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ds004173-catqc/logs/10070995.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1887087/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887087/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887087/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887087/ds/sub-258056/sub-258056_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-258056/sub-258056_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 55s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
44s
Correct center-of-mass 5s
Affine registration 12s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
87s
SPM preprocessing 1 (estimate 2): 52s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 9s
91s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 6s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.15) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
99s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 19s
Ventricle detection 19s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 72s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
137s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
5s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 36s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 27s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 17s
ROI estimation of 'mori' atlas 24s
ROI estimation of 'anatomy3' atlas 36s
ROI estimation of 'julichbrain' atlas 60s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 48s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 99s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 148s
Write results 151s
573s
Quality check 17s
/var/lib/condor/execute/dir_1887087/ds/sub-258056/report/catreport_sub-258056_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 19 second(s).
Image Quality Rating (IQR): 88.00% (B+)
GM volume (GMV): 46.06% (696.99 / 1513.27 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887087/ds/sub-258056/mri
Reports are saved in /var/lib/condor/execute/dir_1887087/ds/sub-258056/report
Labels are saved in /var/lib/condor/execute/dir_1887087/ds/sub-258056/label
------------------------------------------------------------------------
22-Oct-2025 01:08:04 - Done 'CAT12: Segmentation'
22-Oct-2025 01:08:05 - Done
Bye for now...
get(ok): sourcedata/raw/sub-258056/anat/sub-258056_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887087/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887087/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-258056/label/catROI_sub-258056_acq-standard_T1w.mat (file)
add(ok): sub-258056/label/catROI_sub-258056_acq-standard_T1w.xml (file)
add(ok): sub-258056/mri/it_sub-258056_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-258056/mri/it_sub-258056_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-258056/mri/m0wp1sub-258056_acq-standard_T1w.nii.gz (file)
add(ok): sub-258056/mri/mwp1sub-258056_acq-standard_T1w.nii.gz (file)
add(ok): sub-258056/mri/p0sub-258056_acq-standard_T1w.nii.gz (file)
add(ok): sub-258056/mri/t_sub-258056_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-258056/mri/t_sub-258056_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-258056/mri/wp0sub-258056_acq-standard_T1w.nii.gz (file)
add(ok): sub-258056/report/cat_sub-258056_acq-standard_T1w.mat (file)
add(ok): sub-258056/report/cat_sub-258056_acq-standard_T1w.xml (file)
add(ok): sub-258056/report/catlog_sub-258056_acq-standard_T1w.txt (file)
add(ok): sub-258056/report/catreport_sub-258056_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:09:04 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:09:04 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887087/ds/sub-258056/sub-258056_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-258056/sub-258056_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
45s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
75s
SPM preprocessing 1 (estimate 2): 59s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 17s
Update Skull-Stripping 46s
Update probability maps 9s
93s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 11s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.15) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
98s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 19s
Ventricle detection 16s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.09) 76s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
138s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 30s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 22s
ROI estimation of 'anatomy3' atlas 33s
ROI estimation of 'julichbrain' atlas 46s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 19s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 37s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 78s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 143s
Write results 146s
489s
Quality check 17s
/var/lib/condor/execute/dir_1887087/ds/sub-258056/report/catreport_sub-258056_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 1 second(s).
Image Quality Rating (IQR): 85.99% (B)
GM volume (GMV): 44.38% (670.42 / 1510.50 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887087/ds/sub-258056/mri
Reports are saved in /var/lib/condor/execute/dir_1887087/ds/sub-258056/report
Labels are saved in /var/lib/condor/execute/dir_1887087/ds/sub-258056/label
------------------------------------------------------------------------
22-Oct-2025 01:35:08 - Done 'CAT12: Segmentation'
22-Oct-2025 01:35:08 - Done
Bye for now...
