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ds004173-catqc/logs/10070993.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1887068/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887068/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887068/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887068/ds/sub-401697/sub-401697_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-401697/sub-401697_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 64s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
47s
Correct center-of-mass 5s
Affine registration 29s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
79s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 11s
90s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 11s
108s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.13) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
94s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 13s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.14) 68s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
122s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 37s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 28s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 17s
ROI estimation of 'mori' atlas 24s
ROI estimation of 'anatomy3' atlas 45s
ROI estimation of 'julichbrain' atlas 60s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 100s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 139s
Write results 141s
580s
Quality check 17s
/var/lib/condor/execute/dir_1887068/ds/sub-401697/report/catreport_sub-401697_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 58 second(s).
Image Quality Rating (IQR): 84.99% (B)
GM volume (GMV): 42.26% (573.56 / 1357.12 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887068/ds/sub-401697/mri
Reports are saved in /var/lib/condor/execute/dir_1887068/ds/sub-401697/report
Labels are saved in /var/lib/condor/execute/dir_1887068/ds/sub-401697/label
------------------------------------------------------------------------
22-Oct-2025 01:08:43 - Done 'CAT12: Segmentation'
22-Oct-2025 01:08:43 - Done
Bye for now...
get(ok): sourcedata/raw/sub-401697/anat/sub-401697_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887068/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887068/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-401697/label/catROI_sub-401697_acq-headmotion2_T1w.mat (file)
add(ok): sub-401697/label/catROI_sub-401697_acq-headmotion2_T1w.xml (file)
add(ok): sub-401697/mri/it_sub-401697_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-401697/mri/it_sub-401697_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-401697/mri/m0wp1sub-401697_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-401697/mri/mwp1sub-401697_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-401697/mri/p0sub-401697_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-401697/mri/t_sub-401697_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-401697/mri/t_sub-401697_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-401697/mri/wp0sub-401697_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-401697/report/cat_sub-401697_acq-headmotion2_T1w.mat (file)
add(ok): sub-401697/report/cat_sub-401697_acq-headmotion2_T1w.xml (file)
add(ok): sub-401697/report/catlog_sub-401697_acq-headmotion2_T1w.txt (file)
add(ok): sub-401697/report/catreport_sub-401697_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:09:33 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:09:33 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887068/ds/sub-401697/sub-401697_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-401697/sub-401697_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
71s
SPM preprocessing 1 (estimate 2): 59s
SPM preprocessing 2 (write)
Write Segmentation 22s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 9s
91s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 8s
106s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.07) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
99s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.14) 66s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
126s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 32s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 24s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 23s
ROI estimation of 'anatomy3' atlas 35s
ROI estimation of 'julichbrain' atlas 46s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 19s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 38s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 84s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 135s
Write results 138s
503s
Quality check 16s
/var/lib/condor/execute/dir_1887068/ds/sub-401697/report/catreport_sub-401697_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 50 second(s).
Image Quality Rating (IQR): 87.83% (B+)
GM volume (GMV): 44.03% (617.62 / 1402.58 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887068/ds/sub-401697/mri
Reports are saved in /var/lib/condor/execute/dir_1887068/ds/sub-401697/report
Labels are saved in /var/lib/condor/execute/dir_1887068/ds/sub-401697/label
------------------------------------------------------------------------
22-Oct-2025 01:35:26 - Done 'CAT12: Segmentation'
22-Oct-2025 01:35:26 - Done
Bye for now...
