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ds004173-catqc/logs/10070989.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1887022/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887022/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887022/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:43 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:43 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887022/ds/sub-593354/sub-593354_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-593354/sub-593354_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 62s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
44s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
10s
Use initial fine affine registration. 68s
SPM preprocessing 1 (estimate 2): 62s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 9s
86s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 11s
110s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
93s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 15s
Ventricle detection 13s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 63s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
114s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 31s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 39s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 17s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 42s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 84s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 134s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 156s
Write results 158s
744s
Quality check 14s
/var/lib/condor/execute/dir_1887022/ds/sub-593354/report/catreport_sub-593354_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 51 second(s).
Image Quality Rating (IQR): 83.93% (B)
GM volume (GMV): 43.88% (545.46 / 1243.17 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887022/ds/sub-593354/mri
Reports are saved in /var/lib/condor/execute/dir_1887022/ds/sub-593354/report
Labels are saved in /var/lib/condor/execute/dir_1887022/ds/sub-593354/label
------------------------------------------------------------------------
22-Oct-2025 01:09:36 - Done 'CAT12: Segmentation'
22-Oct-2025 01:09:36 - Done
Bye for now...
get(ok): sourcedata/raw/sub-593354/anat/sub-593354_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887022/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887022/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-593354/label/catROI_sub-593354_acq-headmotion2_T1w.mat (file)
add(ok): sub-593354/label/catROI_sub-593354_acq-headmotion2_T1w.xml (file)
add(ok): sub-593354/mri/it_sub-593354_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-593354/mri/it_sub-593354_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-593354/mri/m0wp1sub-593354_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-593354/mri/mwp1sub-593354_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-593354/mri/p0sub-593354_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-593354/mri/t_sub-593354_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-593354/mri/t_sub-593354_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-593354/mri/wp0sub-593354_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-593354/report/cat_sub-593354_acq-headmotion2_T1w.mat (file)
add(ok): sub-593354/report/cat_sub-593354_acq-headmotion2_T1w.xml (file)
add(ok): sub-593354/report/catlog_sub-593354_acq-headmotion2_T1w.txt (file)
add(ok): sub-593354/report/catreport_sub-593354_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:10:20 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:10:21 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887022/ds/sub-593354/sub-593354_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-593354/sub-593354_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 66s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
8s
Use initial fine affine registration. 61s
SPM preprocessing 1 (estimate 2): 50s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 9s
86s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 6s
103s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
93s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 15s
Ventricle detection 15s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 53s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
107s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
8s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 34s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 25s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 32s
ROI estimation of 'anatomy3' atlas 46s
ROI estimation of 'julichbrain' atlas 80s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 131s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 157s
Write results 160s
673s
Quality check 14s
/var/lib/condor/execute/dir_1887022/ds/sub-593354/report/catreport_sub-593354_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 11 second(s).
Image Quality Rating (IQR): 87.00% (B+)
GM volume (GMV): 46.20% (581.86 / 1259.51 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887022/ds/sub-593354/mri
Reports are saved in /var/lib/condor/execute/dir_1887022/ds/sub-593354/report
Labels are saved in /var/lib/condor/execute/dir_1887022/ds/sub-593354/label
------------------------------------------------------------------------
22-Oct-2025 01:37:34 - Done 'CAT12: Segmentation'
22-Oct-2025 01:37:34 - Done
Bye for now...
get(ok): sourcedata/raw/sub-593354/anat/sub-593354_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-593354/label/catROI_sub-593354_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-593354/mri/it_sub-593354_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-593354/mri/it_sub-593354_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-593354/mri/m0wp1sub-593354_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-593354/mri/mwp1sub-593354_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-593354/mri/p0sub-593354_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-593354/mri/t_sub-593354_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-593354/mri/t_sub-593354_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-593354/mri/wp0sub-593354_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-593354/report/cat_sub-593354_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-593354/report/catreport_sub-593354_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887022/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-593354/label/catROI_sub-593354_acq-standard_T1w.mat (file)
add(ok): sub-593354/label/catROI_sub-593354_acq-standard_T1w.xml (file)
add(ok): sub-593354/mri/it_sub-593354_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-593354/mri/it_sub-593354_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-593354/mri/m0wp1sub-593354_acq-standard_T1w.nii.gz (file)
add(ok): sub-593354/mri/mwp1sub-593354_acq-standard_T1w.nii.gz (file)
add(ok): sub-593354/mri/p0sub-593354_acq-standard_T1w.nii.gz (file)
add(ok): sub-593354/mri/t_sub-593354_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-593354/mri/t_sub-593354_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-593354/mri/wp0sub-593354_acq-standard_T1w.nii.gz (file)
add(ok): sub-593354/report/cat_sub-593354_acq-standard_T1w.mat (file)
add(ok): sub-593354/report/cat_sub-593354_acq-standard_T1w.xml (file)
add(ok): sub-593354/report/catlog_sub-593354_acq-standard_T1w.txt (file)
add(ok): sub-593354/report/catreport_sub-593354_acq-standard_T1w.pdf (file)
add(ok): sub-593354/label/catROI_sub-593354_acq-headmotion2_T1w.mat (file)
add(ok): sub-593354/mri/it_sub-593354_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-593354/mri/it_sub-593354_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-593354/mri/m0wp1sub-593354_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-593354/mri/mwp1sub-593354_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-593354/mri/p0sub-593354_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-593354/mri/t_sub-593354_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-593354/mri/t_sub-593354_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-593354/mri/wp0sub-593354_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-593354/report/cat_sub-593354_acq-headmotion2_T1w.mat (file)
add(ok): sub-593354/report/catreport_sub-593354_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:38:27 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:38:27 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887022/ds/sub-593354/sub-593354_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-593354/sub-593354_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 65s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
11s
Use initial fine affine registration. 61s
SPM preprocessing 1 (estimate 2): 60s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 42s
Update probability maps 9s
85s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 10s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
92s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 15s
Ventricle detection 14s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 59s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
110s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 22s
ROI estimation of 'anatomy3' atlas 35s
ROI estimation of 'julichbrain' atlas 59s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 104s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 159s
Write results 162s
574s
Quality check 14s
/var/lib/condor/execute/dir_1887022/ds/sub-593354/report/catreport_sub-593354_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 45 second(s).
