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ds004173-catqc/logs/10070994.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1887079/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887079/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887079/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887079/ds/sub-754006/sub-754006_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-754006/sub-754006_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 73s
Affine preprocessing (APP)
Initialize 8s
Estimate background 9s
Initial correction 8s
Refine background 4s
Final correction 7s
Final scaling 10s
52s
Correct center-of-mass 5s
Affine registration 12s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
99s
SPM preprocessing 1 (estimate 2): 70s
SPM preprocessing 2 (write)
Write Segmentation 22s
Update Segmentation 17s
Update Skull-Stripping 48s
Update probability maps 9s
96s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 22s
Fast Optimized Shooting registration 11s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.08) 17s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 33s
109s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 24s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.20) 83s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 6s
Final corrections 3s
158s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 38s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 6s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
7s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 52s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 36s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 22s
ROI estimation of 'mori' atlas 32s
ROI estimation of 'anatomy3' atlas 46s
ROI estimation of 'julichbrain' atlas 61s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 26s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 50s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 81s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 89s
Write results 90s
563s
Quality check 16s
/var/lib/condor/execute/dir_1887079/ds/sub-754006/report/catreport_sub-754006_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 29 minute(s) and 26 second(s).
Image Quality Rating (IQR): 86.54% (B)
GM volume (GMV): 41.88% (741.34 / 1770.35 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887079/ds/sub-754006/mri
Reports are saved in /var/lib/condor/execute/dir_1887079/ds/sub-754006/report
Labels are saved in /var/lib/condor/execute/dir_1887079/ds/sub-754006/label
------------------------------------------------------------------------
22-Oct-2025 01:10:11 - Done 'CAT12: Segmentation'
22-Oct-2025 01:10:11 - Done
Bye for now...
get(ok): sourcedata/raw/sub-754006/anat/sub-754006_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887079/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887079/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-754006/label/catROI_sub-754006_acq-headmotion1_T1w.mat (file)
add(ok): sub-754006/label/catROI_sub-754006_acq-headmotion1_T1w.xml (file)
add(ok): sub-754006/mri/it_sub-754006_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-754006/mri/it_sub-754006_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-754006/mri/m0wp1sub-754006_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754006/mri/mwp1sub-754006_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754006/mri/p0sub-754006_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754006/mri/t_sub-754006_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-754006/mri/t_sub-754006_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-754006/mri/wp0sub-754006_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754006/report/cat_sub-754006_acq-headmotion1_T1w.mat (file)
add(ok): sub-754006/report/cat_sub-754006_acq-headmotion1_T1w.xml (file)
add(ok): sub-754006/report/catlog_sub-754006_acq-headmotion1_T1w.txt (file)
add(ok): sub-754006/report/catreport_sub-754006_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:10:56 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:10:57 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887079/ds/sub-754006/sub-754006_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-754006/sub-754006_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 76s
Affine preprocessing (APP)
Initialize 8s
Estimate background 9s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 9s
49s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
128s
SPM preprocessing 1 (estimate 2): 60s
SPM preprocessing 2 (write)
Write Segmentation 22s
Update Segmentation 17s
Update Skull-Stripping 48s
Update probability maps 9s
96s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 22s
Fast Optimized Shooting registration 7s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.03) 18s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 33s
110s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 21s
Blood vessel detection 12s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.22) 93s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 6s
Final corrections 3s
167s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 39s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 6s
Level 1 cleanup (brain masking) 5s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 4s
16s
12s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 51s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 37s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 17s
ROI estimation of 'mori' atlas 25s
ROI estimation of 'anatomy3' atlas 38s
ROI estimation of 'julichbrain' atlas 35s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 14s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 57s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 87s
Write results 89s
450s
Quality check 17s
/var/lib/condor/execute/dir_1887079/ds/sub-754006/report/catreport_sub-754006_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 39 second(s).
