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ds004173-catqc/logs/10070996.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1887099/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887099/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887099/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887099/ds/sub-107738/sub-107738_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-107738/sub-107738_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 62s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 6s
Final scaling 7s
47s
Correct center-of-mass 4s
Affine registration 15s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
97s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 22s
Update Segmentation 17s
Update Skull-Stripping 47s
Update probability maps 9s
95s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 11s
111s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 17s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
105s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 18s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.09) 92s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
160s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 36s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
7s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 18s
ROI estimation of 'neuromorphometrics' atlas 68s
ROI estimation of 'lpba40' atlas 20s
ROI estimation of 'hammers' atlas 49s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 19s
ROI estimation of 'aal3' atlas 30s
ROI estimation of 'mori' atlas 44s
ROI estimation of 'anatomy3' atlas 63s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 33s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 60s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 77s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 74s
Write results 76s
672s
Quality check 16s
/var/lib/condor/execute/dir_1887099/ds/sub-107738/report/catreport_sub-107738_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 54 second(s).
Image Quality Rating (IQR): 81.18% (B-)
GM volume (GMV): 44.13% (752.16 / 1704.24 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887099/ds/sub-107738/mri
Reports are saved in /var/lib/condor/execute/dir_1887099/ds/sub-107738/report
Labels are saved in /var/lib/condor/execute/dir_1887099/ds/sub-107738/label
------------------------------------------------------------------------
22-Oct-2025 01:11:39 - Done 'CAT12: Segmentation'
22-Oct-2025 01:11:39 - Done
Bye for now...
get(ok): sourcedata/raw/sub-107738/anat/sub-107738_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887099/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887099/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-107738/label/catROI_sub-107738_acq-headmotion2_T1w.mat (file)
add(ok): sub-107738/label/catROI_sub-107738_acq-headmotion2_T1w.xml (file)
add(ok): sub-107738/mri/it_sub-107738_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-107738/mri/it_sub-107738_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-107738/mri/m0wp1sub-107738_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-107738/mri/mwp1sub-107738_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-107738/mri/p0sub-107738_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-107738/mri/t_sub-107738_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-107738/mri/t_sub-107738_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-107738/mri/wp0sub-107738_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-107738/report/cat_sub-107738_acq-headmotion2_T1w.mat (file)
add(ok): sub-107738/report/cat_sub-107738_acq-headmotion2_T1w.xml (file)
add(ok): sub-107738/report/catlog_sub-107738_acq-headmotion2_T1w.txt (file)
add(ok): sub-107738/report/catreport_sub-107738_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:12:23 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:12:23 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887099/ds/sub-107738/sub-107738_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-107738/sub-107738_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 8s
47s
Correct center-of-mass 4s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
88s
SPM preprocessing 1 (estimate 2): 55s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 17s
Update Skull-Stripping 47s
Update probability maps 9s
95s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 23s
Fast Optimized Shooting registration 10s
108s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 17s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 41s
117s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 20s
Blood vessel detection 12s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 91s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 6s
Final corrections 3s
165s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 37s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 6s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
16s
14s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 6s
ROI estimation of 'cobra' atlas 18s
ROI estimation of 'neuromorphometrics' atlas 67s
ROI estimation of 'lpba40' atlas 19s
ROI estimation of 'hammers' atlas 43s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 24s
ROI estimation of 'anatomy3' atlas 30s
ROI estimation of 'julichbrain' atlas 35s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 16s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 28s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 61s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 74s
Write results 76s
469s
Quality check 16s
/var/lib/condor/execute/dir_1887099/ds/sub-107738/report/catreport_sub-107738_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 29 minute(s) and 5 second(s).