Image Quality Rating (IQR): 87.71% (B+)
GM volume (GMV): 44.71% (559.59 / 1251.67 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887022/ds/sub-593354/mri
Reports are saved in /var/lib/condor/execute/dir_1887022/ds/sub-593354/report
Labels are saved in /var/lib/condor/execute/dir_1887022/ds/sub-593354/label
------------------------------------------------------------------------
22-Oct-2025 02:04:16 - Done 'CAT12: Segmentation'
22-Oct-2025 02:04:16 - Done
Bye for now...
get(ok): sourcedata/raw/sub-593354/anat/sub-593354_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-593354/label/catROI_sub-593354_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-593354/label/catROI_sub-593354_acq-standard_T1w.mat (file)
unlock(ok): sub-593354/mri/it_sub-593354_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-593354/mri/it_sub-593354_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-593354/mri/it_sub-593354_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-593354/mri/it_sub-593354_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-593354/mri/m0wp1sub-593354_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-593354/mri/m0wp1sub-593354_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-593354/mri/mwp1sub-593354_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-593354/mri/mwp1sub-593354_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-593354/mri/p0sub-593354_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-593354/mri/p0sub-593354_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-593354/mri/t_sub-593354_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-593354/mri/t_sub-593354_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-593354/mri/t_sub-593354_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-593354/mri/t_sub-593354_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-593354/mri/wp0sub-593354_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-593354/mri/wp0sub-593354_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-593354/report/cat_sub-593354_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-593354/report/cat_sub-593354_acq-standard_T1w.mat (file)
unlock(ok): sub-593354/report/catreport_sub-593354_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-593354/report/catreport_sub-593354_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887022/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-593354/label/catROI_sub-593354_acq-headmotion1_T1w.mat (file)
add(ok): sub-593354/label/catROI_sub-593354_acq-headmotion1_T1w.xml (file)
add(ok): sub-593354/mri/it_sub-593354_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-593354/mri/it_sub-593354_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-593354/mri/m0wp1sub-593354_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-593354/mri/mwp1sub-593354_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-593354/mri/p0sub-593354_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-593354/mri/t_sub-593354_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-593354/mri/t_sub-593354_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-593354/mri/wp0sub-593354_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-593354/report/cat_sub-593354_acq-headmotion1_T1w.mat (file)
add(ok): sub-593354/report/cat_sub-593354_acq-headmotion1_T1w.xml (file)
add(ok): sub-593354/report/catlog_sub-593354_acq-headmotion1_T1w.txt (file)
add(ok): sub-593354/report/catreport_sub-593354_acq-headmotion1_T1w.pdf (file)
add(ok): sub-593354/label/catROI_sub-593354_acq-headmotion2_T1w.mat (file)
add(ok): sub-593354/label/catROI_sub-593354_acq-standard_T1w.mat (file)
add(ok): sub-593354/mri/it_sub-593354_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-593354/mri/it_sub-593354_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-593354/mri/it_sub-593354_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-593354/mri/it_sub-593354_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-593354/mri/m0wp1sub-593354_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-593354/mri/m0wp1sub-593354_acq-standard_T1w.nii.gz (file)
add(ok): sub-593354/mri/mwp1sub-593354_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-593354/mri/mwp1sub-593354_acq-standard_T1w.nii.gz (file)
add(ok): sub-593354/mri/p0sub-593354_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-593354/mri/p0sub-593354_acq-standard_T1w.nii.gz (file)
add(ok): sub-593354/mri/t_sub-593354_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-593354/mri/t_sub-593354_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-593354/mri/t_sub-593354_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-593354/mri/t_sub-593354_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-593354/mri/wp0sub-593354_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-593354/mri/wp0sub-593354_acq-standard_T1w.nii.gz (file)
add(ok): sub-593354/report/cat_sub-593354_acq-headmotion2_T1w.mat (file)
add(ok): sub-593354/report/cat_sub-593354_acq-standard_T1w.mat (file)
add(ok): sub-593354/report/catreport_sub-593354_acq-headmotion2_T1w.pdf (file)
add(ok): sub-593354/report/catreport_sub-593354_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-593354/label/catROI_sub-593354_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/label/catROI_sub-593354_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/label/catROI_sub-593354_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/it_sub-593354_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/it_sub-593354_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/it_sub-593354_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/it_sub-593354_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/it_sub-593354_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/it_sub-593354_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/m0wp1sub-593354_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/m0wp1sub-593354_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/m0wp1sub-593354_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/mwp1sub-593354_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/mwp1sub-593354_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/mwp1sub-593354_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/p0sub-593354_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/p0sub-593354_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/p0sub-593354_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/t_sub-593354_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/t_sub-593354_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/t_sub-593354_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/t_sub-593354_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/t_sub-593354_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/t_sub-593354_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/wp0sub-593354_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/wp0sub-593354_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-593354/mri/wp0sub-593354_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-593354/report/cat_sub-593354_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/report/cat_sub-593354_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/report/cat_sub-593354_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-593354/report/catreport_sub-593354_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-593354/report/catreport_sub-593354_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-593354/report/catreport_sub-593354_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001489 seconds
flock: executing git
SUCCESS
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