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ds004173-catqc/logs/10070998.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1887123/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887123/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887123/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:41 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887123/ds/sub-811563/sub-811563_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-811563/sub-811563_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
42s
Correct center-of-mass 8s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
7s
Use initial fine affine registration. 5s
Use previous fine affine registration. 71s
SPM preprocessing 1 (estimate 2): 54s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 44s
Update probability maps 9s
89s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 11s
110s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.09) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
99s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 19s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 74s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
136s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 36s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 28s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 23s
ROI estimation of 'mori' atlas 33s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 133s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 166s
Write results 170s
727s
Quality check 16s
/var/lib/condor/execute/dir_1887123/ds/sub-811563/report/catreport_sub-811563_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 29 minute(s) and 17 second(s).
Image Quality Rating (IQR): 87.86% (B+)
GM volume (GMV): 45.31% (656.34 / 1448.51 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887123/ds/sub-811563/mri
Reports are saved in /var/lib/condor/execute/dir_1887123/ds/sub-811563/report
Labels are saved in /var/lib/condor/execute/dir_1887123/ds/sub-811563/label
------------------------------------------------------------------------
22-Oct-2025 01:10:01 - Done 'CAT12: Segmentation'
22-Oct-2025 01:10:01 - Done
Bye for now...
get(ok): sourcedata/raw/sub-811563/anat/sub-811563_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887123/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887123/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-811563/label/catROI_sub-811563_acq-standard_T1w.mat (file)
add(ok): sub-811563/label/catROI_sub-811563_acq-standard_T1w.xml (file)
add(ok): sub-811563/mri/it_sub-811563_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-811563/mri/it_sub-811563_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-811563/mri/m0wp1sub-811563_acq-standard_T1w.nii.gz (file)
add(ok): sub-811563/mri/mwp1sub-811563_acq-standard_T1w.nii.gz (file)
add(ok): sub-811563/mri/p0sub-811563_acq-standard_T1w.nii.gz (file)
add(ok): sub-811563/mri/t_sub-811563_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-811563/mri/t_sub-811563_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-811563/mri/wp0sub-811563_acq-standard_T1w.nii.gz (file)
add(ok): sub-811563/report/cat_sub-811563_acq-standard_T1w.mat (file)
add(ok): sub-811563/report/cat_sub-811563_acq-standard_T1w.xml (file)
add(ok): sub-811563/report/catlog_sub-811563_acq-standard_T1w.txt (file)
add(ok): sub-811563/report/catreport_sub-811563_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:10:53 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:10:54 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887123/ds/sub-811563/sub-811563_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-811563/sub-811563_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 62s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 7s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
7s
Use initial fine affine registration. 5s
Use previous fine affine registration. 70s
SPM preprocessing 1 (estimate 2): 62s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 9s
88s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 7s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
97s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 63s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
123s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 40s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 29s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 18s
ROI estimation of 'mori' atlas 25s
ROI estimation of 'anatomy3' atlas 46s
ROI estimation of 'julichbrain' atlas 63s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 56s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 126s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 108s
Write results 110s
595s
Quality check 15s
/var/lib/condor/execute/dir_1887123/ds/sub-811563/report/catreport_sub-811563_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 50 second(s).
Image Quality Rating (IQR): 86.70% (B+)
GM volume (GMV): 43.94% (630.83 / 1435.79 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887123/ds/sub-811563/mri
Reports are saved in /var/lib/condor/execute/dir_1887123/ds/sub-811563/report
Labels are saved in /var/lib/condor/execute/dir_1887123/ds/sub-811563/label
------------------------------------------------------------------------
22-Oct-2025 01:37:46 - Done 'CAT12: Segmentation'
22-Oct-2025 01:37:46 - Done
Bye for now...
