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ds004173-catqc/logs/10070979.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_91079/ds (dataset)
install(ok): /var/lib/condor/execute/dir_91079/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_91079/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:38:53 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:38:53 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_91079/ds/sub-453666/sub-453666_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-453666/sub-453666_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 45s
Affine preprocessing (APP)
Initialize 6s
Estimate background 6s
Initial correction 5s
Refine background 3s
Final correction 4s
Final scaling 4s
33s
Correct center-of-mass 3s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
62s
SPM preprocessing 1 (estimate 2): 42s
SPM preprocessing 2 (write)
Write Segmentation 16s
Update Segmentation 12s
Update Skull-Stripping 34s
Update probability maps 7s
69s
Global intensity correction 13s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 8s
82s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.14) 12s
Estimate local tissue thresholds (WM) 16s
Estimate local tissue thresholds (GM) 19s
Intensity transformation 0s
SANLM denoising after LAS (medium) 22s
77s
ROI segmentation (partitioning)
Atlas -> subject space 6s
Major structures 14s
Ventricle detection 11s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.13) 50s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
97s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 26s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 6s
ROI estimation of 'neuromorphometrics' atlas 23s
ROI estimation of 'lpba40' atlas 7s
ROI estimation of 'hammers' atlas 17s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 3s
ROI estimation of 'ibsr' atlas 5s
ROI estimation of 'aal3' atlas 9s
ROI estimation of 'mori' atlas 11s
ROI estimation of 'anatomy3' atlas 16s
ROI estimation of 'julichbrain' atlas 22s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 3s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 9s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 40s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 54s
Write results 55s
248s
Quality check 11s
/var/lib/condor/execute/dir_91079/ds/sub-453666/report/catreport_sub-453666_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 17 minute(s) and 10 second(s).
Image Quality Rating (IQR): 85.31% (B)
GM volume (GMV): 44.29% (684.39 / 1545.22 ml)
Segmentations are saved in /var/lib/condor/execute/dir_91079/ds/sub-453666/mri
Reports are saved in /var/lib/condor/execute/dir_91079/ds/sub-453666/report
Labels are saved in /var/lib/condor/execute/dir_91079/ds/sub-453666/label
------------------------------------------------------------------------
22-Oct-2025 00:56:05 - Done 'CAT12: Segmentation'
22-Oct-2025 00:56:05 - Done
Bye for now...
get(ok): sourcedata/raw/sub-453666/anat/sub-453666_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_91079/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_91079/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-453666/label/catROI_sub-453666_acq-headmotion2_T1w.mat (file)
add(ok): sub-453666/label/catROI_sub-453666_acq-headmotion2_T1w.xml (file)
add(ok): sub-453666/mri/it_sub-453666_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-453666/mri/it_sub-453666_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-453666/mri/m0wp1sub-453666_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-453666/mri/mwp1sub-453666_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-453666/mri/p0sub-453666_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-453666/mri/t_sub-453666_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-453666/mri/t_sub-453666_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-453666/mri/wp0sub-453666_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-453666/report/cat_sub-453666_acq-headmotion2_T1w.mat (file)
add(ok): sub-453666/report/cat_sub-453666_acq-headmotion2_T1w.xml (file)
add(ok): sub-453666/report/catlog_sub-453666_acq-headmotion2_T1w.txt (file)
add(ok): sub-453666/report/catreport_sub-453666_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:56:38 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:56:38 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_91079/ds/sub-453666/sub-453666_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-453666/sub-453666_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 44s
Affine preprocessing (APP)
Initialize 6s
Estimate background 6s
Initial correction 5s
Refine background 3s
Final correction 4s
Final scaling 4s
33s
Correct center-of-mass 3s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
62s
SPM preprocessing 1 (estimate 2): 42s
SPM preprocessing 2 (write)
Write Segmentation 16s
Update Segmentation 12s
Update Skull-Stripping 35s
Update probability maps 7s
69s
Global intensity correction 13s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 5s
79s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.16) 12s
Estimate local tissue thresholds (WM) 17s
Estimate local tissue thresholds (GM) 20s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
87s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 15s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 57s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
109s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 25s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
5s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 6s
ROI estimation of 'neuromorphometrics' atlas 22s
ROI estimation of 'lpba40' atlas 6s
ROI estimation of 'hammers' atlas 16s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 3s
ROI estimation of 'ibsr' atlas 5s
ROI estimation of 'aal3' atlas 9s
ROI estimation of 'mori' atlas 11s
ROI estimation of 'anatomy3' atlas 16s
ROI estimation of 'julichbrain' atlas 22s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 3s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 9s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 40s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 53s
Write results 54s
244s
Quality check 11s
/var/lib/condor/execute/dir_91079/ds/sub-453666/report/catreport_sub-453666_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 17 minute(s) and 35 second(s).
