f.hoffstaedter/ds004173-catqc
1
0
Fork 0
Code Pull requests Packages Activity
ds004173-catqc/logs/10070992.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

597 lines
37 KiB (Stored with Git Annex)
Text
Raw Permalink Blame History

This file contains invisible Unicode characters

This file contains invisible Unicode characters that are indistinguishable to humans but may be processed differently by a computer. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

install(ok): /var/lib/condor/execute/dir_1887056/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887056/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887056/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887056/ds/sub-603309/sub-603309_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-603309/sub-603309_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 72s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 8s
46s
Correct center-of-mass 7s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
87s
SPM preprocessing 1 (estimate 2): 61s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 46s
Update probability maps 9s
92s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 7s
106s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.53) 15s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 18s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
92s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 19s
Ventricle detection 14s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.19) 71s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
130s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.970.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
5s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 50s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 36s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 22s
ROI estimation of 'mori' atlas 32s
ROI estimation of 'anatomy3' atlas 46s
ROI estimation of 'julichbrain' atlas 61s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 50s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 100s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 134s
Write results 137s
627s
Quality check 15s
/var/lib/condor/execute/dir_1887056/ds/sub-603309/report/catreport_sub-603309_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 36 second(s).
Image Quality Rating (IQR): 78.94% (C+)
GM volume (GMV): 40.08% (614.25 / 1532.74 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887056/ds/sub-603309/mri
Reports are saved in /var/lib/condor/execute/dir_1887056/ds/sub-603309/report
Labels are saved in /var/lib/condor/execute/dir_1887056/ds/sub-603309/label
------------------------------------------------------------------------
22-Oct-2025 01:09:21 - Done 'CAT12: Segmentation'
22-Oct-2025 01:09:21 - Done
Bye for now...
get(ok): sourcedata/raw/sub-603309/anat/sub-603309_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887056/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887056/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-603309/label/catROI_sub-603309_acq-headmotion2_T1w.mat (file)
add(ok): sub-603309/label/catROI_sub-603309_acq-headmotion2_T1w.xml (file)
add(ok): sub-603309/mri/it_sub-603309_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-603309/mri/it_sub-603309_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-603309/mri/m0wp1sub-603309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-603309/mri/mwp1sub-603309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-603309/mri/p0sub-603309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-603309/mri/t_sub-603309_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-603309/mri/t_sub-603309_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-603309/mri/wp0sub-603309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-603309/report/cat_sub-603309_acq-headmotion2_T1w.mat (file)
add(ok): sub-603309/report/cat_sub-603309_acq-headmotion2_T1w.xml (file)
add(ok): sub-603309/report/catlog_sub-603309_acq-headmotion2_T1w.txt (file)
add(ok): sub-603309/report/catreport_sub-603309_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:10:03 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:10:03 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887056/ds/sub-603309/sub-603309_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-603309/sub-603309_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 72s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
43s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
88s
SPM preprocessing 1 (estimate 2): 66s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 44s
Update probability maps 9s
90s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 10s
108s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.18) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
97s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 19s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.23) 58s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
120s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 49s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 35s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 22s
ROI estimation of 'mori' atlas 32s
ROI estimation of 'anatomy3' atlas 46s
ROI estimation of 'julichbrain' atlas 60s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 96s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 103s
Write results 105s
582s
Quality check 16s
/var/lib/condor/execute/dir_1887056/ds/sub-603309/report/catreport_sub-603309_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 42 second(s).
