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ds004173-catqc/logs/10071006.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1887237/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887237/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887237/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:43 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:44 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887237/ds/sub-886764/sub-886764_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-886764/sub-886764_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 69s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
46s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
85s
SPM preprocessing 1 (estimate 2): 63s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 44s
Update probability maps 9s
89s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 5s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
97s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 15s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 59s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
117s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 43s
ROI estimation of 'lpba40' atlas 18s
ROI estimation of 'hammers' atlas 47s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 42s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 133s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 176s
Write results 180s
795s
Quality check 16s
/var/lib/condor/execute/dir_1887237/ds/sub-886764/report/catreport_sub-886764_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 48 second(s).
Image Quality Rating (IQR): 87.35% (B+)
GM volume (GMV): 47.96% (672.58 / 1402.33 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887237/ds/sub-886764/mri
Reports are saved in /var/lib/condor/execute/dir_1887237/ds/sub-886764/report
Labels are saved in /var/lib/condor/execute/dir_1887237/ds/sub-886764/label
------------------------------------------------------------------------
22-Oct-2025 01:11:34 - Done 'CAT12: Segmentation'
22-Oct-2025 01:11:34 - Done
Bye for now...
get(ok): sourcedata/raw/sub-886764/anat/sub-886764_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887237/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887237/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-886764/label/catROI_sub-886764_acq-headmotion2_T1w.mat (file)
add(ok): sub-886764/label/catROI_sub-886764_acq-headmotion2_T1w.xml (file)
add(ok): sub-886764/mri/it_sub-886764_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-886764/mri/it_sub-886764_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-886764/mri/m0wp1sub-886764_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-886764/mri/mwp1sub-886764_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-886764/mri/p0sub-886764_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-886764/mri/t_sub-886764_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-886764/mri/t_sub-886764_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-886764/mri/wp0sub-886764_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-886764/report/cat_sub-886764_acq-headmotion2_T1w.mat (file)
add(ok): sub-886764/report/cat_sub-886764_acq-headmotion2_T1w.xml (file)
add(ok): sub-886764/report/catlog_sub-886764_acq-headmotion2_T1w.txt (file)
add(ok): sub-886764/report/catreport_sub-886764_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:12:21 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:12:21 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887237/ds/sub-886764/sub-886764_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-886764/sub-886764_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 72s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
45s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
84s
SPM preprocessing 1 (estimate 2): 65s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 15s
Update Skull-Stripping 44s
Update probability maps 9s
89s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 6s
103s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
102s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 82s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
144s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 15s
ROI estimation of 'neuromorphometrics' atlas 53s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 46s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 17s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 42s
ROI estimation of 'anatomy3' atlas 58s
ROI estimation of 'julichbrain' atlas 74s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 10s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 29s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 58s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 109s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 126s
Write results 128s
703s
Quality check 15s
/var/lib/condor/execute/dir_1887237/ds/sub-886764/report/catreport_sub-886764_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 17 second(s).
Image Quality Rating (IQR): 87.69% (B+)
GM volume (GMV): 49.36% (693.65 / 1405.34 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887237/ds/sub-886764/mri
Reports are saved in /var/lib/condor/execute/dir_1887237/ds/sub-886764/report
Labels are saved in /var/lib/condor/execute/dir_1887237/ds/sub-886764/label
------------------------------------------------------------------------
22-Oct-2025 01:42:41 - Done 'CAT12: Segmentation'
22-Oct-2025 01:42:41 - Done
Bye for now...
