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ds004173-catqc/logs/10071011.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1149201/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1149201/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149201/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:28 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:28 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149201/ds/sub-946200/sub-946200_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-946200/sub-946200_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 61s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
43s
Correct center-of-mass 3s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 56s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 16s
Update Skull-Stripping 43s
Update probability maps 8s
88s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 6s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.17) 15s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
99s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 19s
Ventricle detection 17s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 61s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
123s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
6s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 32s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 25s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 22s
ROI estimation of 'anatomy3' atlas 32s
ROI estimation of 'julichbrain' atlas 43s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 72s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 102s
Write results 104s
442s
Quality check 16s
/var/lib/condor/execute/dir_1149201/ds/sub-946200/report/catreport_sub-946200_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 29 second(s).
Image Quality Rating (IQR): 84.87% (B)
GM volume (GMV): 45.00% (765.31 / 1700.88 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149201/ds/sub-946200/mri
Reports are saved in /var/lib/condor/execute/dir_1149201/ds/sub-946200/report
Labels are saved in /var/lib/condor/execute/dir_1149201/ds/sub-946200/label
------------------------------------------------------------------------
22-Oct-2025 01:04:59 - Done 'CAT12: Segmentation'
22-Oct-2025 01:04:59 - Done
Bye for now...
get(ok): sourcedata/raw/sub-946200/anat/sub-946200_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149201/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1149201/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-946200/label/catROI_sub-946200_acq-headmotion2_T1w.mat (file)
add(ok): sub-946200/label/catROI_sub-946200_acq-headmotion2_T1w.xml (file)
add(ok): sub-946200/mri/it_sub-946200_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-946200/mri/it_sub-946200_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-946200/mri/m0wp1sub-946200_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-946200/mri/mwp1sub-946200_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-946200/mri/p0sub-946200_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-946200/mri/t_sub-946200_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-946200/mri/t_sub-946200_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-946200/mri/wp0sub-946200_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-946200/report/cat_sub-946200_acq-headmotion2_T1w.mat (file)
add(ok): sub-946200/report/cat_sub-946200_acq-headmotion2_T1w.xml (file)
add(ok): sub-946200/report/catlog_sub-946200_acq-headmotion2_T1w.txt (file)
add(ok): sub-946200/report/catreport_sub-946200_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:05:47 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:05:47 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149201/ds/sub-946200/sub-946200_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-946200/sub-946200_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 59s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 3s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
84s
SPM preprocessing 1 (estimate 2): 53s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 16s
Update Skull-Stripping 44s
Update probability maps 8s
87s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 6s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.12) 16s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
98s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 20s
Ventricle detection 20s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 73s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
140s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 30s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 21s
ROI estimation of 'anatomy3' atlas 31s
ROI estimation of 'julichbrain' atlas 42s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 17s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 33s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 98s
Write results 100s
422s
Quality check 16s
/var/lib/condor/execute/dir_1149201/ds/sub-946200/report/catreport_sub-946200_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 16 second(s).
Image Quality Rating (IQR): 87.69% (B+)
GM volume (GMV): 46.45% (791.02 / 1702.76 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149201/ds/sub-946200/mri
Reports are saved in /var/lib/condor/execute/dir_1149201/ds/sub-946200/report
Labels are saved in /var/lib/condor/execute/dir_1149201/ds/sub-946200/label
------------------------------------------------------------------------
22-Oct-2025 01:30:06 - Done 'CAT12: Segmentation'
22-Oct-2025 01:30:06 - Done
Bye for now...
