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ds004173-catqc/logs/10071000.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1887139/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887139/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887139/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:58 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:58 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887139/ds/sub-219843/sub-219843_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-219843/sub-219843_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 65s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
44s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 64s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 9s
90s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 7s
107s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.04) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
95s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 18s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.09) 65s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
125s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
6s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 52s
ROI estimation of 'lpba40' atlas 16s
ROI estimation of 'hammers' atlas 49s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 19s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 82s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 131s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 147s
Write results 149s
778s
Quality check 14s
/var/lib/condor/execute/dir_1887139/ds/sub-219843/report/catreport_sub-219843_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 24 second(s).
Image Quality Rating (IQR): 87.40% (B+)
GM volume (GMV): 47.71% (666.08 / 1395.97 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887139/ds/sub-219843/mri
Reports are saved in /var/lib/condor/execute/dir_1887139/ds/sub-219843/report
Labels are saved in /var/lib/condor/execute/dir_1887139/ds/sub-219843/label
------------------------------------------------------------------------
22-Oct-2025 01:11:25 - Done 'CAT12: Segmentation'
22-Oct-2025 01:11:25 - Done
Bye for now...
get(ok): sourcedata/raw/sub-219843/anat/sub-219843_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887139/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887139/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-219843/label/catROI_sub-219843_acq-headmotion1_T1w.mat (file)
add(ok): sub-219843/label/catROI_sub-219843_acq-headmotion1_T1w.xml (file)
add(ok): sub-219843/mri/it_sub-219843_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-219843/mri/it_sub-219843_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-219843/mri/m0wp1sub-219843_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-219843/mri/mwp1sub-219843_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-219843/mri/p0sub-219843_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-219843/mri/t_sub-219843_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-219843/mri/t_sub-219843_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-219843/mri/wp0sub-219843_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-219843/report/cat_sub-219843_acq-headmotion1_T1w.mat (file)
add(ok): sub-219843/report/cat_sub-219843_acq-headmotion1_T1w.xml (file)
add(ok): sub-219843/report/catlog_sub-219843_acq-headmotion1_T1w.txt (file)
add(ok): sub-219843/report/catreport_sub-219843_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:12:10 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:12:11 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887139/ds/sub-219843/sub-219843_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-219843/sub-219843_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 68s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
43s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
73s
SPM preprocessing 1 (estimate 2): 59s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 44s
Update probability maps 9s
88s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 10s
107s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.05) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
95s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 14s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.09) 74s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
130s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 39s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 40s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 24s
ROI estimation of 'mori' atlas 34s
ROI estimation of 'anatomy3' atlas 60s
ROI estimation of 'julichbrain' atlas 81s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 33s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 60s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 118s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 121s
Write results 123s
679s
Quality check 14s
/var/lib/condor/execute/dir_1887139/ds/sub-219843/report/catreport_sub-219843_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 51 second(s).
Image Quality Rating (IQR): 87.77% (B+)
GM volume (GMV): 48.00% (671.69 / 1399.29 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887139/ds/sub-219843/mri
Reports are saved in /var/lib/condor/execute/dir_1887139/ds/sub-219843/report
Labels are saved in /var/lib/condor/execute/dir_1887139/ds/sub-219843/label
------------------------------------------------------------------------
22-Oct-2025 01:41:04 - Done 'CAT12: Segmentation'
22-Oct-2025 01:41:05 - Done
Bye for now...
