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ds004173-catqc/logs/10070988.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1887018/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1887018/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887018/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:43 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:43 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887018/ds/sub-152686/sub-152686_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-152686/sub-152686_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 56s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
42s
Correct center-of-mass 6s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
5s
Use initial fine affine registration. 67s
SPM preprocessing 1 (estimate 2): 68s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 44s
Update probability maps 9s
88s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 11s
110s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.08) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
95s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 65s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
123s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
8s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 49s
ROI estimation of 'lpba40' atlas 18s
ROI estimation of 'hammers' atlas 47s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 63s
ROI estimation of 'julichbrain' atlas 84s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 131s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 117s
Write results 120s
743s
Quality check 13s
/var/lib/condor/execute/dir_1887018/ds/sub-152686/report/catreport_sub-152686_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 29 minute(s) and 13 second(s).
Image Quality Rating (IQR): 88.03% (B+)
GM volume (GMV): 44.80% (637.09 / 1422.10 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887018/ds/sub-152686/mri
Reports are saved in /var/lib/condor/execute/dir_1887018/ds/sub-152686/report
Labels are saved in /var/lib/condor/execute/dir_1887018/ds/sub-152686/label
------------------------------------------------------------------------
22-Oct-2025 01:09:59 - Done 'CAT12: Segmentation'
22-Oct-2025 01:09:59 - Done
Bye for now...
get(ok): sourcedata/raw/sub-152686/anat/sub-152686_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1887018/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1887018/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-152686/label/catROI_sub-152686_acq-standard_T1w.mat (file)
add(ok): sub-152686/label/catROI_sub-152686_acq-standard_T1w.xml (file)
add(ok): sub-152686/mri/it_sub-152686_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-152686/mri/it_sub-152686_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-152686/mri/m0wp1sub-152686_acq-standard_T1w.nii.gz (file)
add(ok): sub-152686/mri/mwp1sub-152686_acq-standard_T1w.nii.gz (file)
add(ok): sub-152686/mri/p0sub-152686_acq-standard_T1w.nii.gz (file)
add(ok): sub-152686/mri/t_sub-152686_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-152686/mri/t_sub-152686_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-152686/mri/wp0sub-152686_acq-standard_T1w.nii.gz (file)
add(ok): sub-152686/report/cat_sub-152686_acq-standard_T1w.mat (file)
add(ok): sub-152686/report/cat_sub-152686_acq-standard_T1w.xml (file)
add(ok): sub-152686/report/catlog_sub-152686_acq-standard_T1w.txt (file)
add(ok): sub-152686/report/catreport_sub-152686_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:10:43 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:10:43 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887018/ds/sub-152686/sub-152686_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-152686/sub-152686_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
41s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
5s
Use initial fine affine registration. 65s
SPM preprocessing 1 (estimate 2): 75s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 9s
87s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 11s
108s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.05) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
95s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 18s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 56s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
116s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
11s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 15s
ROI estimation of 'neuromorphometrics' atlas 52s
ROI estimation of 'lpba40' atlas 17s
ROI estimation of 'hammers' atlas 47s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 61s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 54s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 88s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 84s
Write results 86s
659s
Quality check 13s
/var/lib/condor/execute/dir_1887018/ds/sub-152686/report/catreport_sub-152686_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 7 second(s).
Image Quality Rating (IQR): 88.07% (B+)
GM volume (GMV): 45.12% (640.14 / 1418.66 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887018/ds/sub-152686/mri
Reports are saved in /var/lib/condor/execute/dir_1887018/ds/sub-152686/report
Labels are saved in /var/lib/condor/execute/dir_1887018/ds/sub-152686/label
------------------------------------------------------------------------
22-Oct-2025 01:38:53 - Done 'CAT12: Segmentation'
22-Oct-2025 01:38:53 - Done
Bye for now...
