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ds004173-catqc/logs/10070991.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1887045/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887045/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887045/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:41 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887045/ds/sub-788339/sub-788339_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-788339/sub-788339_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
45s
Correct center-of-mass 5s
Affine registration 13s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
91s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 9s
91s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 11s
110s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
97s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 15s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 64s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
122s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 42s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 35s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 31s
ROI estimation of 'anatomy3' atlas 45s
ROI estimation of 'julichbrain' atlas 60s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 99s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 143s
Write results 145s
614s
Quality check 16s
/var/lib/condor/execute/dir_1887045/ds/sub-788339/report/catreport_sub-788339_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 5 second(s).
Image Quality Rating (IQR): 86.16% (B)
GM volume (GMV): 42.17% (621.50 / 1473.74 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887045/ds/sub-788339/mri
Reports are saved in /var/lib/condor/execute/dir_1887045/ds/sub-788339/report
Labels are saved in /var/lib/condor/execute/dir_1887045/ds/sub-788339/label
------------------------------------------------------------------------
22-Oct-2025 01:08:49 - Done 'CAT12: Segmentation'
22-Oct-2025 01:08:49 - Done
Bye for now...
get(ok): sourcedata/raw/sub-788339/anat/sub-788339_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887045/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887045/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-788339/label/catROI_sub-788339_acq-headmotion1_T1w.mat (file)
add(ok): sub-788339/label/catROI_sub-788339_acq-headmotion1_T1w.xml (file)
add(ok): sub-788339/mri/it_sub-788339_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-788339/mri/it_sub-788339_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-788339/mri/m0wp1sub-788339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-788339/mri/mwp1sub-788339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-788339/mri/p0sub-788339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-788339/mri/t_sub-788339_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-788339/mri/t_sub-788339_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-788339/mri/wp0sub-788339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-788339/report/cat_sub-788339_acq-headmotion1_T1w.mat (file)
add(ok): sub-788339/report/cat_sub-788339_acq-headmotion1_T1w.xml (file)
add(ok): sub-788339/report/catlog_sub-788339_acq-headmotion1_T1w.txt (file)
add(ok): sub-788339/report/catreport_sub-788339_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:09:36 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:09:37 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887045/ds/sub-788339/sub-788339_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-788339/sub-788339_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 60s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 8s
47s
Correct center-of-mass 4s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
88s
SPM preprocessing 1 (estimate 2): 68s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 9s
90s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 11s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.13) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
96s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 13s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 71s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
127s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.970.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 42s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 35s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 31s
ROI estimation of 'anatomy3' atlas 45s
ROI estimation of 'julichbrain' atlas 61s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 48s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 97s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 121s
Write results 123s
587s
Quality check 15s
/var/lib/condor/execute/dir_1887045/ds/sub-788339/report/catreport_sub-788339_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 53 second(s).
Image Quality Rating (IQR): 81.61% (B-)
GM volume (GMV): 42.83% (619.16 / 1445.78 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887045/ds/sub-788339/mri
Reports are saved in /var/lib/condor/execute/dir_1887045/ds/sub-788339/report
Labels are saved in /var/lib/condor/execute/dir_1887045/ds/sub-788339/label
------------------------------------------------------------------------
22-Oct-2025 01:37:32 - Done 'CAT12: Segmentation'
22-Oct-2025 01:37:32 - Done
Bye for now...
get(ok): sourcedata/raw/sub-788339/anat/sub-788339_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-788339/label/catROI_sub-788339_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-788339/mri/it_sub-788339_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-788339/mri/it_sub-788339_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-788339/mri/m0wp1sub-788339_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-788339/mri/mwp1sub-788339_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-788339/mri/p0sub-788339_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-788339/mri/t_sub-788339_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-788339/mri/t_sub-788339_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-788339/mri/wp0sub-788339_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-788339/report/cat_sub-788339_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-788339/report/catreport_sub-788339_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887045/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-788339/label/catROI_sub-788339_acq-headmotion2_T1w.mat (file)
add(ok): sub-788339/label/catROI_sub-788339_acq-headmotion2_T1w.xml (file)
add(ok): sub-788339/mri/it_sub-788339_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-788339/mri/it_sub-788339_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-788339/mri/m0wp1sub-788339_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-788339/mri/mwp1sub-788339_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-788339/mri/p0sub-788339_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-788339/mri/t_sub-788339_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-788339/mri/t_sub-788339_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-788339/mri/wp0sub-788339_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-788339/report/cat_sub-788339_acq-headmotion2_T1w.mat (file)
add(ok): sub-788339/report/cat_sub-788339_acq-headmotion2_T1w.xml (file)
add(ok): sub-788339/report/catlog_sub-788339_acq-headmotion2_T1w.txt (file)
add(ok): sub-788339/report/catreport_sub-788339_acq-headmotion2_T1w.pdf (file)
add(ok): sub-788339/label/catROI_sub-788339_acq-headmotion1_T1w.mat (file)
add(ok): sub-788339/mri/it_sub-788339_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-788339/mri/it_sub-788339_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-788339/mri/m0wp1sub-788339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-788339/mri/mwp1sub-788339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-788339/mri/p0sub-788339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-788339/mri/t_sub-788339_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-788339/mri/t_sub-788339_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-788339/mri/wp0sub-788339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-788339/report/cat_sub-788339_acq-headmotion1_T1w.mat (file)
add(ok): sub-788339/report/catreport_sub-788339_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:38:15 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:38:16 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887045/ds/sub-788339/sub-788339_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-788339/sub-788339_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 60s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
45s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 63s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 9s
90s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 11s
110s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
100s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 18s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.09) 79s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
143s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 39s
ROI estimation of 'lpba40' atlas 13s
ROI estimation of 'hammers' atlas 32s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 29s
ROI estimation of 'anatomy3' atlas 43s
ROI estimation of 'julichbrain' atlas 55s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 42s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 77s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 100s
Write results 102s
518s
Quality check 14s
/var/lib/condor/execute/dir_1887045/ds/sub-788339/report/catreport_sub-788339_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 28 second(s).