get(ok): sourcedata/raw/sub-401697/anat/sub-401697_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-401697/label/catROI_sub-401697_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-401697/mri/it_sub-401697_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-401697/mri/it_sub-401697_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-401697/mri/m0wp1sub-401697_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-401697/mri/mwp1sub-401697_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-401697/mri/p0sub-401697_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-401697/mri/t_sub-401697_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-401697/mri/t_sub-401697_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-401697/mri/wp0sub-401697_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-401697/report/cat_sub-401697_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-401697/report/catreport_sub-401697_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887068/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-401697/label/catROI_sub-401697_acq-standard_T1w.mat (file)
add(ok): sub-401697/label/catROI_sub-401697_acq-standard_T1w.xml (file)
add(ok): sub-401697/mri/it_sub-401697_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-401697/mri/it_sub-401697_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-401697/mri/m0wp1sub-401697_acq-standard_T1w.nii.gz (file)
add(ok): sub-401697/mri/mwp1sub-401697_acq-standard_T1w.nii.gz (file)
add(ok): sub-401697/mri/p0sub-401697_acq-standard_T1w.nii.gz (file)
add(ok): sub-401697/mri/t_sub-401697_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-401697/mri/t_sub-401697_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-401697/mri/wp0sub-401697_acq-standard_T1w.nii.gz (file)
add(ok): sub-401697/report/cat_sub-401697_acq-standard_T1w.mat (file)
add(ok): sub-401697/report/cat_sub-401697_acq-standard_T1w.xml (file)
add(ok): sub-401697/report/catlog_sub-401697_acq-standard_T1w.txt (file)
add(ok): sub-401697/report/catreport_sub-401697_acq-standard_T1w.pdf (file)
add(ok): sub-401697/label/catROI_sub-401697_acq-headmotion2_T1w.mat (file)
add(ok): sub-401697/mri/it_sub-401697_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-401697/mri/it_sub-401697_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-401697/mri/m0wp1sub-401697_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-401697/mri/mwp1sub-401697_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-401697/mri/p0sub-401697_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-401697/mri/t_sub-401697_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-401697/mri/t_sub-401697_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-401697/mri/wp0sub-401697_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-401697/report/cat_sub-401697_acq-headmotion2_T1w.mat (file)
add(ok): sub-401697/report/catreport_sub-401697_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:36:20 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:36:20 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887068/ds/sub-401697/sub-401697_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-401697/sub-401697_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 66s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 9s
49s
Correct center-of-mass 9s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
76s
SPM preprocessing 1 (estimate 2): 62s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 15s
Update Skull-Stripping 44s
Update probability maps 9s
89s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 10s
112s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.05) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
98s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 14s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 68s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
124s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 17s
ROI estimation of 'anatomy3' atlas 27s
ROI estimation of 'julichbrain' atlas 38s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 17s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 32s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 73s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 106s
Write results 108s
416s
Quality check 14s
/var/lib/condor/execute/dir_1887068/ds/sub-401697/report/catreport_sub-401697_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 43 second(s).
Image Quality Rating (IQR): 83.05% (B-)
GM volume (GMV): 43.32% (586.89 / 1354.69 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887068/ds/sub-401697/mri
Reports are saved in /var/lib/condor/execute/dir_1887068/ds/sub-401697/report
Labels are saved in /var/lib/condor/execute/dir_1887068/ds/sub-401697/label
------------------------------------------------------------------------
22-Oct-2025 02:01:06 - Done 'CAT12: Segmentation'
22-Oct-2025 02:01:06 - Done
Bye for now...
