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ds004173-catqc/logs/10070981.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1886958/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1886958/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1886958/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1886958/ds/sub-089207/sub-089207_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-089207/sub-089207_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 65s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
45s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
91s
SPM preprocessing 1 (estimate 2): 73s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 17s
Update Skull-Stripping 47s
Update probability maps 9s
94s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 10s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.13) 16s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
103s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 19s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.25) 86s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
155s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 38s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.670.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
5s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 46s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 33s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 30s
ROI estimation of 'anatomy3' atlas 43s
ROI estimation of 'julichbrain' atlas 58s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 44s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 77s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 94s
Write results 97s
528s
Quality check 16s
/var/lib/condor/execute/dir_1886958/ds/sub-089207/report/catreport_sub-089207_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 36 second(s).
Image Quality Rating (IQR): 86.46% (B)
GM volume (GMV): 44.36% (750.98 / 1692.93 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1886958/ds/sub-089207/mri
Reports are saved in /var/lib/condor/execute/dir_1886958/ds/sub-089207/report
Labels are saved in /var/lib/condor/execute/dir_1886958/ds/sub-089207/label
------------------------------------------------------------------------
22-Oct-2025 01:08:21 - Done 'CAT12: Segmentation'
22-Oct-2025 01:08:21 - Done
Bye for now...
get(ok): sourcedata/raw/sub-089207/anat/sub-089207_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1886958/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1886958/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-089207/label/catROI_sub-089207_acq-headmotion1_T1w.mat (file)
add(ok): sub-089207/label/catROI_sub-089207_acq-headmotion1_T1w.xml (file)
add(ok): sub-089207/mri/it_sub-089207_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-089207/mri/it_sub-089207_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-089207/mri/m0wp1sub-089207_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-089207/mri/mwp1sub-089207_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-089207/mri/p0sub-089207_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-089207/mri/t_sub-089207_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-089207/mri/t_sub-089207_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-089207/mri/wp0sub-089207_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-089207/report/cat_sub-089207_acq-headmotion1_T1w.mat (file)
add(ok): sub-089207/report/cat_sub-089207_acq-headmotion1_T1w.xml (file)
add(ok): sub-089207/report/catlog_sub-089207_acq-headmotion1_T1w.txt (file)
add(ok): sub-089207/report/catreport_sub-089207_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:09:05 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:09:05 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1886958/ds/sub-089207/sub-089207_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-089207/sub-089207_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 68s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
44s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
87s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 17s
Update Skull-Stripping 47s
Update probability maps 9s
94s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 22s
Fast Optimized Shooting registration 11s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.12) 17s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
106s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 20s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.23) 93s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
164s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 37s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 27s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 22s
ROI estimation of 'anatomy3' atlas 35s
ROI estimation of 'julichbrain' atlas 48s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 17s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 36s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 61s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 87s
Write results 90s
438s
Quality check 15s
/var/lib/condor/execute/dir_1886958/ds/sub-089207/report/catreport_sub-089207_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 4 second(s).
Image Quality Rating (IQR): 87.75% (B+)
GM volume (GMV): 45.44% (766.95 / 1688.00 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1886958/ds/sub-089207/mri
Reports are saved in /var/lib/condor/execute/dir_1886958/ds/sub-089207/report
Labels are saved in /var/lib/condor/execute/dir_1886958/ds/sub-089207/label
------------------------------------------------------------------------
22-Oct-2025 01:35:12 - Done 'CAT12: Segmentation'
22-Oct-2025 01:35:12 - Done
Bye for now...