get(ok): sourcedata/raw/sub-946200/anat/sub-946200_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-946200/label/catROI_sub-946200_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-946200/mri/it_sub-946200_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-946200/mri/it_sub-946200_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-946200/mri/m0wp1sub-946200_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-946200/mri/mwp1sub-946200_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-946200/mri/p0sub-946200_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-946200/mri/t_sub-946200_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-946200/mri/t_sub-946200_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-946200/mri/wp0sub-946200_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-946200/report/cat_sub-946200_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-946200/report/catreport_sub-946200_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149201/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-946200/label/catROI_sub-946200_acq-standard_T1w.mat (file)
add(ok): sub-946200/label/catROI_sub-946200_acq-standard_T1w.xml (file)
add(ok): sub-946200/mri/it_sub-946200_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-946200/mri/it_sub-946200_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-946200/mri/m0wp1sub-946200_acq-standard_T1w.nii.gz (file)
add(ok): sub-946200/mri/mwp1sub-946200_acq-standard_T1w.nii.gz (file)
add(ok): sub-946200/mri/p0sub-946200_acq-standard_T1w.nii.gz (file)
add(ok): sub-946200/mri/t_sub-946200_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-946200/mri/t_sub-946200_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-946200/mri/wp0sub-946200_acq-standard_T1w.nii.gz (file)
add(ok): sub-946200/report/cat_sub-946200_acq-standard_T1w.mat (file)
add(ok): sub-946200/report/cat_sub-946200_acq-standard_T1w.xml (file)
add(ok): sub-946200/report/catlog_sub-946200_acq-standard_T1w.txt (file)
add(ok): sub-946200/report/catreport_sub-946200_acq-standard_T1w.pdf (file)
add(ok): sub-946200/label/catROI_sub-946200_acq-headmotion2_T1w.mat (file)
add(ok): sub-946200/mri/it_sub-946200_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-946200/mri/it_sub-946200_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-946200/mri/m0wp1sub-946200_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-946200/mri/mwp1sub-946200_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-946200/mri/p0sub-946200_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-946200/mri/t_sub-946200_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-946200/mri/t_sub-946200_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-946200/mri/wp0sub-946200_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-946200/report/cat_sub-946200_acq-headmotion2_T1w.mat (file)
add(ok): sub-946200/report/catreport_sub-946200_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:30:54 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:30:54 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149201/ds/sub-946200/sub-946200_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-946200/sub-946200_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 62s
Affine preprocessing (APP)
Initialize 7s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
43s
Correct center-of-mass 3s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 62s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 9s
87s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 7s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.08) 15s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
100s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 19s
Ventricle detection 17s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 65s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
128s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 18s
ROI estimation of 'anatomy3' atlas 28s
ROI estimation of 'julichbrain' atlas 37s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 32s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 66s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 92s
Write results 94s
390s
Quality check 16s
/var/lib/condor/execute/dir_1149201/ds/sub-946200/report/catreport_sub-946200_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 48 second(s).
Image Quality Rating (IQR): 83.76% (B)
GM volume (GMV): 44.84% (753.45 / 1680.34 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149201/ds/sub-946200/mri
Reports are saved in /var/lib/condor/execute/dir_1149201/ds/sub-946200/report
Labels are saved in /var/lib/condor/execute/dir_1149201/ds/sub-946200/label
------------------------------------------------------------------------
22-Oct-2025 01:54:45 - Done 'CAT12: Segmentation'
22-Oct-2025 01:54:45 - Done
Bye for now...
