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ds004173-catqc/logs/10070999.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1887129/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887129/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887129/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:58 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:58 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887129/ds/sub-307592/sub-307592_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-307592/sub-307592_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 54s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
45s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
78s
SPM preprocessing 1 (estimate 2): 65s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 14s
Update Skull-Stripping 42s
Update probability maps 9s
86s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 10s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
88s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 15s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 61s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
114s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 30s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 24s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 27s
ROI estimation of 'anatomy3' atlas 46s
ROI estimation of 'julichbrain' atlas 76s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 134s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 195s
Write results 199s
702s
Quality check 17s
/var/lib/condor/execute/dir_1887129/ds/sub-307592/report/catreport_sub-307592_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 26 second(s).
Image Quality Rating (IQR): 86.20% (B)
GM volume (GMV): 45.65% (574.65 / 1258.92 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887129/ds/sub-307592/mri
Reports are saved in /var/lib/condor/execute/dir_1887129/ds/sub-307592/report
Labels are saved in /var/lib/condor/execute/dir_1887129/ds/sub-307592/label
------------------------------------------------------------------------
22-Oct-2025 01:09:26 - Done 'CAT12: Segmentation'
22-Oct-2025 01:09:26 - Done
Bye for now...
get(ok): sourcedata/raw/sub-307592/anat/sub-307592_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887129/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887129/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-307592/label/catROI_sub-307592_acq-headmotion1_T1w.mat (file)
add(ok): sub-307592/label/catROI_sub-307592_acq-headmotion1_T1w.xml (file)
add(ok): sub-307592/mri/it_sub-307592_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-307592/mri/it_sub-307592_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-307592/mri/m0wp1sub-307592_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-307592/mri/mwp1sub-307592_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-307592/mri/p0sub-307592_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-307592/mri/t_sub-307592_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-307592/mri/t_sub-307592_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-307592/mri/wp0sub-307592_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-307592/report/cat_sub-307592_acq-headmotion1_T1w.mat (file)
add(ok): sub-307592/report/cat_sub-307592_acq-headmotion1_T1w.xml (file)
add(ok): sub-307592/report/catlog_sub-307592_acq-headmotion1_T1w.txt (file)
add(ok): sub-307592/report/catreport_sub-307592_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:10:21 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:10:22 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887129/ds/sub-307592/sub-307592_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-307592/sub-307592_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 57s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
76s
SPM preprocessing 1 (estimate 2): 60s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
86s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 10s
108s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.09) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
91s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 15s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 57s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
111s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
4s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 31s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 24s
ROI estimation of 'anatomy3' atlas 34s
ROI estimation of 'julichbrain' atlas 48s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 46s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 104s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 181s
Write results 185s
572s
Quality check 16s
/var/lib/condor/execute/dir_1887129/ds/sub-307592/report/catreport_sub-307592_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 49 second(s).
Image Quality Rating (IQR): 87.30% (B+)
GM volume (GMV): 47.11% (601.31 / 1276.49 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887129/ds/sub-307592/mri
Reports are saved in /var/lib/condor/execute/dir_1887129/ds/sub-307592/report
Labels are saved in /var/lib/condor/execute/dir_1887129/ds/sub-307592/label
------------------------------------------------------------------------
22-Oct-2025 01:36:14 - Done 'CAT12: Segmentation'
22-Oct-2025 01:36:14 - Done
Bye for now...
get(ok): sourcedata/raw/sub-307592/anat/sub-307592_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-307592/label/catROI_sub-307592_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-307592/mri/it_sub-307592_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-307592/mri/it_sub-307592_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-307592/mri/m0wp1sub-307592_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-307592/mri/mwp1sub-307592_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-307592/mri/p0sub-307592_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-307592/mri/t_sub-307592_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-307592/mri/t_sub-307592_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-307592/mri/wp0sub-307592_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-307592/report/cat_sub-307592_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-307592/report/catreport_sub-307592_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887129/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-307592/label/catROI_sub-307592_acq-standard_T1w.mat (file)
add(ok): sub-307592/label/catROI_sub-307592_acq-standard_T1w.xml (file)
add(ok): sub-307592/mri/it_sub-307592_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-307592/mri/it_sub-307592_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-307592/mri/m0wp1sub-307592_acq-standard_T1w.nii.gz (file)
add(ok): sub-307592/mri/mwp1sub-307592_acq-standard_T1w.nii.gz (file)
add(ok): sub-307592/mri/p0sub-307592_acq-standard_T1w.nii.gz (file)
add(ok): sub-307592/mri/t_sub-307592_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-307592/mri/t_sub-307592_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-307592/mri/wp0sub-307592_acq-standard_T1w.nii.gz (file)
add(ok): sub-307592/report/cat_sub-307592_acq-standard_T1w.mat (file)
add(ok): sub-307592/report/cat_sub-307592_acq-standard_T1w.xml (file)
add(ok): sub-307592/report/catlog_sub-307592_acq-standard_T1w.txt (file)
add(ok): sub-307592/report/catreport_sub-307592_acq-standard_T1w.pdf (file)
add(ok): sub-307592/label/catROI_sub-307592_acq-headmotion1_T1w.mat (file)
add(ok): sub-307592/mri/it_sub-307592_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-307592/mri/it_sub-307592_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-307592/mri/m0wp1sub-307592_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-307592/mri/mwp1sub-307592_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-307592/mri/p0sub-307592_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-307592/mri/t_sub-307592_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-307592/mri/t_sub-307592_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-307592/mri/wp0sub-307592_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-307592/report/cat_sub-307592_acq-headmotion1_T1w.mat (file)
add(ok): sub-307592/report/catreport_sub-307592_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:37:25 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:37:25 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887129/ds/sub-307592/sub-307592_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-307592/sub-307592_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 57s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
46s
Correct center-of-mass 5s
Affine registration 15s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
78s
SPM preprocessing 1 (estimate 2): 73s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 9s
86s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 10s
110s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.20) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
92s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 16s
Ventricle detection 11s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 61s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
110s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 24s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 21s
ROI estimation of 'anatomy3' atlas 29s
ROI estimation of 'julichbrain' atlas 43s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 19s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 38s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 78s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 97s
Write results 99s
445s
Quality check 13s
/var/lib/condor/execute/dir_1887129/ds/sub-307592/report/catreport_sub-307592_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 55 second(s).