get(ok): sourcedata/raw/sub-089207/anat/sub-089207_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-089207/label/catROI_sub-089207_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-089207/mri/it_sub-089207_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-089207/mri/it_sub-089207_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-089207/mri/m0wp1sub-089207_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-089207/mri/mwp1sub-089207_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-089207/mri/p0sub-089207_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-089207/mri/t_sub-089207_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-089207/mri/t_sub-089207_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-089207/mri/wp0sub-089207_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-089207/report/cat_sub-089207_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-089207/report/catreport_sub-089207_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1886958/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-089207/label/catROI_sub-089207_acq-standard_T1w.mat (file)
add(ok): sub-089207/label/catROI_sub-089207_acq-standard_T1w.xml (file)
add(ok): sub-089207/mri/it_sub-089207_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-089207/mri/it_sub-089207_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-089207/mri/m0wp1sub-089207_acq-standard_T1w.nii.gz (file)
add(ok): sub-089207/mri/mwp1sub-089207_acq-standard_T1w.nii.gz (file)
add(ok): sub-089207/mri/p0sub-089207_acq-standard_T1w.nii.gz (file)
add(ok): sub-089207/mri/t_sub-089207_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-089207/mri/t_sub-089207_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-089207/mri/wp0sub-089207_acq-standard_T1w.nii.gz (file)
add(ok): sub-089207/report/cat_sub-089207_acq-standard_T1w.mat (file)
add(ok): sub-089207/report/cat_sub-089207_acq-standard_T1w.xml (file)
add(ok): sub-089207/report/catlog_sub-089207_acq-standard_T1w.txt (file)
add(ok): sub-089207/report/catreport_sub-089207_acq-standard_T1w.pdf (file)
add(ok): sub-089207/label/catROI_sub-089207_acq-headmotion1_T1w.mat (file)
add(ok): sub-089207/mri/it_sub-089207_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-089207/mri/it_sub-089207_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-089207/mri/m0wp1sub-089207_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-089207/mri/mwp1sub-089207_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-089207/mri/p0sub-089207_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-089207/mri/t_sub-089207_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-089207/mri/t_sub-089207_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-089207/mri/wp0sub-089207_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-089207/report/cat_sub-089207_acq-headmotion1_T1w.mat (file)
add(ok): sub-089207/report/catreport_sub-089207_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:35:55 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:35:55 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1886958/ds/sub-089207/sub-089207_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-089207/sub-089207_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 74s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
45s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
88s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 21s
Update Segmentation 17s
Update Skull-Stripping 46s
Update probability maps 9s
93s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 7s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.16) 16s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
107s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 21s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.26) 71s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
142s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 36s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 34s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 17s
ROI estimation of 'anatomy3' atlas 24s
ROI estimation of 'julichbrain' atlas 31s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 13s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 26s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 58s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 78s
Write results 80s
361s
Quality check 15s
/var/lib/condor/execute/dir_1886958/ds/sub-089207/report/catreport_sub-089207_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 23 second(s).
Image Quality Rating (IQR): 86.41% (B)
GM volume (GMV): 43.90% (746.72 / 1701.02 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1886958/ds/sub-089207/mri
Reports are saved in /var/lib/condor/execute/dir_1886958/ds/sub-089207/report
Labels are saved in /var/lib/condor/execute/dir_1886958/ds/sub-089207/label
------------------------------------------------------------------------
22-Oct-2025 02:00:21 - Done 'CAT12: Segmentation'
22-Oct-2025 02:00:21 - Done
Bye for now...