get(ok): sourcedata/raw/sub-811563/anat/sub-811563_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-811563/label/catROI_sub-811563_acq-standard_T1w.mat (file)
unlock(ok): sub-811563/mri/it_sub-811563_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-811563/mri/it_sub-811563_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-811563/mri/m0wp1sub-811563_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-811563/mri/mwp1sub-811563_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-811563/mri/p0sub-811563_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-811563/mri/t_sub-811563_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-811563/mri/t_sub-811563_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-811563/mri/wp0sub-811563_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-811563/report/cat_sub-811563_acq-standard_T1w.mat (file)
unlock(ok): sub-811563/report/catreport_sub-811563_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887123/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-811563/label/catROI_sub-811563_acq-headmotion1_T1w.mat (file)
add(ok): sub-811563/label/catROI_sub-811563_acq-headmotion1_T1w.xml (file)
add(ok): sub-811563/mri/it_sub-811563_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-811563/mri/it_sub-811563_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-811563/mri/m0wp1sub-811563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-811563/mri/mwp1sub-811563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-811563/mri/p0sub-811563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-811563/mri/t_sub-811563_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-811563/mri/t_sub-811563_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-811563/mri/wp0sub-811563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-811563/report/cat_sub-811563_acq-headmotion1_T1w.mat (file)
add(ok): sub-811563/report/cat_sub-811563_acq-headmotion1_T1w.xml (file)
add(ok): sub-811563/report/catlog_sub-811563_acq-headmotion1_T1w.txt (file)
add(ok): sub-811563/report/catreport_sub-811563_acq-headmotion1_T1w.pdf (file)
add(ok): sub-811563/label/catROI_sub-811563_acq-standard_T1w.mat (file)
add(ok): sub-811563/mri/it_sub-811563_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-811563/mri/it_sub-811563_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-811563/mri/m0wp1sub-811563_acq-standard_T1w.nii.gz (file)
add(ok): sub-811563/mri/mwp1sub-811563_acq-standard_T1w.nii.gz (file)
add(ok): sub-811563/mri/p0sub-811563_acq-standard_T1w.nii.gz (file)
add(ok): sub-811563/mri/t_sub-811563_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-811563/mri/t_sub-811563_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-811563/mri/wp0sub-811563_acq-standard_T1w.nii.gz (file)
add(ok): sub-811563/report/cat_sub-811563_acq-standard_T1w.mat (file)
add(ok): sub-811563/report/catreport_sub-811563_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:38:52 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:38:53 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887123/ds/sub-811563/sub-811563_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-811563/sub-811563_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 65s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
43s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
7s
Use initial fine affine registration. 74s
SPM preprocessing 1 (estimate 2): 54s
SPM preprocessing 2 (write)
Write Segmentation 22s
Update Segmentation 16s
Update Skull-Stripping 44s
Update probability maps 9s
90s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 11s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
98s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 16s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 71s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
131s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 39s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 26s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 17s
ROI estimation of 'mori' atlas 25s
ROI estimation of 'anatomy3' atlas 35s
ROI estimation of 'julichbrain' atlas 47s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 29s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 73s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 86s
Write results 88s
452s
Quality check 14s
/var/lib/condor/execute/dir_1887123/ds/sub-811563/report/catreport_sub-811563_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 33 second(s).
Image Quality Rating (IQR): 87.47% (B+)
GM volume (GMV): 43.80% (635.07 / 1450.03 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887123/ds/sub-811563/mri
Reports are saved in /var/lib/condor/execute/dir_1887123/ds/sub-811563/report
Labels are saved in /var/lib/condor/execute/dir_1887123/ds/sub-811563/label
------------------------------------------------------------------------
22-Oct-2025 02:03:28 - Done 'CAT12: Segmentation'
22-Oct-2025 02:03:28 - Done
Bye for now...