Image Quality Rating (IQR): 85.81% (B)
GM volume (GMV): 40.60% (617.77 / 1521.48 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887056/ds/sub-603309/mri
Reports are saved in /var/lib/condor/execute/dir_1887056/ds/sub-603309/report
Labels are saved in /var/lib/condor/execute/dir_1887056/ds/sub-603309/label
------------------------------------------------------------------------
22-Oct-2025 01:37:48 - Done 'CAT12: Segmentation'
22-Oct-2025 01:37:48 - Done
Bye for now...
get(ok): sourcedata/raw/sub-603309/anat/sub-603309_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-603309/label/catROI_sub-603309_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-603309/mri/it_sub-603309_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-603309/mri/it_sub-603309_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-603309/mri/m0wp1sub-603309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-603309/mri/mwp1sub-603309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-603309/mri/p0sub-603309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-603309/mri/t_sub-603309_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-603309/mri/t_sub-603309_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-603309/mri/wp0sub-603309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-603309/report/cat_sub-603309_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-603309/report/catreport_sub-603309_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887056/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-603309/label/catROI_sub-603309_acq-headmotion1_T1w.mat (file)
add(ok): sub-603309/label/catROI_sub-603309_acq-headmotion1_T1w.xml (file)
add(ok): sub-603309/mri/it_sub-603309_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-603309/mri/it_sub-603309_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-603309/mri/m0wp1sub-603309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-603309/mri/mwp1sub-603309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-603309/mri/p0sub-603309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-603309/mri/t_sub-603309_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-603309/mri/t_sub-603309_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-603309/mri/wp0sub-603309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-603309/report/cat_sub-603309_acq-headmotion1_T1w.mat (file)
add(ok): sub-603309/report/cat_sub-603309_acq-headmotion1_T1w.xml (file)
add(ok): sub-603309/report/catlog_sub-603309_acq-headmotion1_T1w.txt (file)
add(ok): sub-603309/report/catreport_sub-603309_acq-headmotion1_T1w.pdf (file)
add(ok): sub-603309/label/catROI_sub-603309_acq-headmotion2_T1w.mat (file)
add(ok): sub-603309/mri/it_sub-603309_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-603309/mri/it_sub-603309_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-603309/mri/m0wp1sub-603309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-603309/mri/mwp1sub-603309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-603309/mri/p0sub-603309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-603309/mri/t_sub-603309_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-603309/mri/t_sub-603309_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-603309/mri/wp0sub-603309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-603309/report/cat_sub-603309_acq-headmotion2_T1w.mat (file)
add(ok): sub-603309/report/catreport_sub-603309_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:38:31 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:38:31 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887056/ds/sub-603309/sub-603309_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-603309/sub-603309_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 75s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
44s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 9s
90s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 6s
106s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.11) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
100s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 20s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.23) 80s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
145s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 12s
ROI estimation of 'neuromorphometrics' atlas 47s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 35s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 31s
ROI estimation of 'anatomy3' atlas 44s
ROI estimation of 'julichbrain' atlas 55s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 41s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 79s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 86s
Write results 88s
526s
Quality check 13s
/var/lib/condor/execute/dir_1887056/ds/sub-603309/report/catreport_sub-603309_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 50 second(s).
Image Quality Rating (IQR): 87.83% (B+)
GM volume (GMV): 42.29% (646.58 / 1528.76 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887056/ds/sub-603309/mri
Reports are saved in /var/lib/condor/execute/dir_1887056/ds/sub-603309/report
Labels are saved in /var/lib/condor/execute/dir_1887056/ds/sub-603309/label
------------------------------------------------------------------------
22-Oct-2025 02:05:23 - Done 'CAT12: Segmentation'
22-Oct-2025 02:05:23 - Done
Bye for now...