get(ok): sourcedata/raw/sub-089207/anat/sub-089207_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-089207/label/catROI_sub-089207_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-089207/label/catROI_sub-089207_acq-standard_T1w.mat (file)
unlock(ok): sub-089207/mri/it_sub-089207_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-089207/mri/it_sub-089207_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-089207/mri/it_sub-089207_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-089207/mri/it_sub-089207_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-089207/mri/m0wp1sub-089207_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-089207/mri/m0wp1sub-089207_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-089207/mri/mwp1sub-089207_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-089207/mri/mwp1sub-089207_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-089207/mri/p0sub-089207_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-089207/mri/p0sub-089207_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-089207/mri/t_sub-089207_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-089207/mri/t_sub-089207_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-089207/mri/t_sub-089207_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-089207/mri/t_sub-089207_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-089207/mri/wp0sub-089207_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-089207/mri/wp0sub-089207_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-089207/report/cat_sub-089207_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-089207/report/cat_sub-089207_acq-standard_T1w.mat (file)
unlock(ok): sub-089207/report/catreport_sub-089207_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-089207/report/catreport_sub-089207_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1886958/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-089207/label/catROI_sub-089207_acq-headmotion2_T1w.mat (file)
add(ok): sub-089207/label/catROI_sub-089207_acq-headmotion2_T1w.xml (file)
add(ok): sub-089207/mri/it_sub-089207_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-089207/mri/it_sub-089207_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-089207/mri/m0wp1sub-089207_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-089207/mri/mwp1sub-089207_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-089207/mri/p0sub-089207_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-089207/mri/t_sub-089207_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-089207/mri/t_sub-089207_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-089207/mri/wp0sub-089207_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-089207/report/cat_sub-089207_acq-headmotion2_T1w.mat (file)
add(ok): sub-089207/report/cat_sub-089207_acq-headmotion2_T1w.xml (file)
add(ok): sub-089207/report/catlog_sub-089207_acq-headmotion2_T1w.txt (file)
add(ok): sub-089207/report/catreport_sub-089207_acq-headmotion2_T1w.pdf (file)
add(ok): sub-089207/label/catROI_sub-089207_acq-headmotion1_T1w.mat (file)
add(ok): sub-089207/label/catROI_sub-089207_acq-standard_T1w.mat (file)
add(ok): sub-089207/mri/it_sub-089207_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-089207/mri/it_sub-089207_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-089207/mri/it_sub-089207_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-089207/mri/it_sub-089207_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-089207/mri/m0wp1sub-089207_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-089207/mri/m0wp1sub-089207_acq-standard_T1w.nii.gz (file)
add(ok): sub-089207/mri/mwp1sub-089207_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-089207/mri/mwp1sub-089207_acq-standard_T1w.nii.gz (file)
add(ok): sub-089207/mri/p0sub-089207_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-089207/mri/p0sub-089207_acq-standard_T1w.nii.gz (file)
add(ok): sub-089207/mri/t_sub-089207_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-089207/mri/t_sub-089207_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-089207/mri/t_sub-089207_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-089207/mri/t_sub-089207_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-089207/mri/wp0sub-089207_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-089207/mri/wp0sub-089207_acq-standard_T1w.nii.gz (file)
add(ok): sub-089207/report/cat_sub-089207_acq-headmotion1_T1w.mat (file)
add(ok): sub-089207/report/cat_sub-089207_acq-standard_T1w.mat (file)
add(ok): sub-089207/report/catreport_sub-089207_acq-headmotion1_T1w.pdf (file)
add(ok): sub-089207/report/catreport_sub-089207_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-089207/label/catROI_sub-089207_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/label/catROI_sub-089207_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/label/catROI_sub-089207_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/it_sub-089207_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/it_sub-089207_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/it_sub-089207_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/it_sub-089207_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/it_sub-089207_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/it_sub-089207_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/m0wp1sub-089207_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/m0wp1sub-089207_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/m0wp1sub-089207_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/mwp1sub-089207_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/mwp1sub-089207_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/mwp1sub-089207_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/p0sub-089207_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/p0sub-089207_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/p0sub-089207_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/t_sub-089207_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/t_sub-089207_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/t_sub-089207_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/t_sub-089207_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/t_sub-089207_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/t_sub-089207_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/wp0sub-089207_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/wp0sub-089207_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-089207/mri/wp0sub-089207_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-089207/report/cat_sub-089207_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/report/cat_sub-089207_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/report/cat_sub-089207_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-089207/report/catreport_sub-089207_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-089207/report/catreport_sub-089207_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-089207/report/catreport_sub-089207_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001414 seconds
flock: executing git
SUCCESS
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