f.hoffstaedter/ds004173-catqc
1
0
Fork 0
Code Pull requests Packages Activity
ds004173-catqc/logs/10071005.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

597 lines
37 KiB (Stored with Git Annex)
Text
Raw Permalink Blame History

This file contains invisible Unicode characters

This file contains invisible Unicode characters that are indistinguishable to humans but may be processed differently by a computer. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

install(ok): /var/lib/condor/execute/dir_1887227/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887227/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887227/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:43 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:43 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887227/ds/sub-678878/sub-678878_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-678878/sub-678878_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 66s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 8s
47s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
90s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 22s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 9s
94s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 9s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
101s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 19s
Ventricle detection 26s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 62s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
134s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
3s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 18s
ROI estimation of 'neuromorphometrics' atlas 67s
ROI estimation of 'lpba40' atlas 19s
ROI estimation of 'hammers' atlas 48s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 30s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 82s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 128s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 132s
Write results 135s
784s
Quality check 15s
/var/lib/condor/execute/dir_1887227/ds/sub-678878/report/catreport_sub-678878_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 23 second(s).
Image Quality Rating (IQR): 85.69% (B)
GM volume (GMV): 50.58% (782.84 / 1547.88 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887227/ds/sub-678878/mri
Reports are saved in /var/lib/condor/execute/dir_1887227/ds/sub-678878/report
Labels are saved in /var/lib/condor/execute/dir_1887227/ds/sub-678878/label
------------------------------------------------------------------------
22-Oct-2025 01:12:08 - Done 'CAT12: Segmentation'
22-Oct-2025 01:12:08 - Done
Bye for now...
get(ok): sourcedata/raw/sub-678878/anat/sub-678878_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887227/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887227/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-678878/label/catROI_sub-678878_acq-headmotion1_T1w.mat (file)
add(ok): sub-678878/label/catROI_sub-678878_acq-headmotion1_T1w.xml (file)
add(ok): sub-678878/mri/it_sub-678878_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-678878/mri/it_sub-678878_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-678878/mri/m0wp1sub-678878_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-678878/mri/mwp1sub-678878_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-678878/mri/p0sub-678878_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-678878/mri/t_sub-678878_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-678878/mri/t_sub-678878_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-678878/mri/wp0sub-678878_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-678878/report/cat_sub-678878_acq-headmotion1_T1w.mat (file)
add(ok): sub-678878/report/cat_sub-678878_acq-headmotion1_T1w.xml (file)
add(ok): sub-678878/report/catlog_sub-678878_acq-headmotion1_T1w.txt (file)
add(ok): sub-678878/report/catreport_sub-678878_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:12:51 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:12:51 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887227/ds/sub-678878/sub-678878_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-678878/sub-678878_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 71s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
45s
Correct center-of-mass 5s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
84s
SPM preprocessing 1 (estimate 2): 62s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 46s
Update probability maps 9s
93s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 7s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.08) 16s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
102s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 25s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 83s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
157s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 36s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 6s
ROI estimation of 'cobra' atlas 18s
ROI estimation of 'neuromorphometrics' atlas 65s
ROI estimation of 'lpba40' atlas 19s
ROI estimation of 'hammers' atlas 46s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 17s
ROI estimation of 'aal3' atlas 27s
ROI estimation of 'mori' atlas 40s
ROI estimation of 'anatomy3' atlas 54s
ROI estimation of 'julichbrain' atlas 71s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 10s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 30s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 54s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 96s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 93s
Write results 96s
665s
Quality check 15s
/var/lib/condor/execute/dir_1887227/ds/sub-678878/report/catreport_sub-678878_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 19 second(s).