get(ok): sourcedata/raw/sub-258056/anat/sub-258056_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-258056/label/catROI_sub-258056_acq-standard_T1w.mat (file)
unlock(ok): sub-258056/mri/it_sub-258056_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-258056/mri/it_sub-258056_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-258056/mri/m0wp1sub-258056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-258056/mri/mwp1sub-258056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-258056/mri/p0sub-258056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-258056/mri/t_sub-258056_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-258056/mri/t_sub-258056_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-258056/mri/wp0sub-258056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-258056/report/cat_sub-258056_acq-standard_T1w.mat (file)
unlock(ok): sub-258056/report/catreport_sub-258056_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887087/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-258056/label/catROI_sub-258056_acq-headmotion2_T1w.mat (file)
add(ok): sub-258056/label/catROI_sub-258056_acq-headmotion2_T1w.xml (file)
add(ok): sub-258056/mri/it_sub-258056_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-258056/mri/it_sub-258056_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-258056/mri/m0wp1sub-258056_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-258056/mri/mwp1sub-258056_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-258056/mri/p0sub-258056_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-258056/mri/t_sub-258056_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-258056/mri/t_sub-258056_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-258056/mri/wp0sub-258056_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-258056/report/cat_sub-258056_acq-headmotion2_T1w.mat (file)
add(ok): sub-258056/report/cat_sub-258056_acq-headmotion2_T1w.xml (file)
add(ok): sub-258056/report/catlog_sub-258056_acq-headmotion2_T1w.txt (file)
add(ok): sub-258056/report/catreport_sub-258056_acq-headmotion2_T1w.pdf (file)
add(ok): sub-258056/label/catROI_sub-258056_acq-standard_T1w.mat (file)
add(ok): sub-258056/mri/it_sub-258056_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-258056/mri/it_sub-258056_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-258056/mri/m0wp1sub-258056_acq-standard_T1w.nii.gz (file)
add(ok): sub-258056/mri/mwp1sub-258056_acq-standard_T1w.nii.gz (file)
add(ok): sub-258056/mri/p0sub-258056_acq-standard_T1w.nii.gz (file)
add(ok): sub-258056/mri/t_sub-258056_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-258056/mri/t_sub-258056_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-258056/mri/wp0sub-258056_acq-standard_T1w.nii.gz (file)
add(ok): sub-258056/report/cat_sub-258056_acq-standard_T1w.mat (file)
add(ok): sub-258056/report/catreport_sub-258056_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:36:02 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:36:02 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887087/ds/sub-258056/sub-258056_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-258056/sub-258056_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 56s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
47s
Correct center-of-mass 4s
Affine registration 13s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 54s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 9s
90s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 11s
112s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.13) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
100s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 18s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.09) 79s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
143s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
8s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 31s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 17s
ROI estimation of 'anatomy3' atlas 25s
ROI estimation of 'julichbrain' atlas 38s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 16s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 32s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 72s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 109s
Write results 111s
419s
Quality check 15s
/var/lib/condor/execute/dir_1887087/ds/sub-258056/report/catreport_sub-258056_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 41 second(s).
Image Quality Rating (IQR): 87.53% (B+)
GM volume (GMV): 44.96% (676.71 / 1505.07 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887087/ds/sub-258056/mri
Reports are saved in /var/lib/condor/execute/dir_1887087/ds/sub-258056/report
Labels are saved in /var/lib/condor/execute/dir_1887087/ds/sub-258056/label
------------------------------------------------------------------------
22-Oct-2025 02:00:47 - Done 'CAT12: Segmentation'
22-Oct-2025 02:00:47 - Done
Bye for now...