get(ok): sourcedata/raw/sub-219843/anat/sub-219843_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-219843/label/catROI_sub-219843_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-219843/mri/it_sub-219843_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-219843/mri/it_sub-219843_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-219843/mri/m0wp1sub-219843_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-219843/mri/mwp1sub-219843_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-219843/mri/p0sub-219843_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-219843/mri/t_sub-219843_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-219843/mri/t_sub-219843_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-219843/mri/wp0sub-219843_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-219843/report/cat_sub-219843_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-219843/report/catreport_sub-219843_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887139/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-219843/label/catROI_sub-219843_acq-standard_T1w.mat (file)
add(ok): sub-219843/label/catROI_sub-219843_acq-standard_T1w.xml (file)
add(ok): sub-219843/mri/it_sub-219843_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-219843/mri/it_sub-219843_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-219843/mri/m0wp1sub-219843_acq-standard_T1w.nii.gz (file)
add(ok): sub-219843/mri/mwp1sub-219843_acq-standard_T1w.nii.gz (file)
add(ok): sub-219843/mri/p0sub-219843_acq-standard_T1w.nii.gz (file)
add(ok): sub-219843/mri/t_sub-219843_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-219843/mri/t_sub-219843_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-219843/mri/wp0sub-219843_acq-standard_T1w.nii.gz (file)
add(ok): sub-219843/report/cat_sub-219843_acq-standard_T1w.mat (file)
add(ok): sub-219843/report/cat_sub-219843_acq-standard_T1w.xml (file)
add(ok): sub-219843/report/catlog_sub-219843_acq-standard_T1w.txt (file)
add(ok): sub-219843/report/catreport_sub-219843_acq-standard_T1w.pdf (file)
add(ok): sub-219843/label/catROI_sub-219843_acq-headmotion1_T1w.mat (file)
add(ok): sub-219843/mri/it_sub-219843_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-219843/mri/it_sub-219843_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-219843/mri/m0wp1sub-219843_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-219843/mri/mwp1sub-219843_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-219843/mri/p0sub-219843_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-219843/mri/t_sub-219843_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-219843/mri/t_sub-219843_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-219843/mri/wp0sub-219843_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-219843/report/cat_sub-219843_acq-headmotion1_T1w.mat (file)
add(ok): sub-219843/report/catreport_sub-219843_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:41:56 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:41:57 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887139/ds/sub-219843/sub-219843_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-219843/sub-219843_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 69s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
43s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
73s
SPM preprocessing 1 (estimate 2): 68s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 44s
Update probability maps 9s
88s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 11s
108s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.09) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
96s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.07) 72s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
131s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
6s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 39s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 25s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 19s
ROI estimation of 'mori' atlas 29s
ROI estimation of 'anatomy3' atlas 41s
ROI estimation of 'julichbrain' atlas 72s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 10s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 29s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 56s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 99s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 106s
Write results 107s
566s
Quality check 13s
/var/lib/condor/execute/dir_1887139/ds/sub-219843/report/catreport_sub-219843_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 5 second(s).
Image Quality Rating (IQR): 86.90% (B+)
GM volume (GMV): 47.45% (659.74 / 1390.38 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887139/ds/sub-219843/mri
Reports are saved in /var/lib/condor/execute/dir_1887139/ds/sub-219843/report
Labels are saved in /var/lib/condor/execute/dir_1887139/ds/sub-219843/label
------------------------------------------------------------------------
22-Oct-2025 02:09:04 - Done 'CAT12: Segmentation'
22-Oct-2025 02:09:04 - Done
Bye for now...