Image Quality Rating (IQR): 87.48% (B+)
GM volume (GMV): 51.79% (805.43 / 1555.29 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887227/ds/sub-678878/mri
Reports are saved in /var/lib/condor/execute/dir_1887227/ds/sub-678878/report
Labels are saved in /var/lib/condor/execute/dir_1887227/ds/sub-678878/label
------------------------------------------------------------------------
22-Oct-2025 01:43:12 - Done 'CAT12: Segmentation'
22-Oct-2025 01:43:12 - Done
Bye for now...
get(ok): sourcedata/raw/sub-678878/anat/sub-678878_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-678878/label/catROI_sub-678878_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-678878/mri/it_sub-678878_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-678878/mri/it_sub-678878_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-678878/mri/m0wp1sub-678878_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-678878/mri/mwp1sub-678878_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-678878/mri/p0sub-678878_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-678878/mri/t_sub-678878_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-678878/mri/t_sub-678878_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-678878/mri/wp0sub-678878_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-678878/report/cat_sub-678878_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-678878/report/catreport_sub-678878_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887227/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-678878/label/catROI_sub-678878_acq-standard_T1w.mat (file)
add(ok): sub-678878/label/catROI_sub-678878_acq-standard_T1w.xml (file)
add(ok): sub-678878/mri/it_sub-678878_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-678878/mri/it_sub-678878_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-678878/mri/m0wp1sub-678878_acq-standard_T1w.nii.gz (file)
add(ok): sub-678878/mri/mwp1sub-678878_acq-standard_T1w.nii.gz (file)
add(ok): sub-678878/mri/p0sub-678878_acq-standard_T1w.nii.gz (file)
add(ok): sub-678878/mri/t_sub-678878_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-678878/mri/t_sub-678878_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-678878/mri/wp0sub-678878_acq-standard_T1w.nii.gz (file)
add(ok): sub-678878/report/cat_sub-678878_acq-standard_T1w.mat (file)
add(ok): sub-678878/report/cat_sub-678878_acq-standard_T1w.xml (file)
add(ok): sub-678878/report/catlog_sub-678878_acq-standard_T1w.txt (file)
add(ok): sub-678878/report/catreport_sub-678878_acq-standard_T1w.pdf (file)
add(ok): sub-678878/label/catROI_sub-678878_acq-headmotion1_T1w.mat (file)
add(ok): sub-678878/mri/it_sub-678878_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-678878/mri/it_sub-678878_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-678878/mri/m0wp1sub-678878_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-678878/mri/mwp1sub-678878_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-678878/mri/p0sub-678878_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-678878/mri/t_sub-678878_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-678878/mri/t_sub-678878_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-678878/mri/wp0sub-678878_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-678878/report/cat_sub-678878_acq-headmotion1_T1w.mat (file)
add(ok): sub-678878/report/catreport_sub-678878_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:43:55 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:43:56 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887227/ds/sub-678878/sub-678878_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-678878/sub-678878_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 70s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 6s
Final scaling 7s
47s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
77s
SPM preprocessing 1 (estimate 2): 72s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 12s
94s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 11s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.09) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
103s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 23s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 76s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
147s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
7s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 16s
ROI estimation of 'neuromorphometrics' atlas 57s
ROI estimation of 'lpba40' atlas 17s
ROI estimation of 'hammers' atlas 41s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 24s
ROI estimation of 'mori' atlas 35s
ROI estimation of 'anatomy3' atlas 49s
ROI estimation of 'julichbrain' atlas 63s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 37s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 70s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 75s
Write results 77s
549s
Quality check 13s
/var/lib/condor/execute/dir_1887227/ds/sub-678878/report/catreport_sub-678878_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 55 second(s).
Image Quality Rating (IQR): 85.52% (B)
GM volume (GMV): 49.78% (762.71 / 1532.20 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887227/ds/sub-678878/mri
Reports are saved in /var/lib/condor/execute/dir_1887227/ds/sub-678878/report
Labels are saved in /var/lib/condor/execute/dir_1887227/ds/sub-678878/label
------------------------------------------------------------------------
22-Oct-2025 02:11:53 - Done 'CAT12: Segmentation'
22-Oct-2025 02:11:53 - Done
Bye for now...
