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ds004173-catqc/logs/10070986.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1886995/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1886995/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1886995/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:43 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:43 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1886995/ds/sub-561646/sub-561646_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-561646/sub-561646_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 59s
Affine preprocessing (APP)
Initialize 8s
Estimate background 6s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
11s
Use initial fine affine registration. 58s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 9s
83s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 4s
100s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 12s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 23s
86s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 13s
Ventricle detection 12s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 45s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 3s
92s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 27s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
4s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 31s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 20s
ROI estimation of 'anatomy3' atlas 53s
ROI estimation of 'julichbrain' atlas 81s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 134s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 201s
Write results 206s
705s
Quality check 16s
/var/lib/condor/execute/dir_1886995/ds/sub-561646/report/catreport_sub-561646_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 44 second(s).
Image Quality Rating (IQR): 88.04% (B+)
GM volume (GMV): 47.15% (540.11 / 1145.51 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1886995/ds/sub-561646/mri
Reports are saved in /var/lib/condor/execute/dir_1886995/ds/sub-561646/report
Labels are saved in /var/lib/condor/execute/dir_1886995/ds/sub-561646/label
------------------------------------------------------------------------
22-Oct-2025 01:08:30 - Done 'CAT12: Segmentation'
22-Oct-2025 01:08:30 - Done
Bye for now...
get(ok): sourcedata/raw/sub-561646/anat/sub-561646_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1886995/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1886995/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-561646/label/catROI_sub-561646_acq-standard_T1w.mat (file)
add(ok): sub-561646/label/catROI_sub-561646_acq-standard_T1w.xml (file)
add(ok): sub-561646/mri/it_sub-561646_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-561646/mri/it_sub-561646_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-561646/mri/m0wp1sub-561646_acq-standard_T1w.nii.gz (file)
add(ok): sub-561646/mri/mwp1sub-561646_acq-standard_T1w.nii.gz (file)
add(ok): sub-561646/mri/p0sub-561646_acq-standard_T1w.nii.gz (file)
add(ok): sub-561646/mri/t_sub-561646_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-561646/mri/t_sub-561646_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-561646/mri/wp0sub-561646_acq-standard_T1w.nii.gz (file)
add(ok): sub-561646/report/cat_sub-561646_acq-standard_T1w.mat (file)
add(ok): sub-561646/report/cat_sub-561646_acq-standard_T1w.xml (file)
add(ok): sub-561646/report/catlog_sub-561646_acq-standard_T1w.txt (file)
add(ok): sub-561646/report/catreport_sub-561646_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:09:31 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:09:31 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1886995/ds/sub-561646/sub-561646_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-561646/sub-561646_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 8s
Estimate background 6s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
40s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
11s
Use initial fine affine registration. 60s
SPM preprocessing 1 (estimate 2): 65s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 9s
83s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 7s
103s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 11s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 24s
87s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 13s
Ventricle detection 16s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 50s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 3s
101s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 27s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 18s
ROI estimation of 'anatomy3' atlas 26s
ROI estimation of 'julichbrain' atlas 49s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 59s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 131s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 195s
Write results 200s
614s
Quality check 16s
/var/lib/condor/execute/dir_1886995/ds/sub-561646/report/catreport_sub-561646_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 30 second(s).
Image Quality Rating (IQR): 86.69% (B+)
GM volume (GMV): 46.25% (529.33 / 1144.61 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1886995/ds/sub-561646/mri
Reports are saved in /var/lib/condor/execute/dir_1886995/ds/sub-561646/report
Labels are saved in /var/lib/condor/execute/dir_1886995/ds/sub-561646/label
------------------------------------------------------------------------
22-Oct-2025 01:36:04 - Done 'CAT12: Segmentation'
22-Oct-2025 01:36:04 - Done
Bye for now...