get(ok): sourcedata/raw/sub-603309/anat/sub-603309_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-603309/label/catROI_sub-603309_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-603309/label/catROI_sub-603309_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-603309/mri/it_sub-603309_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-603309/mri/it_sub-603309_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-603309/mri/it_sub-603309_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-603309/mri/it_sub-603309_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-603309/mri/m0wp1sub-603309_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-603309/mri/m0wp1sub-603309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-603309/mri/mwp1sub-603309_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-603309/mri/mwp1sub-603309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-603309/mri/p0sub-603309_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-603309/mri/p0sub-603309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-603309/mri/t_sub-603309_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-603309/mri/t_sub-603309_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-603309/mri/t_sub-603309_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-603309/mri/t_sub-603309_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-603309/mri/wp0sub-603309_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-603309/mri/wp0sub-603309_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-603309/report/cat_sub-603309_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-603309/report/cat_sub-603309_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-603309/report/catreport_sub-603309_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-603309/report/catreport_sub-603309_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887056/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-603309/label/catROI_sub-603309_acq-standard_T1w.mat (file)
add(ok): sub-603309/label/catROI_sub-603309_acq-standard_T1w.xml (file)
add(ok): sub-603309/mri/it_sub-603309_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-603309/mri/it_sub-603309_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-603309/mri/m0wp1sub-603309_acq-standard_T1w.nii.gz (file)
add(ok): sub-603309/mri/mwp1sub-603309_acq-standard_T1w.nii.gz (file)
add(ok): sub-603309/mri/p0sub-603309_acq-standard_T1w.nii.gz (file)
add(ok): sub-603309/mri/t_sub-603309_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-603309/mri/t_sub-603309_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-603309/mri/wp0sub-603309_acq-standard_T1w.nii.gz (file)
add(ok): sub-603309/report/cat_sub-603309_acq-standard_T1w.mat (file)
add(ok): sub-603309/report/cat_sub-603309_acq-standard_T1w.xml (file)
add(ok): sub-603309/report/catlog_sub-603309_acq-standard_T1w.txt (file)
add(ok): sub-603309/report/catreport_sub-603309_acq-standard_T1w.pdf (file)
add(ok): sub-603309/label/catROI_sub-603309_acq-headmotion1_T1w.mat (file)
add(ok): sub-603309/label/catROI_sub-603309_acq-headmotion2_T1w.mat (file)
add(ok): sub-603309/mri/it_sub-603309_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-603309/mri/it_sub-603309_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-603309/mri/it_sub-603309_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-603309/mri/it_sub-603309_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-603309/mri/m0wp1sub-603309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-603309/mri/m0wp1sub-603309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-603309/mri/mwp1sub-603309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-603309/mri/mwp1sub-603309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-603309/mri/p0sub-603309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-603309/mri/p0sub-603309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-603309/mri/t_sub-603309_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-603309/mri/t_sub-603309_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-603309/mri/t_sub-603309_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-603309/mri/t_sub-603309_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-603309/mri/wp0sub-603309_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-603309/mri/wp0sub-603309_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-603309/report/cat_sub-603309_acq-headmotion1_T1w.mat (file)
add(ok): sub-603309/report/cat_sub-603309_acq-headmotion2_T1w.mat (file)
add(ok): sub-603309/report/catreport_sub-603309_acq-headmotion1_T1w.pdf (file)
add(ok): sub-603309/report/catreport_sub-603309_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-603309/label/catROI_sub-603309_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/label/catROI_sub-603309_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/label/catROI_sub-603309_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/it_sub-603309_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/it_sub-603309_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/it_sub-603309_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/it_sub-603309_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/it_sub-603309_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/it_sub-603309_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/m0wp1sub-603309_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/m0wp1sub-603309_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/m0wp1sub-603309_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/mwp1sub-603309_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/mwp1sub-603309_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/mwp1sub-603309_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/p0sub-603309_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/p0sub-603309_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/p0sub-603309_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/t_sub-603309_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/t_sub-603309_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/t_sub-603309_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/t_sub-603309_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/t_sub-603309_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/t_sub-603309_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/wp0sub-603309_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/wp0sub-603309_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-603309/mri/wp0sub-603309_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-603309/report/cat_sub-603309_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/report/cat_sub-603309_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/report/cat_sub-603309_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-603309/report/catreport_sub-603309_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-603309/report/catreport_sub-603309_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-603309/report/catreport_sub-603309_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000030 seconds
flock: executing git
SUCCESS
View git blame Copy permalink