get(ok): sourcedata/raw/sub-678878/anat/sub-678878_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-678878/label/catROI_sub-678878_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-678878/label/catROI_sub-678878_acq-standard_T1w.mat (file)
unlock(ok): sub-678878/mri/it_sub-678878_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-678878/mri/it_sub-678878_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-678878/mri/it_sub-678878_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-678878/mri/it_sub-678878_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-678878/mri/m0wp1sub-678878_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-678878/mri/m0wp1sub-678878_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-678878/mri/mwp1sub-678878_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-678878/mri/mwp1sub-678878_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-678878/mri/p0sub-678878_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-678878/mri/p0sub-678878_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-678878/mri/t_sub-678878_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-678878/mri/t_sub-678878_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-678878/mri/t_sub-678878_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-678878/mri/t_sub-678878_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-678878/mri/wp0sub-678878_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-678878/mri/wp0sub-678878_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-678878/report/cat_sub-678878_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-678878/report/cat_sub-678878_acq-standard_T1w.mat (file)
unlock(ok): sub-678878/report/catreport_sub-678878_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-678878/report/catreport_sub-678878_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887227/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-678878/label/catROI_sub-678878_acq-headmotion2_T1w.mat (file)
add(ok): sub-678878/label/catROI_sub-678878_acq-headmotion2_T1w.xml (file)
add(ok): sub-678878/mri/it_sub-678878_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-678878/mri/it_sub-678878_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-678878/mri/m0wp1sub-678878_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-678878/mri/mwp1sub-678878_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-678878/mri/p0sub-678878_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-678878/mri/t_sub-678878_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-678878/mri/t_sub-678878_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-678878/mri/wp0sub-678878_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-678878/report/cat_sub-678878_acq-headmotion2_T1w.mat (file)
add(ok): sub-678878/report/cat_sub-678878_acq-headmotion2_T1w.xml (file)
add(ok): sub-678878/report/catlog_sub-678878_acq-headmotion2_T1w.txt (file)
add(ok): sub-678878/report/catreport_sub-678878_acq-headmotion2_T1w.pdf (file)
add(ok): sub-678878/label/catROI_sub-678878_acq-headmotion1_T1w.mat (file)
add(ok): sub-678878/label/catROI_sub-678878_acq-standard_T1w.mat (file)
add(ok): sub-678878/mri/it_sub-678878_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-678878/mri/it_sub-678878_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-678878/mri/it_sub-678878_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-678878/mri/it_sub-678878_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-678878/mri/m0wp1sub-678878_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-678878/mri/m0wp1sub-678878_acq-standard_T1w.nii.gz (file)
add(ok): sub-678878/mri/mwp1sub-678878_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-678878/mri/mwp1sub-678878_acq-standard_T1w.nii.gz (file)
add(ok): sub-678878/mri/p0sub-678878_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-678878/mri/p0sub-678878_acq-standard_T1w.nii.gz (file)
add(ok): sub-678878/mri/t_sub-678878_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-678878/mri/t_sub-678878_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-678878/mri/t_sub-678878_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-678878/mri/t_sub-678878_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-678878/mri/wp0sub-678878_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-678878/mri/wp0sub-678878_acq-standard_T1w.nii.gz (file)
add(ok): sub-678878/report/cat_sub-678878_acq-headmotion1_T1w.mat (file)
add(ok): sub-678878/report/cat_sub-678878_acq-standard_T1w.mat (file)
add(ok): sub-678878/report/catreport_sub-678878_acq-headmotion1_T1w.pdf (file)
add(ok): sub-678878/report/catreport_sub-678878_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-678878/label/catROI_sub-678878_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/label/catROI_sub-678878_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/label/catROI_sub-678878_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/it_sub-678878_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/it_sub-678878_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/it_sub-678878_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/it_sub-678878_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/it_sub-678878_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/it_sub-678878_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/m0wp1sub-678878_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/m0wp1sub-678878_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/m0wp1sub-678878_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/mwp1sub-678878_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/mwp1sub-678878_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/mwp1sub-678878_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/p0sub-678878_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/p0sub-678878_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/p0sub-678878_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/t_sub-678878_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/t_sub-678878_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/t_sub-678878_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/t_sub-678878_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/t_sub-678878_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/t_sub-678878_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/wp0sub-678878_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/wp0sub-678878_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-678878/mri/wp0sub-678878_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-678878/report/cat_sub-678878_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/report/cat_sub-678878_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/report/cat_sub-678878_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-678878/report/catreport_sub-678878_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-678878/report/catreport_sub-678878_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-678878/report/catreport_sub-678878_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000756 seconds
flock: executing git
SUCCESS
View git blame Copy permalink