get(ok): sourcedata/raw/sub-258056/anat/sub-258056_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-258056/label/catROI_sub-258056_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-258056/label/catROI_sub-258056_acq-standard_T1w.mat (file)
unlock(ok): sub-258056/mri/it_sub-258056_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-258056/mri/it_sub-258056_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-258056/mri/it_sub-258056_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-258056/mri/it_sub-258056_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-258056/mri/m0wp1sub-258056_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-258056/mri/m0wp1sub-258056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-258056/mri/mwp1sub-258056_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-258056/mri/mwp1sub-258056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-258056/mri/p0sub-258056_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-258056/mri/p0sub-258056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-258056/mri/t_sub-258056_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-258056/mri/t_sub-258056_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-258056/mri/t_sub-258056_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-258056/mri/t_sub-258056_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-258056/mri/wp0sub-258056_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-258056/mri/wp0sub-258056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-258056/report/cat_sub-258056_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-258056/report/cat_sub-258056_acq-standard_T1w.mat (file)
unlock(ok): sub-258056/report/catreport_sub-258056_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-258056/report/catreport_sub-258056_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887087/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-258056/label/catROI_sub-258056_acq-headmotion1_T1w.mat (file)
add(ok): sub-258056/label/catROI_sub-258056_acq-headmotion1_T1w.xml (file)
add(ok): sub-258056/mri/it_sub-258056_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-258056/mri/it_sub-258056_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-258056/mri/m0wp1sub-258056_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-258056/mri/mwp1sub-258056_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-258056/mri/p0sub-258056_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-258056/mri/t_sub-258056_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-258056/mri/t_sub-258056_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-258056/mri/wp0sub-258056_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-258056/report/cat_sub-258056_acq-headmotion1_T1w.mat (file)
add(ok): sub-258056/report/cat_sub-258056_acq-headmotion1_T1w.xml (file)
add(ok): sub-258056/report/catlog_sub-258056_acq-headmotion1_T1w.txt (file)
add(ok): sub-258056/report/catreport_sub-258056_acq-headmotion1_T1w.pdf (file)
add(ok): sub-258056/label/catROI_sub-258056_acq-headmotion2_T1w.mat (file)
add(ok): sub-258056/label/catROI_sub-258056_acq-standard_T1w.mat (file)
add(ok): sub-258056/mri/it_sub-258056_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-258056/mri/it_sub-258056_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-258056/mri/it_sub-258056_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-258056/mri/it_sub-258056_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-258056/mri/m0wp1sub-258056_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-258056/mri/m0wp1sub-258056_acq-standard_T1w.nii.gz (file)
add(ok): sub-258056/mri/mwp1sub-258056_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-258056/mri/mwp1sub-258056_acq-standard_T1w.nii.gz (file)
add(ok): sub-258056/mri/p0sub-258056_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-258056/mri/p0sub-258056_acq-standard_T1w.nii.gz (file)
add(ok): sub-258056/mri/t_sub-258056_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-258056/mri/t_sub-258056_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-258056/mri/t_sub-258056_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-258056/mri/t_sub-258056_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-258056/mri/wp0sub-258056_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-258056/mri/wp0sub-258056_acq-standard_T1w.nii.gz (file)
add(ok): sub-258056/report/cat_sub-258056_acq-headmotion2_T1w.mat (file)
add(ok): sub-258056/report/cat_sub-258056_acq-standard_T1w.mat (file)
add(ok): sub-258056/report/catreport_sub-258056_acq-headmotion2_T1w.pdf (file)
add(ok): sub-258056/report/catreport_sub-258056_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-258056/label/catROI_sub-258056_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/label/catROI_sub-258056_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/label/catROI_sub-258056_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/it_sub-258056_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/it_sub-258056_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/it_sub-258056_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/it_sub-258056_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/it_sub-258056_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/it_sub-258056_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/m0wp1sub-258056_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/m0wp1sub-258056_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/m0wp1sub-258056_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/mwp1sub-258056_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/mwp1sub-258056_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/mwp1sub-258056_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/p0sub-258056_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/p0sub-258056_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/p0sub-258056_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/t_sub-258056_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/t_sub-258056_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/t_sub-258056_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/t_sub-258056_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/t_sub-258056_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/t_sub-258056_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/wp0sub-258056_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/wp0sub-258056_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-258056/mri/wp0sub-258056_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-258056/report/cat_sub-258056_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/report/cat_sub-258056_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/report/cat_sub-258056_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-258056/report/catreport_sub-258056_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-258056/report/catreport_sub-258056_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-258056/report/catreport_sub-258056_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001254 seconds
flock: executing git
SUCCESS
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