get(ok): sourcedata/raw/sub-946200/anat/sub-946200_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-946200/label/catROI_sub-946200_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-946200/label/catROI_sub-946200_acq-standard_T1w.mat (file)
unlock(ok): sub-946200/mri/it_sub-946200_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-946200/mri/it_sub-946200_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-946200/mri/it_sub-946200_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-946200/mri/it_sub-946200_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-946200/mri/m0wp1sub-946200_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-946200/mri/m0wp1sub-946200_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-946200/mri/mwp1sub-946200_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-946200/mri/mwp1sub-946200_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-946200/mri/p0sub-946200_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-946200/mri/p0sub-946200_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-946200/mri/t_sub-946200_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-946200/mri/t_sub-946200_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-946200/mri/t_sub-946200_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-946200/mri/t_sub-946200_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-946200/mri/wp0sub-946200_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-946200/mri/wp0sub-946200_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-946200/report/cat_sub-946200_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-946200/report/cat_sub-946200_acq-standard_T1w.mat (file)
unlock(ok): sub-946200/report/catreport_sub-946200_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-946200/report/catreport_sub-946200_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149201/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-946200/label/catROI_sub-946200_acq-headmotion1_T1w.mat (file)
add(ok): sub-946200/label/catROI_sub-946200_acq-headmotion1_T1w.xml (file)
add(ok): sub-946200/mri/it_sub-946200_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-946200/mri/it_sub-946200_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-946200/mri/m0wp1sub-946200_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-946200/mri/mwp1sub-946200_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-946200/mri/p0sub-946200_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-946200/mri/t_sub-946200_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-946200/mri/t_sub-946200_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-946200/mri/wp0sub-946200_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-946200/report/cat_sub-946200_acq-headmotion1_T1w.mat (file)
add(ok): sub-946200/report/cat_sub-946200_acq-headmotion1_T1w.xml (file)
add(ok): sub-946200/report/catlog_sub-946200_acq-headmotion1_T1w.txt (file)
add(ok): sub-946200/report/catreport_sub-946200_acq-headmotion1_T1w.pdf (file)
add(ok): sub-946200/label/catROI_sub-946200_acq-headmotion2_T1w.mat (file)
add(ok): sub-946200/label/catROI_sub-946200_acq-standard_T1w.mat (file)
add(ok): sub-946200/mri/it_sub-946200_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-946200/mri/it_sub-946200_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-946200/mri/it_sub-946200_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-946200/mri/it_sub-946200_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-946200/mri/m0wp1sub-946200_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-946200/mri/m0wp1sub-946200_acq-standard_T1w.nii.gz (file)
add(ok): sub-946200/mri/mwp1sub-946200_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-946200/mri/mwp1sub-946200_acq-standard_T1w.nii.gz (file)
add(ok): sub-946200/mri/p0sub-946200_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-946200/mri/p0sub-946200_acq-standard_T1w.nii.gz (file)
add(ok): sub-946200/mri/t_sub-946200_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-946200/mri/t_sub-946200_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-946200/mri/t_sub-946200_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-946200/mri/t_sub-946200_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-946200/mri/wp0sub-946200_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-946200/mri/wp0sub-946200_acq-standard_T1w.nii.gz (file)
add(ok): sub-946200/report/cat_sub-946200_acq-headmotion2_T1w.mat (file)
add(ok): sub-946200/report/cat_sub-946200_acq-standard_T1w.mat (file)
add(ok): sub-946200/report/catreport_sub-946200_acq-headmotion2_T1w.pdf (file)
add(ok): sub-946200/report/catreport_sub-946200_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-946200/label/catROI_sub-946200_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/label/catROI_sub-946200_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/label/catROI_sub-946200_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/it_sub-946200_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/it_sub-946200_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/it_sub-946200_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/it_sub-946200_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/it_sub-946200_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/it_sub-946200_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/m0wp1sub-946200_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/m0wp1sub-946200_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/m0wp1sub-946200_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/mwp1sub-946200_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/mwp1sub-946200_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/mwp1sub-946200_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/p0sub-946200_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/p0sub-946200_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/p0sub-946200_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/t_sub-946200_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/t_sub-946200_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/t_sub-946200_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/t_sub-946200_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/t_sub-946200_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/t_sub-946200_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/wp0sub-946200_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/wp0sub-946200_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-946200/mri/wp0sub-946200_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-946200/report/cat_sub-946200_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/report/cat_sub-946200_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/report/cat_sub-946200_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-946200/report/catreport_sub-946200_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-946200/report/catreport_sub-946200_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-946200/report/catreport_sub-946200_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000991 seconds
flock: executing git
SUCCESS
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