get(ok): sourcedata/raw/sub-152686/anat/sub-152686_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-152686/label/catROI_sub-152686_acq-standard_T1w.mat (file)
unlock(ok): sub-152686/mri/it_sub-152686_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-152686/mri/it_sub-152686_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-152686/mri/m0wp1sub-152686_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-152686/mri/mwp1sub-152686_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-152686/mri/p0sub-152686_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-152686/mri/t_sub-152686_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-152686/mri/t_sub-152686_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-152686/mri/wp0sub-152686_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-152686/report/cat_sub-152686_acq-standard_T1w.mat (file)
unlock(ok): sub-152686/report/catreport_sub-152686_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887018/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-152686/label/catROI_sub-152686_acq-headmotion1_T1w.mat (file)
add(ok): sub-152686/label/catROI_sub-152686_acq-headmotion1_T1w.xml (file)
add(ok): sub-152686/mri/it_sub-152686_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-152686/mri/it_sub-152686_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-152686/mri/m0wp1sub-152686_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-152686/mri/mwp1sub-152686_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-152686/mri/p0sub-152686_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-152686/mri/t_sub-152686_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-152686/mri/t_sub-152686_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-152686/mri/wp0sub-152686_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-152686/report/cat_sub-152686_acq-headmotion1_T1w.mat (file)
add(ok): sub-152686/report/cat_sub-152686_acq-headmotion1_T1w.xml (file)
add(ok): sub-152686/report/catlog_sub-152686_acq-headmotion1_T1w.txt (file)
add(ok): sub-152686/report/catreport_sub-152686_acq-headmotion1_T1w.pdf (file)
add(ok): sub-152686/label/catROI_sub-152686_acq-standard_T1w.mat (file)
add(ok): sub-152686/mri/it_sub-152686_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-152686/mri/it_sub-152686_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-152686/mri/m0wp1sub-152686_acq-standard_T1w.nii.gz (file)
add(ok): sub-152686/mri/mwp1sub-152686_acq-standard_T1w.nii.gz (file)
add(ok): sub-152686/mri/p0sub-152686_acq-standard_T1w.nii.gz (file)
add(ok): sub-152686/mri/t_sub-152686_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-152686/mri/t_sub-152686_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-152686/mri/wp0sub-152686_acq-standard_T1w.nii.gz (file)
add(ok): sub-152686/report/cat_sub-152686_acq-standard_T1w.mat (file)
add(ok): sub-152686/report/catreport_sub-152686_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:39:42 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:39:42 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1887018/ds/sub-152686/sub-152686_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-152686/sub-152686_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
42s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
9s
Use initial fine affine registration. 67s
SPM preprocessing 1 (estimate 2): 67s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 9s
87s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 3s
101s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.03) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
96s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 14s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 62s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
119s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
13s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 51s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 37s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 22s
ROI estimation of 'mori' atlas 32s
ROI estimation of 'anatomy3' atlas 51s
ROI estimation of 'julichbrain' atlas 72s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 10s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 28s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 73s
Write results 74s
553s
Quality check 12s
/var/lib/condor/execute/dir_1887018/ds/sub-152686/report/catreport_sub-152686_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 26 second(s).
Image Quality Rating (IQR): 87.72% (B+)
GM volume (GMV): 44.83% (635.54 / 1417.52 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1887018/ds/sub-152686/mri
Reports are saved in /var/lib/condor/execute/dir_1887018/ds/sub-152686/report
Labels are saved in /var/lib/condor/execute/dir_1887018/ds/sub-152686/label
------------------------------------------------------------------------
22-Oct-2025 02:06:11 - Done 'CAT12: Segmentation'
22-Oct-2025 02:06:11 - Done
Bye for now...