Image Quality Rating (IQR): 87.78% (B+)
GM volume (GMV): 42.08% (759.61 / 1804.97 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887079/ds/sub-754006/mri
Reports are saved in /var/lib/condor/execute/dir_1887079/ds/sub-754006/report
Labels are saved in /var/lib/condor/execute/dir_1887079/ds/sub-754006/label
------------------------------------------------------------------------
22-Oct-2025 01:39:38 - Done 'CAT12: Segmentation'
22-Oct-2025 01:39:38 - Done
Bye for now...
get(ok): sourcedata/raw/sub-754006/anat/sub-754006_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-754006/label/catROI_sub-754006_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-754006/mri/it_sub-754006_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-754006/mri/it_sub-754006_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-754006/mri/m0wp1sub-754006_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-754006/mri/mwp1sub-754006_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-754006/mri/p0sub-754006_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-754006/mri/t_sub-754006_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-754006/mri/t_sub-754006_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-754006/mri/wp0sub-754006_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-754006/report/cat_sub-754006_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-754006/report/catreport_sub-754006_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887079/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-754006/label/catROI_sub-754006_acq-standard_T1w.mat (file)
add(ok): sub-754006/label/catROI_sub-754006_acq-standard_T1w.xml (file)
add(ok): sub-754006/mri/it_sub-754006_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-754006/mri/it_sub-754006_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-754006/mri/m0wp1sub-754006_acq-standard_T1w.nii.gz (file)
add(ok): sub-754006/mri/mwp1sub-754006_acq-standard_T1w.nii.gz (file)
add(ok): sub-754006/mri/p0sub-754006_acq-standard_T1w.nii.gz (file)
add(ok): sub-754006/mri/t_sub-754006_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-754006/mri/t_sub-754006_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-754006/mri/wp0sub-754006_acq-standard_T1w.nii.gz (file)
add(ok): sub-754006/report/cat_sub-754006_acq-standard_T1w.mat (file)
add(ok): sub-754006/report/cat_sub-754006_acq-standard_T1w.xml (file)
add(ok): sub-754006/report/catlog_sub-754006_acq-standard_T1w.txt (file)
add(ok): sub-754006/report/catreport_sub-754006_acq-standard_T1w.pdf (file)
add(ok): sub-754006/label/catROI_sub-754006_acq-headmotion1_T1w.mat (file)
add(ok): sub-754006/mri/it_sub-754006_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-754006/mri/it_sub-754006_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-754006/mri/m0wp1sub-754006_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754006/mri/mwp1sub-754006_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754006/mri/p0sub-754006_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754006/mri/t_sub-754006_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-754006/mri/t_sub-754006_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-754006/mri/wp0sub-754006_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754006/report/cat_sub-754006_acq-headmotion1_T1w.mat (file)
add(ok): sub-754006/report/catreport_sub-754006_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:40:24 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:40:25 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887079/ds/sub-754006/sub-754006_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-754006/sub-754006_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 78s
Affine preprocessing (APP)
Initialize 8s
Estimate background 9s
Initial correction 8s
Refine background 4s
Final correction 7s
Final scaling 9s
51s
Correct center-of-mass 5s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
132s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 22s
Update Segmentation 17s
Update Skull-Stripping 47s
Update probability maps 9s
95s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 22s
Fast Optimized Shooting registration 11s
110s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.15) 17s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 35s
111s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 19s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.20) 104s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 6s
Final corrections 3s
177s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 37s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.970.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 6s
Level 1 cleanup (brain masking) 5s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
16s
15s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 16s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 29s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 51s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 68s
Write results 70s
320s
Quality check 15s
/var/lib/condor/execute/dir_1887079/ds/sub-754006/report/catreport_sub-754006_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 10 second(s).
Image Quality Rating (IQR): 79.93% (C+)
GM volume (GMV): 40.30% (707.37 / 1755.46 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887079/ds/sub-754006/mri
Reports are saved in /var/lib/condor/execute/dir_1887079/ds/sub-754006/report
Labels are saved in /var/lib/condor/execute/dir_1887079/ds/sub-754006/label
------------------------------------------------------------------------
22-Oct-2025 02:07:37 - Done 'CAT12: Segmentation'
22-Oct-2025 02:07:37 - Done
Bye for now...