Image Quality Rating (IQR): 87.73% (B+)
GM volume (GMV): 43.36% (644.91 / 1487.19 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887045/ds/sub-788339/mri
Reports are saved in /var/lib/condor/execute/dir_1887045/ds/sub-788339/report
Labels are saved in /var/lib/condor/execute/dir_1887045/ds/sub-788339/label
------------------------------------------------------------------------
22-Oct-2025 02:04:46 - Done 'CAT12: Segmentation'
22-Oct-2025 02:04:46 - Done
Bye for now...
get(ok): sourcedata/raw/sub-788339/anat/sub-788339_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-788339/label/catROI_sub-788339_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-788339/label/catROI_sub-788339_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-788339/mri/it_sub-788339_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-788339/mri/it_sub-788339_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-788339/mri/it_sub-788339_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-788339/mri/it_sub-788339_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-788339/mri/m0wp1sub-788339_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-788339/mri/m0wp1sub-788339_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-788339/mri/mwp1sub-788339_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-788339/mri/mwp1sub-788339_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-788339/mri/p0sub-788339_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-788339/mri/p0sub-788339_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-788339/mri/t_sub-788339_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-788339/mri/t_sub-788339_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-788339/mri/t_sub-788339_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-788339/mri/t_sub-788339_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-788339/mri/wp0sub-788339_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-788339/mri/wp0sub-788339_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-788339/report/cat_sub-788339_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-788339/report/cat_sub-788339_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-788339/report/catreport_sub-788339_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-788339/report/catreport_sub-788339_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887045/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-788339/label/catROI_sub-788339_acq-standard_T1w.mat (file)
add(ok): sub-788339/label/catROI_sub-788339_acq-standard_T1w.xml (file)
add(ok): sub-788339/mri/it_sub-788339_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-788339/mri/it_sub-788339_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-788339/mri/m0wp1sub-788339_acq-standard_T1w.nii.gz (file)
add(ok): sub-788339/mri/mwp1sub-788339_acq-standard_T1w.nii.gz (file)
add(ok): sub-788339/mri/p0sub-788339_acq-standard_T1w.nii.gz (file)
add(ok): sub-788339/mri/t_sub-788339_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-788339/mri/t_sub-788339_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-788339/mri/wp0sub-788339_acq-standard_T1w.nii.gz (file)
add(ok): sub-788339/report/cat_sub-788339_acq-standard_T1w.mat (file)
add(ok): sub-788339/report/cat_sub-788339_acq-standard_T1w.xml (file)
add(ok): sub-788339/report/catlog_sub-788339_acq-standard_T1w.txt (file)
add(ok): sub-788339/report/catreport_sub-788339_acq-standard_T1w.pdf (file)
add(ok): sub-788339/label/catROI_sub-788339_acq-headmotion1_T1w.mat (file)
add(ok): sub-788339/label/catROI_sub-788339_acq-headmotion2_T1w.mat (file)
add(ok): sub-788339/mri/it_sub-788339_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-788339/mri/it_sub-788339_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-788339/mri/it_sub-788339_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-788339/mri/it_sub-788339_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-788339/mri/m0wp1sub-788339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-788339/mri/m0wp1sub-788339_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-788339/mri/mwp1sub-788339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-788339/mri/mwp1sub-788339_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-788339/mri/p0sub-788339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-788339/mri/p0sub-788339_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-788339/mri/t_sub-788339_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-788339/mri/t_sub-788339_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-788339/mri/t_sub-788339_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-788339/mri/t_sub-788339_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-788339/mri/wp0sub-788339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-788339/mri/wp0sub-788339_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-788339/report/cat_sub-788339_acq-headmotion1_T1w.mat (file)
add(ok): sub-788339/report/cat_sub-788339_acq-headmotion2_T1w.mat (file)
add(ok): sub-788339/report/catreport_sub-788339_acq-headmotion1_T1w.pdf (file)
add(ok): sub-788339/report/catreport_sub-788339_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-788339/label/catROI_sub-788339_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/label/catROI_sub-788339_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/label/catROI_sub-788339_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/it_sub-788339_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/it_sub-788339_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/it_sub-788339_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/it_sub-788339_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/it_sub-788339_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/it_sub-788339_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/m0wp1sub-788339_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/m0wp1sub-788339_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/m0wp1sub-788339_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/mwp1sub-788339_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/mwp1sub-788339_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/mwp1sub-788339_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/p0sub-788339_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/p0sub-788339_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/p0sub-788339_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/t_sub-788339_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/t_sub-788339_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/t_sub-788339_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/t_sub-788339_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/t_sub-788339_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/t_sub-788339_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/wp0sub-788339_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/wp0sub-788339_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-788339/mri/wp0sub-788339_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-788339/report/cat_sub-788339_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/report/cat_sub-788339_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/report/cat_sub-788339_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-788339/report/catreport_sub-788339_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-788339/report/catreport_sub-788339_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-788339/report/catreport_sub-788339_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.002347 seconds
flock: executing git
SUCCESS
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