Image Quality Rating (IQR): 87.59% (B+)
GM volume (GMV): 45.64% (778.32 / 1705.33 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887099/ds/sub-107738/mri
Reports are saved in /var/lib/condor/execute/dir_1887099/ds/sub-107738/report
Labels are saved in /var/lib/condor/execute/dir_1887099/ds/sub-107738/label
------------------------------------------------------------------------
22-Oct-2025 01:41:30 - Done 'CAT12: Segmentation'
22-Oct-2025 01:41:30 - Done
Bye for now...
get(ok): sourcedata/raw/sub-107738/anat/sub-107738_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-107738/label/catROI_sub-107738_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-107738/mri/it_sub-107738_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-107738/mri/it_sub-107738_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-107738/mri/m0wp1sub-107738_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-107738/mri/mwp1sub-107738_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-107738/mri/p0sub-107738_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-107738/mri/t_sub-107738_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-107738/mri/t_sub-107738_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-107738/mri/wp0sub-107738_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-107738/report/cat_sub-107738_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-107738/report/catreport_sub-107738_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887099/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-107738/label/catROI_sub-107738_acq-standard_T1w.mat (file)
add(ok): sub-107738/label/catROI_sub-107738_acq-standard_T1w.xml (file)
add(ok): sub-107738/mri/it_sub-107738_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-107738/mri/it_sub-107738_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-107738/mri/m0wp1sub-107738_acq-standard_T1w.nii.gz (file)
add(ok): sub-107738/mri/mwp1sub-107738_acq-standard_T1w.nii.gz (file)
add(ok): sub-107738/mri/p0sub-107738_acq-standard_T1w.nii.gz (file)
add(ok): sub-107738/mri/t_sub-107738_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-107738/mri/t_sub-107738_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-107738/mri/wp0sub-107738_acq-standard_T1w.nii.gz (file)
add(ok): sub-107738/report/cat_sub-107738_acq-standard_T1w.mat (file)
add(ok): sub-107738/report/cat_sub-107738_acq-standard_T1w.xml (file)
add(ok): sub-107738/report/catlog_sub-107738_acq-standard_T1w.txt (file)
add(ok): sub-107738/report/catreport_sub-107738_acq-standard_T1w.pdf (file)
add(ok): sub-107738/label/catROI_sub-107738_acq-headmotion2_T1w.mat (file)
add(ok): sub-107738/mri/it_sub-107738_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-107738/mri/it_sub-107738_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-107738/mri/m0wp1sub-107738_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-107738/mri/mwp1sub-107738_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-107738/mri/p0sub-107738_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-107738/mri/t_sub-107738_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-107738/mri/t_sub-107738_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-107738/mri/wp0sub-107738_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-107738/report/cat_sub-107738_acq-headmotion2_T1w.mat (file)
add(ok): sub-107738/report/catreport_sub-107738_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:42:15 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:42:15 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887099/ds/sub-107738/sub-107738_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-107738/sub-107738_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 8s
47s
Correct center-of-mass 4s
Affine registration 21s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
87s
SPM preprocessing 1 (estimate 2): 56s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 17s
Update Skull-Stripping 49s
Update probability maps 9s
97s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 10s
108s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 17s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 32s
105s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 28s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 104s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 4s
185s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 36s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 6s
Level 1 cleanup (brain masking) 5s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
16s
8s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 35s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 16s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 29s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 66s
Write results 68s
330s
Quality check 14s
/var/lib/condor/execute/dir_1887099/ds/sub-107738/report/catreport_sub-107738_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 58 second(s).
Image Quality Rating (IQR): 84.58% (B)
GM volume (GMV): 44.28% (743.81 / 1679.64 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887099/ds/sub-107738/mri
Reports are saved in /var/lib/condor/execute/dir_1887099/ds/sub-107738/report
Labels are saved in /var/lib/condor/execute/dir_1887099/ds/sub-107738/label
------------------------------------------------------------------------
22-Oct-2025 02:08:15 - Done 'CAT12: Segmentation'
22-Oct-2025 02:08:15 - Done
Bye for now...
