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ds004173-catqc/logs/10071010.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1149172/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1149172/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149172/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:23 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:23 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149172/ds/sub-652881/sub-652881_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-652881/sub-652881_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
40s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
75s
SPM preprocessing 1 (estimate 2): 61s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 41s
Update probability maps 8s
83s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 5s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
95s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 14s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.11) 66s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
123s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 35s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 26s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 30s
ROI estimation of 'anatomy3' atlas 43s
ROI estimation of 'julichbrain' atlas 57s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 46s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 93s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 114s
Write results 116s
541s
Quality check 14s
/var/lib/condor/execute/dir_1149172/ds/sub-652881/report/catreport_sub-652881_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 32 second(s).
Image Quality Rating (IQR): 87.42% (B+)
GM volume (GMV): 46.35% (710.38 / 1532.48 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149172/ds/sub-652881/mri
Reports are saved in /var/lib/condor/execute/dir_1149172/ds/sub-652881/report
Labels are saved in /var/lib/condor/execute/dir_1149172/ds/sub-652881/label
------------------------------------------------------------------------
22-Oct-2025 01:05:58 - Done 'CAT12: Segmentation'
22-Oct-2025 01:05:58 - Done
Bye for now...
get(ok): sourcedata/raw/sub-652881/anat/sub-652881_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149172/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1149172/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-652881/label/catROI_sub-652881_acq-headmotion1_T1w.mat (file)
add(ok): sub-652881/label/catROI_sub-652881_acq-headmotion1_T1w.xml (file)
add(ok): sub-652881/mri/it_sub-652881_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-652881/mri/it_sub-652881_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-652881/mri/m0wp1sub-652881_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-652881/mri/mwp1sub-652881_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-652881/mri/p0sub-652881_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-652881/mri/t_sub-652881_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-652881/mri/t_sub-652881_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-652881/mri/wp0sub-652881_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-652881/report/cat_sub-652881_acq-headmotion1_T1w.mat (file)
add(ok): sub-652881/report/cat_sub-652881_acq-headmotion1_T1w.xml (file)
add(ok): sub-652881/report/catlog_sub-652881_acq-headmotion1_T1w.txt (file)
add(ok): sub-652881/report/catreport_sub-652881_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:06:38 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:06:38 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149172/ds/sub-652881/sub-652881_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-652881/sub-652881_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 64s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
40s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
73s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 41s
Update probability maps 8s
83s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 5s
96s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
97s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 72s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
133s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 41s
ROI estimation of 'lpba40' atlas 13s
ROI estimation of 'hammers' atlas 33s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 29s
ROI estimation of 'anatomy3' atlas 41s
ROI estimation of 'julichbrain' atlas 52s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 43s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 80s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 79s
Write results 80s
498s
Quality check 14s
/var/lib/condor/execute/dir_1149172/ds/sub-652881/report/catreport_sub-652881_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 4 second(s).
Image Quality Rating (IQR): 87.85% (B+)
GM volume (GMV): 46.66% (716.92 / 1536.53 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149172/ds/sub-652881/mri
Reports are saved in /var/lib/condor/execute/dir_1149172/ds/sub-652881/report
Labels are saved in /var/lib/condor/execute/dir_1149172/ds/sub-652881/label
------------------------------------------------------------------------
22-Oct-2025 01:31:44 - Done 'CAT12: Segmentation'
22-Oct-2025 01:31:44 - Done
Bye for now...
get(ok): sourcedata/raw/sub-652881/anat/sub-652881_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-652881/label/catROI_sub-652881_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-652881/mri/it_sub-652881_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-652881/mri/it_sub-652881_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-652881/mri/m0wp1sub-652881_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-652881/mri/mwp1sub-652881_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-652881/mri/p0sub-652881_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-652881/mri/t_sub-652881_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-652881/mri/t_sub-652881_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-652881/mri/wp0sub-652881_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-652881/report/cat_sub-652881_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-652881/report/catreport_sub-652881_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149172/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-652881/label/catROI_sub-652881_acq-standard_T1w.mat (file)
add(ok): sub-652881/label/catROI_sub-652881_acq-standard_T1w.xml (file)
add(ok): sub-652881/mri/it_sub-652881_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-652881/mri/it_sub-652881_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-652881/mri/m0wp1sub-652881_acq-standard_T1w.nii.gz (file)
add(ok): sub-652881/mri/mwp1sub-652881_acq-standard_T1w.nii.gz (file)
add(ok): sub-652881/mri/p0sub-652881_acq-standard_T1w.nii.gz (file)
add(ok): sub-652881/mri/t_sub-652881_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-652881/mri/t_sub-652881_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-652881/mri/wp0sub-652881_acq-standard_T1w.nii.gz (file)
add(ok): sub-652881/report/cat_sub-652881_acq-standard_T1w.mat (file)
add(ok): sub-652881/report/cat_sub-652881_acq-standard_T1w.xml (file)
add(ok): sub-652881/report/catlog_sub-652881_acq-standard_T1w.txt (file)
add(ok): sub-652881/report/catreport_sub-652881_acq-standard_T1w.pdf (file)
add(ok): sub-652881/label/catROI_sub-652881_acq-headmotion1_T1w.mat (file)
add(ok): sub-652881/mri/it_sub-652881_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-652881/mri/it_sub-652881_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-652881/mri/m0wp1sub-652881_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-652881/mri/mwp1sub-652881_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-652881/mri/p0sub-652881_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-652881/mri/t_sub-652881_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-652881/mri/t_sub-652881_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-652881/mri/wp0sub-652881_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-652881/report/cat_sub-652881_acq-headmotion1_T1w.mat (file)
add(ok): sub-652881/report/catreport_sub-652881_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:32:23 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:32:24 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149172/ds/sub-652881/sub-652881_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-652881/sub-652881_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
40s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
76s
SPM preprocessing 1 (estimate 2): 61s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
84s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 10s
101s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.06) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
93s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 16s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 74s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
133s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
4s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 42s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 29s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 19s
ROI estimation of 'mori' atlas 26s
ROI estimation of 'anatomy3' atlas 38s
ROI estimation of 'julichbrain' atlas 51s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 29s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 62s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 67s
Write results 69s
441s
Quality check 13s
/var/lib/condor/execute/dir_1149172/ds/sub-652881/report/catreport_sub-652881_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 21 second(s).
