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ds004173-catqc/logs/10070997.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1887111/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887111/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887111/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:58 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:58 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887111/ds/sub-108142/sub-108142_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-108142/sub-108142_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 61s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
46s
Correct center-of-mass 4s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
79s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 9s
91s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 3s
103s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.05) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
103s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 20s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 73s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
140s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 51s
ROI estimation of 'lpba40' atlas 17s
ROI estimation of 'hammers' atlas 48s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 44s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 84s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 115s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 91s
Write results 93s
708s
Quality check 14s
/var/lib/condor/execute/dir_1887111/ds/sub-108142/report/catreport_sub-108142_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 1 second(s).
Image Quality Rating (IQR): 84.58% (B)
GM volume (GMV): 47.87% (741.46 / 1548.84 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887111/ds/sub-108142/mri
Reports are saved in /var/lib/condor/execute/dir_1887111/ds/sub-108142/report
Labels are saved in /var/lib/condor/execute/dir_1887111/ds/sub-108142/label
------------------------------------------------------------------------
22-Oct-2025 01:11:02 - Done 'CAT12: Segmentation'
22-Oct-2025 01:11:02 - Done
Bye for now...
get(ok): sourcedata/raw/sub-108142/anat/sub-108142_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887111/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887111/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-108142/label/catROI_sub-108142_acq-headmotion1_T1w.mat (file)
add(ok): sub-108142/label/catROI_sub-108142_acq-headmotion1_T1w.xml (file)
add(ok): sub-108142/mri/it_sub-108142_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-108142/mri/it_sub-108142_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-108142/mri/m0wp1sub-108142_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-108142/mri/mwp1sub-108142_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-108142/mri/p0sub-108142_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-108142/mri/t_sub-108142_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-108142/mri/t_sub-108142_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-108142/mri/wp0sub-108142_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-108142/report/cat_sub-108142_acq-headmotion1_T1w.mat (file)
add(ok): sub-108142/report/cat_sub-108142_acq-headmotion1_T1w.xml (file)
add(ok): sub-108142/report/catlog_sub-108142_acq-headmotion1_T1w.txt (file)
add(ok): sub-108142/report/catreport_sub-108142_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:11:47 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:11:47 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887111/ds/sub-108142/sub-108142_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-108142/sub-108142_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
45s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 68s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 9s
90s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 11s
107s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.05) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
103s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 19s
Ventricle detection 20s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 65s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
131s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
3s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 15s
ROI estimation of 'neuromorphometrics' atlas 53s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 38s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 23s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 60s
ROI estimation of 'julichbrain' atlas 63s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 64s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 86s
Write results 88s
557s
Quality check 15s
/var/lib/condor/execute/dir_1887111/ds/sub-108142/report/catreport_sub-108142_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 22 second(s).
Image Quality Rating (IQR): 82.39% (B-)
GM volume (GMV): 47.71% (740.86 / 1552.92 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887111/ds/sub-108142/mri
Reports are saved in /var/lib/condor/execute/dir_1887111/ds/sub-108142/report
Labels are saved in /var/lib/condor/execute/dir_1887111/ds/sub-108142/label
------------------------------------------------------------------------
22-Oct-2025 01:40:12 - Done 'CAT12: Segmentation'
22-Oct-2025 01:40:12 - Done
Bye for now...
get(ok): sourcedata/raw/sub-108142/anat/sub-108142_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-108142/label/catROI_sub-108142_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-108142/mri/it_sub-108142_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-108142/mri/it_sub-108142_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-108142/mri/m0wp1sub-108142_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-108142/mri/mwp1sub-108142_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-108142/mri/p0sub-108142_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-108142/mri/t_sub-108142_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-108142/mri/t_sub-108142_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-108142/mri/wp0sub-108142_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-108142/report/cat_sub-108142_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-108142/report/catreport_sub-108142_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887111/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-108142/label/catROI_sub-108142_acq-headmotion2_T1w.mat (file)
add(ok): sub-108142/label/catROI_sub-108142_acq-headmotion2_T1w.xml (file)
add(ok): sub-108142/mri/it_sub-108142_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-108142/mri/it_sub-108142_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-108142/mri/m0wp1sub-108142_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-108142/mri/mwp1sub-108142_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-108142/mri/p0sub-108142_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-108142/mri/t_sub-108142_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-108142/mri/t_sub-108142_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-108142/mri/wp0sub-108142_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-108142/report/cat_sub-108142_acq-headmotion2_T1w.mat (file)
add(ok): sub-108142/report/cat_sub-108142_acq-headmotion2_T1w.xml (file)
add(ok): sub-108142/report/catlog_sub-108142_acq-headmotion2_T1w.txt (file)
add(ok): sub-108142/report/catreport_sub-108142_acq-headmotion2_T1w.pdf (file)
add(ok): sub-108142/label/catROI_sub-108142_acq-headmotion1_T1w.mat (file)
add(ok): sub-108142/mri/it_sub-108142_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-108142/mri/it_sub-108142_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-108142/mri/m0wp1sub-108142_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-108142/mri/mwp1sub-108142_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-108142/mri/p0sub-108142_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-108142/mri/t_sub-108142_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-108142/mri/t_sub-108142_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-108142/mri/wp0sub-108142_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-108142/report/cat_sub-108142_acq-headmotion1_T1w.mat (file)
add(ok): sub-108142/report/catreport_sub-108142_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:41:01 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:41:01 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887111/ds/sub-108142/sub-108142_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-108142/sub-108142_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
45s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 9s
92s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 10s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.03) 16s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
103s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 27s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 78s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
153s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 44s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 21s
ROI estimation of 'anatomy3' atlas 27s
ROI estimation of 'julichbrain' atlas 32s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 13s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 54s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 70s
Write results 71s
365s
Quality check 14s
/var/lib/condor/execute/dir_1887111/ds/sub-108142/report/catreport_sub-108142_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 56 second(s).