get(ok): sourcedata/raw/sub-152686/anat/sub-152686_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-152686/label/catROI_sub-152686_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-152686/label/catROI_sub-152686_acq-standard_T1w.mat (file)
unlock(ok): sub-152686/mri/it_sub-152686_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-152686/mri/it_sub-152686_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-152686/mri/it_sub-152686_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-152686/mri/it_sub-152686_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-152686/mri/m0wp1sub-152686_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-152686/mri/m0wp1sub-152686_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-152686/mri/mwp1sub-152686_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-152686/mri/mwp1sub-152686_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-152686/mri/p0sub-152686_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-152686/mri/p0sub-152686_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-152686/mri/t_sub-152686_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-152686/mri/t_sub-152686_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-152686/mri/t_sub-152686_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-152686/mri/t_sub-152686_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-152686/mri/wp0sub-152686_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-152686/mri/wp0sub-152686_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-152686/report/cat_sub-152686_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-152686/report/cat_sub-152686_acq-standard_T1w.mat (file)
unlock(ok): sub-152686/report/catreport_sub-152686_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-152686/report/catreport_sub-152686_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1887018/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-152686/label/catROI_sub-152686_acq-headmotion2_T1w.mat (file)
add(ok): sub-152686/label/catROI_sub-152686_acq-headmotion2_T1w.xml (file)
add(ok): sub-152686/mri/it_sub-152686_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-152686/mri/it_sub-152686_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-152686/mri/m0wp1sub-152686_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-152686/mri/mwp1sub-152686_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-152686/mri/p0sub-152686_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-152686/mri/t_sub-152686_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-152686/mri/t_sub-152686_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-152686/mri/wp0sub-152686_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-152686/report/cat_sub-152686_acq-headmotion2_T1w.mat (file)
add(ok): sub-152686/report/cat_sub-152686_acq-headmotion2_T1w.xml (file)
add(ok): sub-152686/report/catlog_sub-152686_acq-headmotion2_T1w.txt (file)
add(ok): sub-152686/report/catreport_sub-152686_acq-headmotion2_T1w.pdf (file)
add(ok): sub-152686/label/catROI_sub-152686_acq-headmotion1_T1w.mat (file)
add(ok): sub-152686/label/catROI_sub-152686_acq-standard_T1w.mat (file)
add(ok): sub-152686/mri/it_sub-152686_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-152686/mri/it_sub-152686_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-152686/mri/it_sub-152686_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-152686/mri/it_sub-152686_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-152686/mri/m0wp1sub-152686_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-152686/mri/m0wp1sub-152686_acq-standard_T1w.nii.gz (file)
add(ok): sub-152686/mri/mwp1sub-152686_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-152686/mri/mwp1sub-152686_acq-standard_T1w.nii.gz (file)
add(ok): sub-152686/mri/p0sub-152686_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-152686/mri/p0sub-152686_acq-standard_T1w.nii.gz (file)
add(ok): sub-152686/mri/t_sub-152686_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-152686/mri/t_sub-152686_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-152686/mri/t_sub-152686_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-152686/mri/t_sub-152686_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-152686/mri/wp0sub-152686_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-152686/mri/wp0sub-152686_acq-standard_T1w.nii.gz (file)
add(ok): sub-152686/report/cat_sub-152686_acq-headmotion1_T1w.mat (file)
add(ok): sub-152686/report/cat_sub-152686_acq-standard_T1w.mat (file)
add(ok): sub-152686/report/catreport_sub-152686_acq-headmotion1_T1w.pdf (file)
add(ok): sub-152686/report/catreport_sub-152686_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-152686/label/catROI_sub-152686_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/label/catROI_sub-152686_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/label/catROI_sub-152686_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/it_sub-152686_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/it_sub-152686_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/it_sub-152686_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/it_sub-152686_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/it_sub-152686_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/it_sub-152686_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/m0wp1sub-152686_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/m0wp1sub-152686_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/m0wp1sub-152686_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/mwp1sub-152686_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/mwp1sub-152686_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/mwp1sub-152686_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/p0sub-152686_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/p0sub-152686_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/p0sub-152686_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/t_sub-152686_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/t_sub-152686_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/t_sub-152686_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/t_sub-152686_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/t_sub-152686_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/t_sub-152686_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/wp0sub-152686_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/wp0sub-152686_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-152686/mri/wp0sub-152686_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-152686/report/cat_sub-152686_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/report/cat_sub-152686_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/report/cat_sub-152686_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-152686/report/catreport_sub-152686_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-152686/report/catreport_sub-152686_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-152686/report/catreport_sub-152686_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000030 seconds
flock: executing git
SUCCESS
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