get(ok): sourcedata/raw/sub-107738/anat/sub-107738_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-107738/label/catROI_sub-107738_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-107738/label/catROI_sub-107738_acq-standard_T1w.mat (file)
unlock(ok): sub-107738/mri/it_sub-107738_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-107738/mri/it_sub-107738_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-107738/mri/it_sub-107738_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-107738/mri/it_sub-107738_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-107738/mri/m0wp1sub-107738_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-107738/mri/m0wp1sub-107738_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-107738/mri/mwp1sub-107738_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-107738/mri/mwp1sub-107738_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-107738/mri/p0sub-107738_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-107738/mri/p0sub-107738_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-107738/mri/t_sub-107738_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-107738/mri/t_sub-107738_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-107738/mri/t_sub-107738_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-107738/mri/t_sub-107738_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-107738/mri/wp0sub-107738_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-107738/mri/wp0sub-107738_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-107738/report/cat_sub-107738_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-107738/report/cat_sub-107738_acq-standard_T1w.mat (file)
unlock(ok): sub-107738/report/catreport_sub-107738_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-107738/report/catreport_sub-107738_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887099/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-107738/label/catROI_sub-107738_acq-headmotion1_T1w.mat (file)
add(ok): sub-107738/label/catROI_sub-107738_acq-headmotion1_T1w.xml (file)
add(ok): sub-107738/mri/it_sub-107738_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-107738/mri/it_sub-107738_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-107738/mri/m0wp1sub-107738_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-107738/mri/mwp1sub-107738_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-107738/mri/p0sub-107738_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-107738/mri/t_sub-107738_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-107738/mri/t_sub-107738_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-107738/mri/wp0sub-107738_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-107738/report/cat_sub-107738_acq-headmotion1_T1w.mat (file)
add(ok): sub-107738/report/cat_sub-107738_acq-headmotion1_T1w.xml (file)
add(ok): sub-107738/report/catlog_sub-107738_acq-headmotion1_T1w.txt (file)
add(ok): sub-107738/report/catreport_sub-107738_acq-headmotion1_T1w.pdf (file)
add(ok): sub-107738/label/catROI_sub-107738_acq-headmotion2_T1w.mat (file)
add(ok): sub-107738/label/catROI_sub-107738_acq-standard_T1w.mat (file)
add(ok): sub-107738/mri/it_sub-107738_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-107738/mri/it_sub-107738_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-107738/mri/it_sub-107738_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-107738/mri/it_sub-107738_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-107738/mri/m0wp1sub-107738_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-107738/mri/m0wp1sub-107738_acq-standard_T1w.nii.gz (file)
add(ok): sub-107738/mri/mwp1sub-107738_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-107738/mri/mwp1sub-107738_acq-standard_T1w.nii.gz (file)
add(ok): sub-107738/mri/p0sub-107738_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-107738/mri/p0sub-107738_acq-standard_T1w.nii.gz (file)
add(ok): sub-107738/mri/t_sub-107738_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-107738/mri/t_sub-107738_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-107738/mri/t_sub-107738_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-107738/mri/t_sub-107738_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-107738/mri/wp0sub-107738_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-107738/mri/wp0sub-107738_acq-standard_T1w.nii.gz (file)
add(ok): sub-107738/report/cat_sub-107738_acq-headmotion2_T1w.mat (file)
add(ok): sub-107738/report/cat_sub-107738_acq-standard_T1w.mat (file)
add(ok): sub-107738/report/catreport_sub-107738_acq-headmotion2_T1w.pdf (file)
add(ok): sub-107738/report/catreport_sub-107738_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-107738/label/catROI_sub-107738_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/label/catROI_sub-107738_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/label/catROI_sub-107738_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/it_sub-107738_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/it_sub-107738_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/it_sub-107738_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/it_sub-107738_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/it_sub-107738_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/it_sub-107738_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/m0wp1sub-107738_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/m0wp1sub-107738_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/m0wp1sub-107738_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/mwp1sub-107738_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/mwp1sub-107738_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/mwp1sub-107738_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/p0sub-107738_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/p0sub-107738_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/p0sub-107738_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/t_sub-107738_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/t_sub-107738_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/t_sub-107738_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/t_sub-107738_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/t_sub-107738_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/t_sub-107738_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/wp0sub-107738_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/wp0sub-107738_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-107738/mri/wp0sub-107738_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-107738/report/cat_sub-107738_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/report/cat_sub-107738_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/report/cat_sub-107738_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-107738/report/catreport_sub-107738_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-107738/report/catreport_sub-107738_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-107738/report/catreport_sub-107738_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000028 seconds
flock: executing git
SUCCESS
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