get(ok): sourcedata/raw/sub-561646/anat/sub-561646_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-561646/label/catROI_sub-561646_acq-standard_T1w.mat (file)
unlock(ok): sub-561646/mri/it_sub-561646_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-561646/mri/it_sub-561646_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-561646/mri/m0wp1sub-561646_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-561646/mri/mwp1sub-561646_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-561646/mri/p0sub-561646_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-561646/mri/t_sub-561646_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-561646/mri/t_sub-561646_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-561646/mri/wp0sub-561646_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-561646/report/cat_sub-561646_acq-standard_T1w.mat (file)
unlock(ok): sub-561646/report/catreport_sub-561646_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1886995/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-561646/label/catROI_sub-561646_acq-headmotion1_T1w.mat (file)
add(ok): sub-561646/label/catROI_sub-561646_acq-headmotion1_T1w.xml (file)
add(ok): sub-561646/mri/it_sub-561646_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-561646/mri/it_sub-561646_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-561646/mri/m0wp1sub-561646_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-561646/mri/mwp1sub-561646_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-561646/mri/p0sub-561646_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-561646/mri/t_sub-561646_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-561646/mri/t_sub-561646_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-561646/mri/wp0sub-561646_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-561646/report/cat_sub-561646_acq-headmotion1_T1w.mat (file)
add(ok): sub-561646/report/cat_sub-561646_acq-headmotion1_T1w.xml (file)
add(ok): sub-561646/report/catlog_sub-561646_acq-headmotion1_T1w.txt (file)
add(ok): sub-561646/report/catreport_sub-561646_acq-headmotion1_T1w.pdf (file)
add(ok): sub-561646/label/catROI_sub-561646_acq-standard_T1w.mat (file)
add(ok): sub-561646/mri/it_sub-561646_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-561646/mri/it_sub-561646_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-561646/mri/m0wp1sub-561646_acq-standard_T1w.nii.gz (file)
add(ok): sub-561646/mri/mwp1sub-561646_acq-standard_T1w.nii.gz (file)
add(ok): sub-561646/mri/p0sub-561646_acq-standard_T1w.nii.gz (file)
add(ok): sub-561646/mri/t_sub-561646_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-561646/mri/t_sub-561646_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-561646/mri/wp0sub-561646_acq-standard_T1w.nii.gz (file)
add(ok): sub-561646/report/cat_sub-561646_acq-standard_T1w.mat (file)
add(ok): sub-561646/report/catreport_sub-561646_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:37:21 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:37:22 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1886995/ds/sub-561646/sub-561646_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-561646/sub-561646_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 59s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
43s
Correct center-of-mass 9s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
13s
Use initial fine affine registration. 62s
SPM preprocessing 1 (estimate 2): 63s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 13s
Update Skull-Stripping 41s
Update probability maps 8s
83s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 13s
Fast Optimized Shooting registration 8s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.14) 11s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
88s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 14s
Ventricle detection 11s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 49s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 3s
95s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 27s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.690.08,0.980.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 30s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 14s
ROI estimation of 'mori' atlas 18s
ROI estimation of 'anatomy3' atlas 31s
ROI estimation of 'julichbrain' atlas 46s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 48s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 101s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 165s
Write results 170s
546s
Quality check 15s
/var/lib/condor/execute/dir_1886995/ds/sub-561646/report/catreport_sub-561646_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 7 second(s).
Image Quality Rating (IQR): 83.55% (B)
GM volume (GMV): 45.38% (508.64 / 1120.95 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1886995/ds/sub-561646/mri
Reports are saved in /var/lib/condor/execute/dir_1886995/ds/sub-561646/report
Labels are saved in /var/lib/condor/execute/dir_1886995/ds/sub-561646/label
------------------------------------------------------------------------
22-Oct-2025 02:03:33 - Done 'CAT12: Segmentation'
22-Oct-2025 02:03:33 - Done
Bye for now...
