351288_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
43s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
85s
SPM preprocessing 1 (estimate 2): 48s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 8s
89s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 11s
103s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
104s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 20s
Ventricle detection 22s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 83s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
153s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 38s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 27s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 23s
ROI estimation of 'anatomy3' atlas 32s
ROI estimation of 'julichbrain' atlas 43s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 72s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 95s
Write results 97s
449s
Quality check 15s
/var/lib/condor/execute/dir_1149210/ds/sub-351288/report/catreport_sub-351288_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 21 second(s).
Image Quality Rating (IQR): 87.08% (B+)
GM volume (GMV): 48.93% (851.72 / 1740.86 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149210/ds/sub-351288/mri
Reports are saved in /var/lib/condor/execute/dir_1149210/ds/sub-351288/report
Labels are saved in /var/lib/condor/execute/dir_1149210/ds/sub-351288/label
------------------------------------------------------------------------
22-Oct-2025 01:05:53 - Done 'CAT12: Segmentation'
22-Oct-2025 01:05:53 - Done
Bye for now...
get(ok): sourcedata/raw/sub-351288/anat/sub-351288_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149210/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1149210/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-351288/label/catROI_sub-351288_acq-headmotion1_T1w.mat (file)
add(ok): sub-351288/label/catROI_sub-351288_acq-headmotion1_T1w.xml (file)
add(ok): sub-351288/mri/it_sub-351288_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-351288/mri/it_sub-351288_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-351288/mri/m0wp1sub-351288_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-351288/mri/mwp1sub-351288_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-351288/mri/p0sub-351288_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-351288/mri/t_sub-351288_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-351288/mri/t_sub-351288_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-351288/mri/wp0sub-351288_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-351288/report/cat_sub-351288_acq-headmotion1_T1w.mat (file)
add(ok): sub-351288/report/cat_sub-351288_acq-headmotion1_T1w.xml (file)
add(ok): sub-351288/report/catlog_sub-351288_acq-headmotion1_T1w.txt (file)
add(ok): sub-351288/report/catreport_sub-351288_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:06:33 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:06:33 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149210/ds/sub-351288/sub-351288_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-351288/sub-351288_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 68s
Affine preprocessing (APP)
Initialize 7s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
43s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
84s
SPM preprocessing 1 (estimate 2): 48s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 16s
Update Skull-Stripping 44s
Update probability maps 8s
88s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 6s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
102s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 20s
Ventricle detection 23s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 75s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
146s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 36s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 26s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 22s
ROI estimation of 'anatomy3' atlas 31s
ROI estimation of 'julichbrain' atlas 39s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 17s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 32s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 69s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 87s
Write results 88s
422s
Quality check 16s
/var/lib/condor/execute/dir_1149210/ds/sub-351288/report/catreport_sub-351288_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 30 second(s).
Image Quality Rating (IQR): 87.80% (B+)
GM volume (GMV): 49.67% (860.83 / 1733.20 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149210/ds/sub-351288/mri
Reports are saved in /var/lib/condor/execute/dir_1149210/ds/sub-351288/report
Labels are saved in /var/lib/condor/execute/dir_1149210/ds/sub-351288/label
------------------------------------------------------------------------
22-Oct-2025 01:31:05 - Done 'CAT12: Segmentation'
22-Oct-2025 01:31:05 - Done
Bye for now...
get(ok): sourcedata/raw/sub-351288/anat/sub-351288_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-351288/label/catROI_sub-351288_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-351288/mri/it_sub-351288_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-351288/mri/it_sub-351288_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-351288/mri/m0wp1sub-351288_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-351288/mri/mwp1sub-351288_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-351288/mri/p0sub-351288_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-351288/mri/t_sub-351288_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-351288/mri/t_sub-351288_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-351288/mri/wp0sub-351288_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-351288/report/cat_sub-351288_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-351288/report/catreport_sub-351288_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149210/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-351288/label/catROI_sub-351288_acq-standard_T1w.mat (file)
add(ok): sub-351288/label/catROI_sub-351288_acq-standard_T1w.xml (file)
add(ok): sub-351288/mri/it_sub-351288_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-351288/mri/it_sub-351288_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-351288/mri/m0wp1sub-351288_acq-standard_T1w.nii.gz (file)
add(ok): sub-351288/mri/mwp1sub-351288_acq-standard_T1w.nii.gz (file)
add(ok): sub-351288/mri/p0sub-351288_acq-standard_T1w.nii.gz (file)
add(ok): sub-351288/mri/t_sub-351288_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-351288/mri/t_sub-351288_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-351288/mri/wp0sub-351288_acq-standard_T1w.nii.gz (file)
add(ok): sub-351288/report/cat_sub-351288_acq-standard_T1w.mat (file)
add(ok): sub-351288/report/cat_sub-351288_acq-standard_T1w.xml (file)
add(ok): sub-351288/report/catlog_sub-351288_acq-standard_T1w.txt (file)
add(ok): sub-351288/report/catreport_sub-351288_acq-standard_T1w.pdf (file)
add(ok): sub-351288/label/catROI_sub-351288_acq-headmotion1_T1w.mat (file)
add(ok): sub-351288/mri/it_sub-351288_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-351288/mri/it_sub-351288_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-351288/mri/m0wp1sub-351288_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-351288/mri/mwp1sub-351288_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-351288/mri/p0sub-351288_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-351288/mri/t_sub-351288_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-351288/mri/t_sub-351288_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-351288/mri/wp0sub-351288_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-351288/report/cat_sub-351288_acq-headmotion1_T1w.mat (file)
add(ok): sub-351288/report/catreport_sub-351288_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:31:46 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:31:46 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149210/ds/sub-351288/sub-351288_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-351288/sub-351288_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 68s
Affine preprocessing (APP)
Initialize 7s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
42s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
86s
SPM preprocessing 1 (estimate 2): 49s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 16s
Update Skull-Stripping 44s
Update probability maps 8s
88s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 11s
102s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 32s
106s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 23s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 84s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
156s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 35s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 25s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 20s
ROI estimation of 'anatomy3' atlas 29s
ROI estimation of 'julichbrain' atlas 39s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 16s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 31s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 60s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 76s
Write results 78s
393s
Quality check 15s
/var/lib/condor/execute/dir_1149210/ds/sub-351288/report/catreport_sub-351288_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 25 second(s).