Image Quality Rating (IQR): 82.36% (B-)
GM volume (GMV): 45.13% (564.93 / 1251.85 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887129/ds/sub-307592/mri
Reports are saved in /var/lib/condor/execute/dir_1887129/ds/sub-307592/report
Labels are saved in /var/lib/condor/execute/dir_1887129/ds/sub-307592/label
------------------------------------------------------------------------
22-Oct-2025 02:02:24 - Done 'CAT12: Segmentation'
22-Oct-2025 02:02:24 - Done
Bye for now...
get(ok): sourcedata/raw/sub-307592/anat/sub-307592_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-307592/label/catROI_sub-307592_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-307592/label/catROI_sub-307592_acq-standard_T1w.mat (file)
unlock(ok): sub-307592/mri/it_sub-307592_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-307592/mri/it_sub-307592_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-307592/mri/it_sub-307592_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-307592/mri/it_sub-307592_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-307592/mri/m0wp1sub-307592_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-307592/mri/m0wp1sub-307592_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-307592/mri/mwp1sub-307592_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-307592/mri/mwp1sub-307592_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-307592/mri/p0sub-307592_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-307592/mri/p0sub-307592_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-307592/mri/t_sub-307592_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-307592/mri/t_sub-307592_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-307592/mri/t_sub-307592_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-307592/mri/t_sub-307592_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-307592/mri/wp0sub-307592_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-307592/mri/wp0sub-307592_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-307592/report/cat_sub-307592_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-307592/report/cat_sub-307592_acq-standard_T1w.mat (file)
unlock(ok): sub-307592/report/catreport_sub-307592_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-307592/report/catreport_sub-307592_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887129/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-307592/label/catROI_sub-307592_acq-headmotion2_T1w.mat (file)
add(ok): sub-307592/label/catROI_sub-307592_acq-headmotion2_T1w.xml (file)
add(ok): sub-307592/mri/it_sub-307592_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-307592/mri/it_sub-307592_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-307592/mri/m0wp1sub-307592_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-307592/mri/mwp1sub-307592_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-307592/mri/p0sub-307592_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-307592/mri/t_sub-307592_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-307592/mri/t_sub-307592_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-307592/mri/wp0sub-307592_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-307592/report/cat_sub-307592_acq-headmotion2_T1w.mat (file)
add(ok): sub-307592/report/cat_sub-307592_acq-headmotion2_T1w.xml (file)
add(ok): sub-307592/report/catlog_sub-307592_acq-headmotion2_T1w.txt (file)
add(ok): sub-307592/report/catreport_sub-307592_acq-headmotion2_T1w.pdf (file)
add(ok): sub-307592/label/catROI_sub-307592_acq-headmotion1_T1w.mat (file)
add(ok): sub-307592/label/catROI_sub-307592_acq-standard_T1w.mat (file)
add(ok): sub-307592/mri/it_sub-307592_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-307592/mri/it_sub-307592_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-307592/mri/it_sub-307592_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-307592/mri/it_sub-307592_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-307592/mri/m0wp1sub-307592_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-307592/mri/m0wp1sub-307592_acq-standard_T1w.nii.gz (file)
add(ok): sub-307592/mri/mwp1sub-307592_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-307592/mri/mwp1sub-307592_acq-standard_T1w.nii.gz (file)
add(ok): sub-307592/mri/p0sub-307592_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-307592/mri/p0sub-307592_acq-standard_T1w.nii.gz (file)
add(ok): sub-307592/mri/t_sub-307592_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-307592/mri/t_sub-307592_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-307592/mri/t_sub-307592_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-307592/mri/t_sub-307592_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-307592/mri/wp0sub-307592_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-307592/mri/wp0sub-307592_acq-standard_T1w.nii.gz (file)
add(ok): sub-307592/report/cat_sub-307592_acq-headmotion1_T1w.mat (file)
add(ok): sub-307592/report/cat_sub-307592_acq-standard_T1w.mat (file)
add(ok): sub-307592/report/catreport_sub-307592_acq-headmotion1_T1w.pdf (file)
add(ok): sub-307592/report/catreport_sub-307592_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-307592/label/catROI_sub-307592_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/label/catROI_sub-307592_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/label/catROI_sub-307592_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/it_sub-307592_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/it_sub-307592_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/it_sub-307592_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/it_sub-307592_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/it_sub-307592_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/it_sub-307592_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/m0wp1sub-307592_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/m0wp1sub-307592_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/m0wp1sub-307592_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/mwp1sub-307592_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/mwp1sub-307592_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/mwp1sub-307592_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/p0sub-307592_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/p0sub-307592_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/p0sub-307592_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/t_sub-307592_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/t_sub-307592_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/t_sub-307592_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/t_sub-307592_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/t_sub-307592_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/t_sub-307592_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/wp0sub-307592_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/wp0sub-307592_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-307592/mri/wp0sub-307592_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-307592/report/cat_sub-307592_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/report/cat_sub-307592_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/report/cat_sub-307592_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-307592/report/catreport_sub-307592_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-307592/report/catreport_sub-307592_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-307592/report/catreport_sub-307592_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000866 seconds
flock: executing git
SUCCESS
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