get(ok): sourcedata/raw/sub-886764/anat/sub-886764_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-886764/label/catROI_sub-886764_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-886764/mri/it_sub-886764_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-886764/mri/it_sub-886764_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-886764/mri/m0wp1sub-886764_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-886764/mri/mwp1sub-886764_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-886764/mri/p0sub-886764_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-886764/mri/t_sub-886764_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-886764/mri/t_sub-886764_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-886764/mri/wp0sub-886764_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-886764/report/cat_sub-886764_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-886764/report/catreport_sub-886764_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887237/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-886764/label/catROI_sub-886764_acq-standard_T1w.mat (file)
add(ok): sub-886764/label/catROI_sub-886764_acq-standard_T1w.xml (file)
add(ok): sub-886764/mri/it_sub-886764_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-886764/mri/it_sub-886764_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-886764/mri/m0wp1sub-886764_acq-standard_T1w.nii.gz (file)
add(ok): sub-886764/mri/mwp1sub-886764_acq-standard_T1w.nii.gz (file)
add(ok): sub-886764/mri/p0sub-886764_acq-standard_T1w.nii.gz (file)
add(ok): sub-886764/mri/t_sub-886764_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-886764/mri/t_sub-886764_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-886764/mri/wp0sub-886764_acq-standard_T1w.nii.gz (file)
add(ok): sub-886764/report/cat_sub-886764_acq-standard_T1w.mat (file)
add(ok): sub-886764/report/cat_sub-886764_acq-standard_T1w.xml (file)
add(ok): sub-886764/report/catlog_sub-886764_acq-standard_T1w.txt (file)
add(ok): sub-886764/report/catreport_sub-886764_acq-standard_T1w.pdf (file)
add(ok): sub-886764/label/catROI_sub-886764_acq-headmotion2_T1w.mat (file)
add(ok): sub-886764/mri/it_sub-886764_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-886764/mri/it_sub-886764_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-886764/mri/m0wp1sub-886764_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-886764/mri/mwp1sub-886764_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-886764/mri/p0sub-886764_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-886764/mri/t_sub-886764_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-886764/mri/t_sub-886764_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-886764/mri/wp0sub-886764_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-886764/report/cat_sub-886764_acq-headmotion2_T1w.mat (file)
add(ok): sub-886764/report/catreport_sub-886764_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:43:27 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:43:27 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887237/ds/sub-886764/sub-886764_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-886764/sub-886764_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 70s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
45s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 62s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 44s
Update probability maps 9s
88s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 3s
101s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.03) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
100s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 19s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 80s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
142s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 47s
ROI estimation of 'lpba40' atlas 13s
ROI estimation of 'hammers' atlas 36s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 16s
ROI estimation of 'aal3' atlas 24s
ROI estimation of 'mori' atlas 36s
ROI estimation of 'anatomy3' atlas 52s
ROI estimation of 'julichbrain' atlas 66s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 52s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 87s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 97s
Write results 98s
589s
Quality check 13s
/var/lib/condor/execute/dir_1887237/ds/sub-886764/report/catreport_sub-886764_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 50 second(s).
Image Quality Rating (IQR): 87.82% (B+)
GM volume (GMV): 48.71% (685.27 / 1406.86 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887237/ds/sub-886764/mri
Reports are saved in /var/lib/condor/execute/dir_1887237/ds/sub-886764/report
Labels are saved in /var/lib/condor/execute/dir_1887237/ds/sub-886764/label
------------------------------------------------------------------------
22-Oct-2025 02:11:20 - Done 'CAT12: Segmentation'
22-Oct-2025 02:11:20 - Done
Bye for now...