Image Quality Rating (IQR): 85.95% (B)
GM volume (GMV): 45.26% (686.72 / 1517.14 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149172/ds/sub-652881/mri
Reports are saved in /var/lib/condor/execute/dir_1149172/ds/sub-652881/report
Labels are saved in /var/lib/condor/execute/dir_1149172/ds/sub-652881/label
------------------------------------------------------------------------
22-Oct-2025 01:56:47 - Done 'CAT12: Segmentation'
22-Oct-2025 01:56:47 - Done
Bye for now...
get(ok): sourcedata/raw/sub-652881/anat/sub-652881_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-652881/label/catROI_sub-652881_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-652881/label/catROI_sub-652881_acq-standard_T1w.mat (file)
unlock(ok): sub-652881/mri/it_sub-652881_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-652881/mri/it_sub-652881_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-652881/mri/it_sub-652881_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-652881/mri/it_sub-652881_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-652881/mri/m0wp1sub-652881_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-652881/mri/m0wp1sub-652881_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-652881/mri/mwp1sub-652881_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-652881/mri/mwp1sub-652881_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-652881/mri/p0sub-652881_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-652881/mri/p0sub-652881_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-652881/mri/t_sub-652881_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-652881/mri/t_sub-652881_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-652881/mri/t_sub-652881_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-652881/mri/t_sub-652881_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-652881/mri/wp0sub-652881_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-652881/mri/wp0sub-652881_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-652881/report/cat_sub-652881_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-652881/report/cat_sub-652881_acq-standard_T1w.mat (file)
unlock(ok): sub-652881/report/catreport_sub-652881_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-652881/report/catreport_sub-652881_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149172/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-652881/label/catROI_sub-652881_acq-headmotion2_T1w.mat (file)
add(ok): sub-652881/label/catROI_sub-652881_acq-headmotion2_T1w.xml (file)
add(ok): sub-652881/mri/it_sub-652881_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-652881/mri/it_sub-652881_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-652881/mri/m0wp1sub-652881_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-652881/mri/mwp1sub-652881_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-652881/mri/p0sub-652881_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-652881/mri/t_sub-652881_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-652881/mri/t_sub-652881_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-652881/mri/wp0sub-652881_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-652881/report/cat_sub-652881_acq-headmotion2_T1w.mat (file)
add(ok): sub-652881/report/cat_sub-652881_acq-headmotion2_T1w.xml (file)
add(ok): sub-652881/report/catlog_sub-652881_acq-headmotion2_T1w.txt (file)
add(ok): sub-652881/report/catreport_sub-652881_acq-headmotion2_T1w.pdf (file)
add(ok): sub-652881/label/catROI_sub-652881_acq-headmotion1_T1w.mat (file)
add(ok): sub-652881/label/catROI_sub-652881_acq-standard_T1w.mat (file)
add(ok): sub-652881/mri/it_sub-652881_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-652881/mri/it_sub-652881_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-652881/mri/it_sub-652881_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-652881/mri/it_sub-652881_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-652881/mri/m0wp1sub-652881_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-652881/mri/m0wp1sub-652881_acq-standard_T1w.nii.gz (file)
add(ok): sub-652881/mri/mwp1sub-652881_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-652881/mri/mwp1sub-652881_acq-standard_T1w.nii.gz (file)
add(ok): sub-652881/mri/p0sub-652881_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-652881/mri/p0sub-652881_acq-standard_T1w.nii.gz (file)
add(ok): sub-652881/mri/t_sub-652881_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-652881/mri/t_sub-652881_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-652881/mri/t_sub-652881_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-652881/mri/t_sub-652881_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-652881/mri/wp0sub-652881_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-652881/mri/wp0sub-652881_acq-standard_T1w.nii.gz (file)
add(ok): sub-652881/report/cat_sub-652881_acq-headmotion1_T1w.mat (file)
add(ok): sub-652881/report/cat_sub-652881_acq-standard_T1w.mat (file)
add(ok): sub-652881/report/catreport_sub-652881_acq-headmotion1_T1w.pdf (file)
add(ok): sub-652881/report/catreport_sub-652881_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-652881/label/catROI_sub-652881_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/label/catROI_sub-652881_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/label/catROI_sub-652881_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/it_sub-652881_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/it_sub-652881_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/it_sub-652881_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/it_sub-652881_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/it_sub-652881_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/it_sub-652881_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/m0wp1sub-652881_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/m0wp1sub-652881_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/m0wp1sub-652881_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/mwp1sub-652881_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/mwp1sub-652881_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/mwp1sub-652881_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/p0sub-652881_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/p0sub-652881_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/p0sub-652881_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/t_sub-652881_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/t_sub-652881_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/t_sub-652881_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/t_sub-652881_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/t_sub-652881_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/t_sub-652881_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/wp0sub-652881_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/wp0sub-652881_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-652881/mri/wp0sub-652881_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-652881/report/cat_sub-652881_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/report/cat_sub-652881_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/report/cat_sub-652881_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-652881/report/catreport_sub-652881_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-652881/report/catreport_sub-652881_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-652881/report/catreport_sub-652881_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 30.603832 seconds
flock: executing git
SUCCESS
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