get(ok): sourcedata/raw/sub-401697/anat/sub-401697_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-401697/label/catROI_sub-401697_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-401697/label/catROI_sub-401697_acq-standard_T1w.mat (file)
unlock(ok): sub-401697/mri/it_sub-401697_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-401697/mri/it_sub-401697_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-401697/mri/it_sub-401697_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-401697/mri/it_sub-401697_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-401697/mri/m0wp1sub-401697_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-401697/mri/m0wp1sub-401697_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-401697/mri/mwp1sub-401697_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-401697/mri/mwp1sub-401697_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-401697/mri/p0sub-401697_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-401697/mri/p0sub-401697_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-401697/mri/t_sub-401697_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-401697/mri/t_sub-401697_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-401697/mri/t_sub-401697_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-401697/mri/t_sub-401697_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-401697/mri/wp0sub-401697_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-401697/mri/wp0sub-401697_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-401697/report/cat_sub-401697_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-401697/report/cat_sub-401697_acq-standard_T1w.mat (file)
unlock(ok): sub-401697/report/catreport_sub-401697_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-401697/report/catreport_sub-401697_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887068/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-401697/label/catROI_sub-401697_acq-headmotion1_T1w.mat (file)
add(ok): sub-401697/label/catROI_sub-401697_acq-headmotion1_T1w.xml (file)
add(ok): sub-401697/mri/it_sub-401697_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-401697/mri/it_sub-401697_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-401697/mri/m0wp1sub-401697_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-401697/mri/mwp1sub-401697_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-401697/mri/p0sub-401697_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-401697/mri/t_sub-401697_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-401697/mri/t_sub-401697_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-401697/mri/wp0sub-401697_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-401697/report/cat_sub-401697_acq-headmotion1_T1w.mat (file)
add(ok): sub-401697/report/cat_sub-401697_acq-headmotion1_T1w.xml (file)
add(ok): sub-401697/report/catlog_sub-401697_acq-headmotion1_T1w.txt (file)
add(ok): sub-401697/report/catreport_sub-401697_acq-headmotion1_T1w.pdf (file)
add(ok): sub-401697/label/catROI_sub-401697_acq-headmotion2_T1w.mat (file)
add(ok): sub-401697/label/catROI_sub-401697_acq-standard_T1w.mat (file)
add(ok): sub-401697/mri/it_sub-401697_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-401697/mri/it_sub-401697_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-401697/mri/it_sub-401697_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-401697/mri/it_sub-401697_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-401697/mri/m0wp1sub-401697_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-401697/mri/m0wp1sub-401697_acq-standard_T1w.nii.gz (file)
add(ok): sub-401697/mri/mwp1sub-401697_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-401697/mri/mwp1sub-401697_acq-standard_T1w.nii.gz (file)
add(ok): sub-401697/mri/p0sub-401697_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-401697/mri/p0sub-401697_acq-standard_T1w.nii.gz (file)
add(ok): sub-401697/mri/t_sub-401697_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-401697/mri/t_sub-401697_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-401697/mri/t_sub-401697_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-401697/mri/t_sub-401697_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-401697/mri/wp0sub-401697_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-401697/mri/wp0sub-401697_acq-standard_T1w.nii.gz (file)
add(ok): sub-401697/report/cat_sub-401697_acq-headmotion2_T1w.mat (file)
add(ok): sub-401697/report/cat_sub-401697_acq-standard_T1w.mat (file)
add(ok): sub-401697/report/catreport_sub-401697_acq-headmotion2_T1w.pdf (file)
add(ok): sub-401697/report/catreport_sub-401697_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-401697/label/catROI_sub-401697_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/label/catROI_sub-401697_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/label/catROI_sub-401697_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/it_sub-401697_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/it_sub-401697_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/it_sub-401697_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/it_sub-401697_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/it_sub-401697_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/it_sub-401697_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/m0wp1sub-401697_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/m0wp1sub-401697_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/m0wp1sub-401697_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/mwp1sub-401697_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/mwp1sub-401697_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/mwp1sub-401697_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/p0sub-401697_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/p0sub-401697_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/p0sub-401697_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/t_sub-401697_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/t_sub-401697_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/t_sub-401697_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/t_sub-401697_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/t_sub-401697_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/t_sub-401697_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/wp0sub-401697_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/wp0sub-401697_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-401697/mri/wp0sub-401697_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-401697/report/cat_sub-401697_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/report/cat_sub-401697_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/report/cat_sub-401697_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-401697/report/catreport_sub-401697_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-401697/report/catreport_sub-401697_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-401697/report/catreport_sub-401697_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000060 seconds
flock: executing git
SUCCESS
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