Image Quality Rating (IQR): 87.12% (B+)
GM volume (GMV): 48.31% (842.40 / 1743.82 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149210/ds/sub-351288/mri
Reports are saved in /var/lib/condor/execute/dir_1149210/ds/sub-351288/report
Labels are saved in /var/lib/condor/execute/dir_1149210/ds/sub-351288/label
------------------------------------------------------------------------
22-Oct-2025 01:56:14 - Done 'CAT12: Segmentation'
22-Oct-2025 01:56:14 - Done
Bye for now...
get(ok): sourcedata/raw/sub-351288/anat/sub-351288_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-351288/label/catROI_sub-351288_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-351288/label/catROI_sub-351288_acq-standard_T1w.mat (file)
unlock(ok): sub-351288/mri/it_sub-351288_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-351288/mri/it_sub-351288_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-351288/mri/it_sub-351288_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-351288/mri/it_sub-351288_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-351288/mri/m0wp1sub-351288_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-351288/mri/m0wp1sub-351288_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-351288/mri/mwp1sub-351288_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-351288/mri/mwp1sub-351288_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-351288/mri/p0sub-351288_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-351288/mri/p0sub-351288_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-351288/mri/t_sub-351288_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-351288/mri/t_sub-351288_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-351288/mri/t_sub-351288_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-351288/mri/t_sub-351288_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-351288/mri/wp0sub-351288_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-351288/mri/wp0sub-351288_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-351288/report/cat_sub-351288_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-351288/report/cat_sub-351288_acq-standard_T1w.mat (file)
unlock(ok): sub-351288/report/catreport_sub-351288_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-351288/report/catreport_sub-351288_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149210/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-351288/label/catROI_sub-351288_acq-headmotion2_T1w.mat (file)
add(ok): sub-351288/label/catROI_sub-351288_acq-headmotion2_T1w.xml (file)
add(ok): sub-351288/mri/it_sub-351288_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-351288/mri/it_sub-351288_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-351288/mri/m0wp1sub-351288_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-351288/mri/mwp1sub-351288_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-351288/mri/p0sub-351288_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-351288/mri/t_sub-351288_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-351288/mri/t_sub-351288_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-351288/mri/wp0sub-351288_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-351288/report/cat_sub-351288_acq-headmotion2_T1w.mat (file)
add(ok): sub-351288/report/cat_sub-351288_acq-headmotion2_T1w.xml (file)
add(ok): sub-351288/report/catlog_sub-351288_acq-headmotion2_T1w.txt (file)
add(ok): sub-351288/report/catreport_sub-351288_acq-headmotion2_T1w.pdf (file)
add(ok): sub-351288/label/catROI_sub-351288_acq-headmotion1_T1w.mat (file)
add(ok): sub-351288/label/catROI_sub-351288_acq-standard_T1w.mat (file)
add(ok): sub-351288/mri/it_sub-351288_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-351288/mri/it_sub-351288_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-351288/mri/it_sub-351288_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-351288/mri/it_sub-351288_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-351288/mri/m0wp1sub-351288_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-351288/mri/m0wp1sub-351288_acq-standard_T1w.nii.gz (file)
add(ok): sub-351288/mri/mwp1sub-351288_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-351288/mri/mwp1sub-351288_acq-standard_T1w.nii.gz (file)
add(ok): sub-351288/mri/p0sub-351288_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-351288/mri/p0sub-351288_acq-standard_T1w.nii.gz (file)
add(ok): sub-351288/mri/t_sub-351288_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-351288/mri/t_sub-351288_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-351288/mri/t_sub-351288_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-351288/mri/t_sub-351288_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-351288/mri/wp0sub-351288_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-351288/mri/wp0sub-351288_acq-standard_T1w.nii.gz (file)
add(ok): sub-351288/report/cat_sub-351288_acq-headmotion1_T1w.mat (file)
add(ok): sub-351288/report/cat_sub-351288_acq-standard_T1w.mat (file)
add(ok): sub-351288/report/catreport_sub-351288_acq-headmotion1_T1w.pdf (file)
add(ok): sub-351288/report/catreport_sub-351288_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-351288/label/catROI_sub-351288_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/label/catROI_sub-351288_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/label/catROI_sub-351288_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/it_sub-351288_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/it_sub-351288_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/it_sub-351288_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/it_sub-351288_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/it_sub-351288_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/it_sub-351288_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/m0wp1sub-351288_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/m0wp1sub-351288_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/m0wp1sub-351288_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/mwp1sub-351288_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/mwp1sub-351288_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/mwp1sub-351288_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/p0sub-351288_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/p0sub-351288_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/p0sub-351288_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/t_sub-351288_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/t_sub-351288_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/t_sub-351288_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/t_sub-351288_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/t_sub-351288_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/t_sub-351288_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/wp0sub-351288_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/wp0sub-351288_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-351288/mri/wp0sub-351288_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-351288/report/cat_sub-351288_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/report/cat_sub-351288_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/report/cat_sub-351288_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-351288/report/catreport_sub-351288_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-351288/report/catreport_sub-351288_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-351288/report/catreport_sub-351288_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000981 seconds
flock: executing git
SUCCESS
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