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ds004173-catqc/logs/10070990.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1887033/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887033/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887033/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887033/ds/sub-567742/sub-567742_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-567742/sub-567742_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
43s
Correct center-of-mass 8s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
94s
SPM preprocessing 1 (estimate 2): 54s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 44s
Update probability maps 9s
90s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 11s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.04) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
100s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 19s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 76s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
139s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.05,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 38s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 34s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 31s
ROI estimation of 'anatomy3' atlas 45s
ROI estimation of 'julichbrain' atlas 60s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 99s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 146s
Write results 149s
607s
Quality check 16s
/var/lib/condor/execute/dir_1887033/ds/sub-567742/report/catreport_sub-567742_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 56 second(s).
Image Quality Rating (IQR): 87.89% (B+)
GM volume (GMV): 50.19% (736.31 / 1467.16 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887033/ds/sub-567742/mri
Reports are saved in /var/lib/condor/execute/dir_1887033/ds/sub-567742/report
Labels are saved in /var/lib/condor/execute/dir_1887033/ds/sub-567742/label
------------------------------------------------------------------------
22-Oct-2025 01:08:40 - Done 'CAT12: Segmentation'
22-Oct-2025 01:08:40 - Done
Bye for now...
get(ok): sourcedata/raw/sub-567742/anat/sub-567742_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887033/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887033/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-567742/label/catROI_sub-567742_acq-headmotion1_T1w.mat (file)
add(ok): sub-567742/label/catROI_sub-567742_acq-headmotion1_T1w.xml (file)
add(ok): sub-567742/mri/it_sub-567742_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-567742/mri/it_sub-567742_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-567742/mri/m0wp1sub-567742_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-567742/mri/mwp1sub-567742_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-567742/mri/p0sub-567742_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-567742/mri/t_sub-567742_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-567742/mri/t_sub-567742_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-567742/mri/wp0sub-567742_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-567742/report/cat_sub-567742_acq-headmotion1_T1w.mat (file)
add(ok): sub-567742/report/cat_sub-567742_acq-headmotion1_T1w.xml (file)
add(ok): sub-567742/report/catlog_sub-567742_acq-headmotion1_T1w.txt (file)
add(ok): sub-567742/report/catreport_sub-567742_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:09:28 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:09:28 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887033/ds/sub-567742/sub-567742_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-567742/sub-567742_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 65s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
42s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 51s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 45s
Update probability maps 9s
90s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 11s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.08) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
101s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 19s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 75s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
138s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 32s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 29s
ROI estimation of 'anatomy3' atlas 43s
ROI estimation of 'julichbrain' atlas 58s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 98s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 143s
Write results 146s
569s
Quality check 16s
/var/lib/condor/execute/dir_1887033/ds/sub-567742/report/catreport_sub-567742_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 57 second(s).
Image Quality Rating (IQR): 87.96% (B+)
GM volume (GMV): 50.55% (741.86 / 1467.52 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887033/ds/sub-567742/mri
Reports are saved in /var/lib/condor/execute/dir_1887033/ds/sub-567742/report
Labels are saved in /var/lib/condor/execute/dir_1887033/ds/sub-567742/label
------------------------------------------------------------------------
22-Oct-2025 01:36:28 - Done 'CAT12: Segmentation'
22-Oct-2025 01:36:28 - Done
Bye for now...
get(ok): sourcedata/raw/sub-567742/anat/sub-567742_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-567742/label/catROI_sub-567742_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-567742/mri/it_sub-567742_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-567742/mri/it_sub-567742_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-567742/mri/m0wp1sub-567742_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-567742/mri/mwp1sub-567742_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-567742/mri/p0sub-567742_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-567742/mri/t_sub-567742_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-567742/mri/t_sub-567742_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-567742/mri/wp0sub-567742_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-567742/report/cat_sub-567742_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-567742/report/catreport_sub-567742_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887033/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-567742/label/catROI_sub-567742_acq-standard_T1w.mat (file)
add(ok): sub-567742/label/catROI_sub-567742_acq-standard_T1w.xml (file)
add(ok): sub-567742/mri/it_sub-567742_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-567742/mri/it_sub-567742_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-567742/mri/m0wp1sub-567742_acq-standard_T1w.nii.gz (file)
add(ok): sub-567742/mri/mwp1sub-567742_acq-standard_T1w.nii.gz (file)
add(ok): sub-567742/mri/p0sub-567742_acq-standard_T1w.nii.gz (file)
add(ok): sub-567742/mri/t_sub-567742_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-567742/mri/t_sub-567742_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-567742/mri/wp0sub-567742_acq-standard_T1w.nii.gz (file)
add(ok): sub-567742/report/cat_sub-567742_acq-standard_T1w.mat (file)
add(ok): sub-567742/report/cat_sub-567742_acq-standard_T1w.xml (file)
add(ok): sub-567742/report/catlog_sub-567742_acq-standard_T1w.txt (file)
add(ok): sub-567742/report/catreport_sub-567742_acq-standard_T1w.pdf (file)
add(ok): sub-567742/label/catROI_sub-567742_acq-headmotion1_T1w.mat (file)
add(ok): sub-567742/mri/it_sub-567742_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-567742/mri/it_sub-567742_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-567742/mri/m0wp1sub-567742_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-567742/mri/mwp1sub-567742_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-567742/mri/p0sub-567742_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-567742/mri/t_sub-567742_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-567742/mri/t_sub-567742_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-567742/mri/wp0sub-567742_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-567742/report/cat_sub-567742_acq-headmotion1_T1w.mat (file)
add(ok): sub-567742/report/catreport_sub-567742_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:37:25 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:37:26 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887033/ds/sub-567742/sub-567742_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-567742/sub-567742_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 66s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
77s
SPM preprocessing 1 (estimate 2): 57s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 16s
Update Skull-Stripping 44s
Update probability maps 9s
89s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 7s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
104s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 19s
Ventricle detection 19s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 70s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
135s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 20s
ROI estimation of 'anatomy3' atlas 31s
ROI estimation of 'julichbrain' atlas 50s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 45s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 92s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 124s
Write results 127s
499s
Quality check 15s
/var/lib/condor/execute/dir_1887033/ds/sub-567742/report/catreport_sub-567742_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 36 second(s).