get(ok): sourcedata/raw/sub-219843/anat/sub-219843_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-219843/label/catROI_sub-219843_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-219843/label/catROI_sub-219843_acq-standard_T1w.mat (file)
unlock(ok): sub-219843/mri/it_sub-219843_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-219843/mri/it_sub-219843_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-219843/mri/it_sub-219843_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-219843/mri/it_sub-219843_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-219843/mri/m0wp1sub-219843_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-219843/mri/m0wp1sub-219843_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-219843/mri/mwp1sub-219843_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-219843/mri/mwp1sub-219843_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-219843/mri/p0sub-219843_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-219843/mri/p0sub-219843_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-219843/mri/t_sub-219843_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-219843/mri/t_sub-219843_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-219843/mri/t_sub-219843_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-219843/mri/t_sub-219843_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-219843/mri/wp0sub-219843_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-219843/mri/wp0sub-219843_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-219843/report/cat_sub-219843_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-219843/report/cat_sub-219843_acq-standard_T1w.mat (file)
unlock(ok): sub-219843/report/catreport_sub-219843_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-219843/report/catreport_sub-219843_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887139/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-219843/label/catROI_sub-219843_acq-headmotion2_T1w.mat (file)
add(ok): sub-219843/label/catROI_sub-219843_acq-headmotion2_T1w.xml (file)
add(ok): sub-219843/mri/it_sub-219843_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-219843/mri/it_sub-219843_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-219843/mri/m0wp1sub-219843_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-219843/mri/mwp1sub-219843_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-219843/mri/p0sub-219843_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-219843/mri/t_sub-219843_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-219843/mri/t_sub-219843_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-219843/mri/wp0sub-219843_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-219843/report/cat_sub-219843_acq-headmotion2_T1w.mat (file)
add(ok): sub-219843/report/cat_sub-219843_acq-headmotion2_T1w.xml (file)
add(ok): sub-219843/report/catlog_sub-219843_acq-headmotion2_T1w.txt (file)
add(ok): sub-219843/report/catreport_sub-219843_acq-headmotion2_T1w.pdf (file)
add(ok): sub-219843/label/catROI_sub-219843_acq-headmotion1_T1w.mat (file)
add(ok): sub-219843/label/catROI_sub-219843_acq-standard_T1w.mat (file)
add(ok): sub-219843/mri/it_sub-219843_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-219843/mri/it_sub-219843_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-219843/mri/it_sub-219843_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-219843/mri/it_sub-219843_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-219843/mri/m0wp1sub-219843_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-219843/mri/m0wp1sub-219843_acq-standard_T1w.nii.gz (file)
add(ok): sub-219843/mri/mwp1sub-219843_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-219843/mri/mwp1sub-219843_acq-standard_T1w.nii.gz (file)
add(ok): sub-219843/mri/p0sub-219843_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-219843/mri/p0sub-219843_acq-standard_T1w.nii.gz (file)
add(ok): sub-219843/mri/t_sub-219843_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-219843/mri/t_sub-219843_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-219843/mri/t_sub-219843_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-219843/mri/t_sub-219843_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-219843/mri/wp0sub-219843_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-219843/mri/wp0sub-219843_acq-standard_T1w.nii.gz (file)
add(ok): sub-219843/report/cat_sub-219843_acq-headmotion1_T1w.mat (file)
add(ok): sub-219843/report/cat_sub-219843_acq-standard_T1w.mat (file)
add(ok): sub-219843/report/catreport_sub-219843_acq-headmotion1_T1w.pdf (file)
add(ok): sub-219843/report/catreport_sub-219843_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-219843/label/catROI_sub-219843_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/label/catROI_sub-219843_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/label/catROI_sub-219843_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/it_sub-219843_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/it_sub-219843_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/it_sub-219843_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/it_sub-219843_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/it_sub-219843_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/it_sub-219843_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/m0wp1sub-219843_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/m0wp1sub-219843_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/m0wp1sub-219843_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/mwp1sub-219843_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/mwp1sub-219843_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/mwp1sub-219843_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/p0sub-219843_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/p0sub-219843_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/p0sub-219843_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/t_sub-219843_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/t_sub-219843_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/t_sub-219843_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/t_sub-219843_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/t_sub-219843_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/t_sub-219843_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/wp0sub-219843_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/wp0sub-219843_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-219843/mri/wp0sub-219843_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-219843/report/cat_sub-219843_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/report/cat_sub-219843_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/report/cat_sub-219843_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-219843/report/catreport_sub-219843_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-219843/report/catreport_sub-219843_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-219843/report/catreport_sub-219843_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000935 seconds
flock: executing git
SUCCESS
View git blame Copy permalink