get(ok): sourcedata/raw/sub-561646/anat/sub-561646_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-561646/label/catROI_sub-561646_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-561646/label/catROI_sub-561646_acq-standard_T1w.mat (file)
unlock(ok): sub-561646/mri/it_sub-561646_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-561646/mri/it_sub-561646_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-561646/mri/it_sub-561646_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-561646/mri/it_sub-561646_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-561646/mri/m0wp1sub-561646_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-561646/mri/m0wp1sub-561646_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-561646/mri/mwp1sub-561646_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-561646/mri/mwp1sub-561646_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-561646/mri/p0sub-561646_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-561646/mri/p0sub-561646_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-561646/mri/t_sub-561646_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-561646/mri/t_sub-561646_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-561646/mri/t_sub-561646_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-561646/mri/t_sub-561646_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-561646/mri/wp0sub-561646_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-561646/mri/wp0sub-561646_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-561646/report/cat_sub-561646_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-561646/report/cat_sub-561646_acq-standard_T1w.mat (file)
unlock(ok): sub-561646/report/catreport_sub-561646_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-561646/report/catreport_sub-561646_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1886995/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-561646/label/catROI_sub-561646_acq-headmotion2_T1w.mat (file)
add(ok): sub-561646/label/catROI_sub-561646_acq-headmotion2_T1w.xml (file)
add(ok): sub-561646/mri/it_sub-561646_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-561646/mri/it_sub-561646_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-561646/mri/m0wp1sub-561646_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-561646/mri/mwp1sub-561646_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-561646/mri/p0sub-561646_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-561646/mri/t_sub-561646_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-561646/mri/t_sub-561646_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-561646/mri/wp0sub-561646_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-561646/report/cat_sub-561646_acq-headmotion2_T1w.mat (file)
add(ok): sub-561646/report/cat_sub-561646_acq-headmotion2_T1w.xml (file)
add(ok): sub-561646/report/catlog_sub-561646_acq-headmotion2_T1w.txt (file)
add(ok): sub-561646/report/catreport_sub-561646_acq-headmotion2_T1w.pdf (file)
add(ok): sub-561646/label/catROI_sub-561646_acq-headmotion1_T1w.mat (file)
add(ok): sub-561646/label/catROI_sub-561646_acq-standard_T1w.mat (file)
add(ok): sub-561646/mri/it_sub-561646_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-561646/mri/it_sub-561646_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-561646/mri/it_sub-561646_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-561646/mri/it_sub-561646_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-561646/mri/m0wp1sub-561646_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-561646/mri/m0wp1sub-561646_acq-standard_T1w.nii.gz (file)
add(ok): sub-561646/mri/mwp1sub-561646_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-561646/mri/mwp1sub-561646_acq-standard_T1w.nii.gz (file)
add(ok): sub-561646/mri/p0sub-561646_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-561646/mri/p0sub-561646_acq-standard_T1w.nii.gz (file)
add(ok): sub-561646/mri/t_sub-561646_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-561646/mri/t_sub-561646_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-561646/mri/t_sub-561646_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-561646/mri/t_sub-561646_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-561646/mri/wp0sub-561646_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-561646/mri/wp0sub-561646_acq-standard_T1w.nii.gz (file)
add(ok): sub-561646/report/cat_sub-561646_acq-headmotion1_T1w.mat (file)
add(ok): sub-561646/report/cat_sub-561646_acq-standard_T1w.mat (file)
add(ok): sub-561646/report/catreport_sub-561646_acq-headmotion1_T1w.pdf (file)
add(ok): sub-561646/report/catreport_sub-561646_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-561646/label/catROI_sub-561646_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/label/catROI_sub-561646_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/label/catROI_sub-561646_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/it_sub-561646_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/it_sub-561646_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/it_sub-561646_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/it_sub-561646_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/it_sub-561646_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/it_sub-561646_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/m0wp1sub-561646_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/m0wp1sub-561646_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/m0wp1sub-561646_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/mwp1sub-561646_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/mwp1sub-561646_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/mwp1sub-561646_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/p0sub-561646_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/p0sub-561646_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/p0sub-561646_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/t_sub-561646_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/t_sub-561646_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/t_sub-561646_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/t_sub-561646_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/t_sub-561646_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/t_sub-561646_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/wp0sub-561646_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/wp0sub-561646_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-561646/mri/wp0sub-561646_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-561646/report/cat_sub-561646_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/report/cat_sub-561646_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/report/cat_sub-561646_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-561646/report/catreport_sub-561646_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-561646/report/catreport_sub-561646_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-561646/report/catreport_sub-561646_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001341 seconds
flock: executing git
SUCCESS
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