get(ok): sourcedata/raw/sub-886764/anat/sub-886764_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-886764/label/catROI_sub-886764_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-886764/label/catROI_sub-886764_acq-standard_T1w.mat (file)
unlock(ok): sub-886764/mri/it_sub-886764_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-886764/mri/it_sub-886764_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-886764/mri/it_sub-886764_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-886764/mri/it_sub-886764_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-886764/mri/m0wp1sub-886764_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-886764/mri/m0wp1sub-886764_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-886764/mri/mwp1sub-886764_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-886764/mri/mwp1sub-886764_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-886764/mri/p0sub-886764_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-886764/mri/p0sub-886764_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-886764/mri/t_sub-886764_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-886764/mri/t_sub-886764_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-886764/mri/t_sub-886764_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-886764/mri/t_sub-886764_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-886764/mri/wp0sub-886764_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-886764/mri/wp0sub-886764_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-886764/report/cat_sub-886764_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-886764/report/cat_sub-886764_acq-standard_T1w.mat (file)
unlock(ok): sub-886764/report/catreport_sub-886764_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-886764/report/catreport_sub-886764_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887237/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-886764/label/catROI_sub-886764_acq-headmotion1_T1w.mat (file)
add(ok): sub-886764/label/catROI_sub-886764_acq-headmotion1_T1w.xml (file)
add(ok): sub-886764/mri/it_sub-886764_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-886764/mri/it_sub-886764_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-886764/mri/m0wp1sub-886764_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-886764/mri/mwp1sub-886764_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-886764/mri/p0sub-886764_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-886764/mri/t_sub-886764_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-886764/mri/t_sub-886764_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-886764/mri/wp0sub-886764_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-886764/report/cat_sub-886764_acq-headmotion1_T1w.mat (file)
add(ok): sub-886764/report/cat_sub-886764_acq-headmotion1_T1w.xml (file)
add(ok): sub-886764/report/catlog_sub-886764_acq-headmotion1_T1w.txt (file)
add(ok): sub-886764/report/catreport_sub-886764_acq-headmotion1_T1w.pdf (file)
add(ok): sub-886764/label/catROI_sub-886764_acq-headmotion2_T1w.mat (file)
add(ok): sub-886764/label/catROI_sub-886764_acq-standard_T1w.mat (file)
add(ok): sub-886764/mri/it_sub-886764_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-886764/mri/it_sub-886764_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-886764/mri/it_sub-886764_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-886764/mri/it_sub-886764_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-886764/mri/m0wp1sub-886764_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-886764/mri/m0wp1sub-886764_acq-standard_T1w.nii.gz (file)
add(ok): sub-886764/mri/mwp1sub-886764_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-886764/mri/mwp1sub-886764_acq-standard_T1w.nii.gz (file)
add(ok): sub-886764/mri/p0sub-886764_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-886764/mri/p0sub-886764_acq-standard_T1w.nii.gz (file)
add(ok): sub-886764/mri/t_sub-886764_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-886764/mri/t_sub-886764_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-886764/mri/t_sub-886764_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-886764/mri/t_sub-886764_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-886764/mri/wp0sub-886764_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-886764/mri/wp0sub-886764_acq-standard_T1w.nii.gz (file)
add(ok): sub-886764/report/cat_sub-886764_acq-headmotion2_T1w.mat (file)
add(ok): sub-886764/report/cat_sub-886764_acq-standard_T1w.mat (file)
add(ok): sub-886764/report/catreport_sub-886764_acq-headmotion2_T1w.pdf (file)
add(ok): sub-886764/report/catreport_sub-886764_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-886764/label/catROI_sub-886764_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/label/catROI_sub-886764_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/label/catROI_sub-886764_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/it_sub-886764_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/it_sub-886764_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/it_sub-886764_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/it_sub-886764_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/it_sub-886764_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/it_sub-886764_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/m0wp1sub-886764_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/m0wp1sub-886764_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/m0wp1sub-886764_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/mwp1sub-886764_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/mwp1sub-886764_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/mwp1sub-886764_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/p0sub-886764_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/p0sub-886764_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/p0sub-886764_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/t_sub-886764_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/t_sub-886764_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/t_sub-886764_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/t_sub-886764_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/t_sub-886764_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/t_sub-886764_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/wp0sub-886764_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/wp0sub-886764_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-886764/mri/wp0sub-886764_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-886764/report/cat_sub-886764_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/report/cat_sub-886764_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/report/cat_sub-886764_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-886764/report/catreport_sub-886764_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-886764/report/catreport_sub-886764_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-886764/report/catreport_sub-886764_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 61.762786 seconds
flock: executing git
SUCCESS
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