get(ok): sourcedata/raw/sub-754006/anat/sub-754006_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-754006/label/catROI_sub-754006_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-754006/label/catROI_sub-754006_acq-standard_T1w.mat (file)
unlock(ok): sub-754006/mri/it_sub-754006_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-754006/mri/it_sub-754006_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-754006/mri/it_sub-754006_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-754006/mri/it_sub-754006_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-754006/mri/m0wp1sub-754006_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-754006/mri/m0wp1sub-754006_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-754006/mri/mwp1sub-754006_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-754006/mri/mwp1sub-754006_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-754006/mri/p0sub-754006_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-754006/mri/p0sub-754006_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-754006/mri/t_sub-754006_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-754006/mri/t_sub-754006_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-754006/mri/t_sub-754006_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-754006/mri/t_sub-754006_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-754006/mri/wp0sub-754006_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-754006/mri/wp0sub-754006_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-754006/report/cat_sub-754006_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-754006/report/cat_sub-754006_acq-standard_T1w.mat (file)
unlock(ok): sub-754006/report/catreport_sub-754006_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-754006/report/catreport_sub-754006_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887079/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-754006/label/catROI_sub-754006_acq-headmotion2_T1w.mat (file)
add(ok): sub-754006/label/catROI_sub-754006_acq-headmotion2_T1w.xml (file)
add(ok): sub-754006/mri/it_sub-754006_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-754006/mri/it_sub-754006_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-754006/mri/m0wp1sub-754006_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754006/mri/mwp1sub-754006_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754006/mri/p0sub-754006_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754006/mri/t_sub-754006_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-754006/mri/t_sub-754006_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-754006/mri/wp0sub-754006_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754006/report/cat_sub-754006_acq-headmotion2_T1w.mat (file)
add(ok): sub-754006/report/cat_sub-754006_acq-headmotion2_T1w.xml (file)
add(ok): sub-754006/report/catlog_sub-754006_acq-headmotion2_T1w.txt (file)
add(ok): sub-754006/report/catreport_sub-754006_acq-headmotion2_T1w.pdf (file)
add(ok): sub-754006/label/catROI_sub-754006_acq-headmotion1_T1w.mat (file)
add(ok): sub-754006/label/catROI_sub-754006_acq-standard_T1w.mat (file)
add(ok): sub-754006/mri/it_sub-754006_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-754006/mri/it_sub-754006_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-754006/mri/it_sub-754006_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-754006/mri/it_sub-754006_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-754006/mri/m0wp1sub-754006_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754006/mri/m0wp1sub-754006_acq-standard_T1w.nii.gz (file)
add(ok): sub-754006/mri/mwp1sub-754006_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754006/mri/mwp1sub-754006_acq-standard_T1w.nii.gz (file)
add(ok): sub-754006/mri/p0sub-754006_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754006/mri/p0sub-754006_acq-standard_T1w.nii.gz (file)
add(ok): sub-754006/mri/t_sub-754006_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-754006/mri/t_sub-754006_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-754006/mri/t_sub-754006_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-754006/mri/t_sub-754006_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-754006/mri/wp0sub-754006_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754006/mri/wp0sub-754006_acq-standard_T1w.nii.gz (file)
add(ok): sub-754006/report/cat_sub-754006_acq-headmotion1_T1w.mat (file)
add(ok): sub-754006/report/cat_sub-754006_acq-standard_T1w.mat (file)
add(ok): sub-754006/report/catreport_sub-754006_acq-headmotion1_T1w.pdf (file)
add(ok): sub-754006/report/catreport_sub-754006_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-754006/label/catROI_sub-754006_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/label/catROI_sub-754006_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/label/catROI_sub-754006_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/it_sub-754006_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/it_sub-754006_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/it_sub-754006_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/it_sub-754006_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/it_sub-754006_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/it_sub-754006_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/m0wp1sub-754006_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/m0wp1sub-754006_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/m0wp1sub-754006_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/mwp1sub-754006_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/mwp1sub-754006_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/mwp1sub-754006_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/p0sub-754006_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/p0sub-754006_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/p0sub-754006_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/t_sub-754006_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/t_sub-754006_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/t_sub-754006_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/t_sub-754006_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/t_sub-754006_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/t_sub-754006_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/wp0sub-754006_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/wp0sub-754006_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754006/mri/wp0sub-754006_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754006/report/cat_sub-754006_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/report/cat_sub-754006_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/report/cat_sub-754006_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-754006/report/catreport_sub-754006_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-754006/report/catreport_sub-754006_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-754006/report/catreport_sub-754006_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.509379 seconds
flock: executing git
SUCCESS
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