Image Quality Rating (IQR): 86.95% (B+)
GM volume (GMV): 50.13% (737.43 / 1471.01 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887033/ds/sub-567742/mri
Reports are saved in /var/lib/condor/execute/dir_1887033/ds/sub-567742/report
Labels are saved in /var/lib/condor/execute/dir_1887033/ds/sub-567742/label
------------------------------------------------------------------------
22-Oct-2025 02:03:05 - Done 'CAT12: Segmentation'
22-Oct-2025 02:03:05 - Done
Bye for now...
get(ok): sourcedata/raw/sub-567742/anat/sub-567742_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-567742/label/catROI_sub-567742_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-567742/label/catROI_sub-567742_acq-standard_T1w.mat (file)
unlock(ok): sub-567742/mri/it_sub-567742_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-567742/mri/it_sub-567742_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-567742/mri/it_sub-567742_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-567742/mri/it_sub-567742_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-567742/mri/m0wp1sub-567742_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-567742/mri/m0wp1sub-567742_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-567742/mri/mwp1sub-567742_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-567742/mri/mwp1sub-567742_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-567742/mri/p0sub-567742_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-567742/mri/p0sub-567742_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-567742/mri/t_sub-567742_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-567742/mri/t_sub-567742_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-567742/mri/t_sub-567742_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-567742/mri/t_sub-567742_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-567742/mri/wp0sub-567742_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-567742/mri/wp0sub-567742_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-567742/report/cat_sub-567742_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-567742/report/cat_sub-567742_acq-standard_T1w.mat (file)
unlock(ok): sub-567742/report/catreport_sub-567742_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-567742/report/catreport_sub-567742_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887033/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-567742/label/catROI_sub-567742_acq-headmotion2_T1w.mat (file)
add(ok): sub-567742/label/catROI_sub-567742_acq-headmotion2_T1w.xml (file)
add(ok): sub-567742/mri/it_sub-567742_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-567742/mri/it_sub-567742_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-567742/mri/m0wp1sub-567742_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-567742/mri/mwp1sub-567742_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-567742/mri/p0sub-567742_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-567742/mri/t_sub-567742_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-567742/mri/t_sub-567742_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-567742/mri/wp0sub-567742_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-567742/report/cat_sub-567742_acq-headmotion2_T1w.mat (file)
add(ok): sub-567742/report/cat_sub-567742_acq-headmotion2_T1w.xml (file)
add(ok): sub-567742/report/catlog_sub-567742_acq-headmotion2_T1w.txt (file)
add(ok): sub-567742/report/catreport_sub-567742_acq-headmotion2_T1w.pdf (file)
add(ok): sub-567742/label/catROI_sub-567742_acq-headmotion1_T1w.mat (file)
add(ok): sub-567742/label/catROI_sub-567742_acq-standard_T1w.mat (file)
add(ok): sub-567742/mri/it_sub-567742_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-567742/mri/it_sub-567742_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-567742/mri/it_sub-567742_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-567742/mri/it_sub-567742_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-567742/mri/m0wp1sub-567742_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-567742/mri/m0wp1sub-567742_acq-standard_T1w.nii.gz (file)
add(ok): sub-567742/mri/mwp1sub-567742_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-567742/mri/mwp1sub-567742_acq-standard_T1w.nii.gz (file)
add(ok): sub-567742/mri/p0sub-567742_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-567742/mri/p0sub-567742_acq-standard_T1w.nii.gz (file)
add(ok): sub-567742/mri/t_sub-567742_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-567742/mri/t_sub-567742_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-567742/mri/t_sub-567742_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-567742/mri/t_sub-567742_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-567742/mri/wp0sub-567742_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-567742/mri/wp0sub-567742_acq-standard_T1w.nii.gz (file)
add(ok): sub-567742/report/cat_sub-567742_acq-headmotion1_T1w.mat (file)
add(ok): sub-567742/report/cat_sub-567742_acq-standard_T1w.mat (file)
add(ok): sub-567742/report/catreport_sub-567742_acq-headmotion1_T1w.pdf (file)
add(ok): sub-567742/report/catreport_sub-567742_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-567742/label/catROI_sub-567742_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/label/catROI_sub-567742_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/label/catROI_sub-567742_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/it_sub-567742_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/it_sub-567742_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/it_sub-567742_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/it_sub-567742_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/it_sub-567742_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/it_sub-567742_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/m0wp1sub-567742_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/m0wp1sub-567742_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/m0wp1sub-567742_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/mwp1sub-567742_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/mwp1sub-567742_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/mwp1sub-567742_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/p0sub-567742_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/p0sub-567742_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/p0sub-567742_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/t_sub-567742_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/t_sub-567742_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/t_sub-567742_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/t_sub-567742_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/t_sub-567742_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/t_sub-567742_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/wp0sub-567742_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/wp0sub-567742_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-567742/mri/wp0sub-567742_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-567742/report/cat_sub-567742_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/report/cat_sub-567742_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/report/cat_sub-567742_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-567742/report/catreport_sub-567742_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-567742/report/catreport_sub-567742_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-567742/report/catreport_sub-567742_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000081 seconds
flock: executing git
SUCCESS
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