Image Quality Rating (IQR): 87.70% (B+)
GM volume (GMV): 48.24% (752.38 / 1559.66 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887111/ds/sub-108142/mri
Reports are saved in /var/lib/condor/execute/dir_1887111/ds/sub-108142/report
Labels are saved in /var/lib/condor/execute/dir_1887111/ds/sub-108142/label
------------------------------------------------------------------------
22-Oct-2025 02:07:01 - Done 'CAT12: Segmentation'
22-Oct-2025 02:07:01 - Done
Bye for now...
get(ok): sourcedata/raw/sub-108142/anat/sub-108142_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-108142/label/catROI_sub-108142_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-108142/label/catROI_sub-108142_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-108142/mri/it_sub-108142_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-108142/mri/it_sub-108142_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-108142/mri/it_sub-108142_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-108142/mri/it_sub-108142_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-108142/mri/m0wp1sub-108142_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-108142/mri/m0wp1sub-108142_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-108142/mri/mwp1sub-108142_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-108142/mri/mwp1sub-108142_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-108142/mri/p0sub-108142_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-108142/mri/p0sub-108142_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-108142/mri/t_sub-108142_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-108142/mri/t_sub-108142_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-108142/mri/t_sub-108142_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-108142/mri/t_sub-108142_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-108142/mri/wp0sub-108142_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-108142/mri/wp0sub-108142_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-108142/report/cat_sub-108142_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-108142/report/cat_sub-108142_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-108142/report/catreport_sub-108142_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-108142/report/catreport_sub-108142_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887111/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-108142/label/catROI_sub-108142_acq-standard_T1w.mat (file)
add(ok): sub-108142/label/catROI_sub-108142_acq-standard_T1w.xml (file)
add(ok): sub-108142/mri/it_sub-108142_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-108142/mri/it_sub-108142_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-108142/mri/m0wp1sub-108142_acq-standard_T1w.nii.gz (file)
add(ok): sub-108142/mri/mwp1sub-108142_acq-standard_T1w.nii.gz (file)
add(ok): sub-108142/mri/p0sub-108142_acq-standard_T1w.nii.gz (file)
add(ok): sub-108142/mri/t_sub-108142_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-108142/mri/t_sub-108142_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-108142/mri/wp0sub-108142_acq-standard_T1w.nii.gz (file)
add(ok): sub-108142/report/cat_sub-108142_acq-standard_T1w.mat (file)
add(ok): sub-108142/report/cat_sub-108142_acq-standard_T1w.xml (file)
add(ok): sub-108142/report/catlog_sub-108142_acq-standard_T1w.txt (file)
add(ok): sub-108142/report/catreport_sub-108142_acq-standard_T1w.pdf (file)
add(ok): sub-108142/label/catROI_sub-108142_acq-headmotion1_T1w.mat (file)
add(ok): sub-108142/label/catROI_sub-108142_acq-headmotion2_T1w.mat (file)
add(ok): sub-108142/mri/it_sub-108142_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-108142/mri/it_sub-108142_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-108142/mri/it_sub-108142_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-108142/mri/it_sub-108142_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-108142/mri/m0wp1sub-108142_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-108142/mri/m0wp1sub-108142_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-108142/mri/mwp1sub-108142_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-108142/mri/mwp1sub-108142_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-108142/mri/p0sub-108142_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-108142/mri/p0sub-108142_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-108142/mri/t_sub-108142_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-108142/mri/t_sub-108142_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-108142/mri/t_sub-108142_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-108142/mri/t_sub-108142_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-108142/mri/wp0sub-108142_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-108142/mri/wp0sub-108142_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-108142/report/cat_sub-108142_acq-headmotion1_T1w.mat (file)
add(ok): sub-108142/report/cat_sub-108142_acq-headmotion2_T1w.mat (file)
add(ok): sub-108142/report/catreport_sub-108142_acq-headmotion1_T1w.pdf (file)
add(ok): sub-108142/report/catreport_sub-108142_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-108142/label/catROI_sub-108142_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/label/catROI_sub-108142_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/label/catROI_sub-108142_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/it_sub-108142_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/it_sub-108142_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/it_sub-108142_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/it_sub-108142_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/it_sub-108142_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/it_sub-108142_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/m0wp1sub-108142_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/m0wp1sub-108142_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/m0wp1sub-108142_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/mwp1sub-108142_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/mwp1sub-108142_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/mwp1sub-108142_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/p0sub-108142_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/p0sub-108142_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/p0sub-108142_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/t_sub-108142_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/t_sub-108142_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/t_sub-108142_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/t_sub-108142_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/t_sub-108142_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/t_sub-108142_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/wp0sub-108142_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/wp0sub-108142_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-108142/mri/wp0sub-108142_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-108142/report/cat_sub-108142_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/report/cat_sub-108142_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/report/cat_sub-108142_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-108142/report/catreport_sub-108142_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-108142/report/catreport_sub-108142_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-108142/report/catreport_sub-108142_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000032 seconds
flock: executing git
SUCCESS
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