get(ok): sourcedata/raw/sub-811563/anat/sub-811563_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-811563/label/catROI_sub-811563_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-811563/label/catROI_sub-811563_acq-standard_T1w.mat (file)
unlock(ok): sub-811563/mri/it_sub-811563_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-811563/mri/it_sub-811563_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-811563/mri/it_sub-811563_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-811563/mri/it_sub-811563_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-811563/mri/m0wp1sub-811563_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-811563/mri/m0wp1sub-811563_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-811563/mri/mwp1sub-811563_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-811563/mri/mwp1sub-811563_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-811563/mri/p0sub-811563_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-811563/mri/p0sub-811563_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-811563/mri/t_sub-811563_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-811563/mri/t_sub-811563_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-811563/mri/t_sub-811563_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-811563/mri/t_sub-811563_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-811563/mri/wp0sub-811563_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-811563/mri/wp0sub-811563_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-811563/report/cat_sub-811563_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-811563/report/cat_sub-811563_acq-standard_T1w.mat (file)
unlock(ok): sub-811563/report/catreport_sub-811563_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-811563/report/catreport_sub-811563_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887123/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-811563/label/catROI_sub-811563_acq-headmotion2_T1w.mat (file)
add(ok): sub-811563/label/catROI_sub-811563_acq-headmotion2_T1w.xml (file)
add(ok): sub-811563/mri/it_sub-811563_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-811563/mri/it_sub-811563_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-811563/mri/m0wp1sub-811563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-811563/mri/mwp1sub-811563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-811563/mri/p0sub-811563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-811563/mri/t_sub-811563_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-811563/mri/t_sub-811563_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-811563/mri/wp0sub-811563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-811563/report/cat_sub-811563_acq-headmotion2_T1w.mat (file)
add(ok): sub-811563/report/cat_sub-811563_acq-headmotion2_T1w.xml (file)
add(ok): sub-811563/report/catlog_sub-811563_acq-headmotion2_T1w.txt (file)
add(ok): sub-811563/report/catreport_sub-811563_acq-headmotion2_T1w.pdf (file)
add(ok): sub-811563/label/catROI_sub-811563_acq-headmotion1_T1w.mat (file)
add(ok): sub-811563/label/catROI_sub-811563_acq-standard_T1w.mat (file)
add(ok): sub-811563/mri/it_sub-811563_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-811563/mri/it_sub-811563_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-811563/mri/it_sub-811563_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-811563/mri/it_sub-811563_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-811563/mri/m0wp1sub-811563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-811563/mri/m0wp1sub-811563_acq-standard_T1w.nii.gz (file)
add(ok): sub-811563/mri/mwp1sub-811563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-811563/mri/mwp1sub-811563_acq-standard_T1w.nii.gz (file)
add(ok): sub-811563/mri/p0sub-811563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-811563/mri/p0sub-811563_acq-standard_T1w.nii.gz (file)
add(ok): sub-811563/mri/t_sub-811563_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-811563/mri/t_sub-811563_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-811563/mri/t_sub-811563_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-811563/mri/t_sub-811563_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-811563/mri/wp0sub-811563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-811563/mri/wp0sub-811563_acq-standard_T1w.nii.gz (file)
add(ok): sub-811563/report/cat_sub-811563_acq-headmotion1_T1w.mat (file)
add(ok): sub-811563/report/cat_sub-811563_acq-standard_T1w.mat (file)
add(ok): sub-811563/report/catreport_sub-811563_acq-headmotion1_T1w.pdf (file)
add(ok): sub-811563/report/catreport_sub-811563_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-811563/label/catROI_sub-811563_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/label/catROI_sub-811563_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/label/catROI_sub-811563_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/it_sub-811563_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/it_sub-811563_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/it_sub-811563_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/it_sub-811563_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/it_sub-811563_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/it_sub-811563_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/m0wp1sub-811563_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/m0wp1sub-811563_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/m0wp1sub-811563_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/mwp1sub-811563_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/mwp1sub-811563_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/mwp1sub-811563_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/p0sub-811563_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/p0sub-811563_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/p0sub-811563_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/t_sub-811563_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/t_sub-811563_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/t_sub-811563_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/t_sub-811563_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/t_sub-811563_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/t_sub-811563_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/wp0sub-811563_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/wp0sub-811563_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-811563/mri/wp0sub-811563_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-811563/report/cat_sub-811563_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/report/cat_sub-811563_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/report/cat_sub-811563_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-811563/report/catreport_sub-811563_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-811563/report/catreport_sub-811563_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-811563/report/catreport_sub-811563_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000034 seconds
flock: executing git
SUCCESS
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