Image Quality Rating (IQR): 87.64% (B+)
GM volume (GMV): 45.17% (697.28 / 1543.70 ml)
Segmentations are saved in /var/lib/condor/execute/dir_91079/ds/sub-453666/mri
Reports are saved in /var/lib/condor/execute/dir_91079/ds/sub-453666/report
Labels are saved in /var/lib/condor/execute/dir_91079/ds/sub-453666/label
------------------------------------------------------------------------
22-Oct-2025 01:14:15 - Done 'CAT12: Segmentation'
22-Oct-2025 01:14:15 - Done
Bye for now...
get(ok): sourcedata/raw/sub-453666/anat/sub-453666_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-453666/label/catROI_sub-453666_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-453666/mri/it_sub-453666_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-453666/mri/it_sub-453666_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-453666/mri/m0wp1sub-453666_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-453666/mri/mwp1sub-453666_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-453666/mri/p0sub-453666_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-453666/mri/t_sub-453666_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-453666/mri/t_sub-453666_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-453666/mri/wp0sub-453666_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-453666/report/cat_sub-453666_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-453666/report/catreport_sub-453666_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_91079/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-453666/label/catROI_sub-453666_acq-standard_T1w.mat (file)
add(ok): sub-453666/label/catROI_sub-453666_acq-standard_T1w.xml (file)
add(ok): sub-453666/mri/it_sub-453666_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-453666/mri/it_sub-453666_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-453666/mri/m0wp1sub-453666_acq-standard_T1w.nii.gz (file)
add(ok): sub-453666/mri/mwp1sub-453666_acq-standard_T1w.nii.gz (file)
add(ok): sub-453666/mri/p0sub-453666_acq-standard_T1w.nii.gz (file)
add(ok): sub-453666/mri/t_sub-453666_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-453666/mri/t_sub-453666_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-453666/mri/wp0sub-453666_acq-standard_T1w.nii.gz (file)
add(ok): sub-453666/report/cat_sub-453666_acq-standard_T1w.mat (file)
add(ok): sub-453666/report/cat_sub-453666_acq-standard_T1w.xml (file)
add(ok): sub-453666/report/catlog_sub-453666_acq-standard_T1w.txt (file)
add(ok): sub-453666/report/catreport_sub-453666_acq-standard_T1w.pdf (file)
add(ok): sub-453666/label/catROI_sub-453666_acq-headmotion2_T1w.mat (file)
add(ok): sub-453666/mri/it_sub-453666_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-453666/mri/it_sub-453666_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-453666/mri/m0wp1sub-453666_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-453666/mri/mwp1sub-453666_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-453666/mri/p0sub-453666_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-453666/mri/t_sub-453666_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-453666/mri/t_sub-453666_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-453666/mri/wp0sub-453666_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-453666/report/cat_sub-453666_acq-headmotion2_T1w.mat (file)
add(ok): sub-453666/report/catreport_sub-453666_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:14:48 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:14:48 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_91079/ds/sub-453666/sub-453666_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-453666/sub-453666_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 44s
Affine preprocessing (APP)
Initialize 6s
Estimate background 6s
Initial correction 5s
Refine background 3s
Final correction 4s
Final scaling 4s
33s
Correct center-of-mass 3s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
62s
SPM preprocessing 1 (estimate 2): 39s
SPM preprocessing 2 (write)
Write Segmentation 16s
Update Segmentation 12s
Update Skull-Stripping 34s
Update probability maps 7s
69s
Global intensity correction 13s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 5s
79s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.15) 12s
Estimate local tissue thresholds (WM) 16s
Estimate local tissue thresholds (GM) 19s
Intensity transformation 0s
SANLM denoising after LAS (medium) 22s
78s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 13s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 58s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
107s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 26s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
5s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 6s
ROI estimation of 'neuromorphometrics' atlas 22s
ROI estimation of 'lpba40' atlas 6s
ROI estimation of 'hammers' atlas 15s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 3s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 9s
ROI estimation of 'mori' atlas 12s
ROI estimation of 'anatomy3' atlas 17s
ROI estimation of 'julichbrain' atlas 22s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 3s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 9s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 41s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 56s
Write results 57s
250s
Quality check 11s
/var/lib/condor/execute/dir_91079/ds/sub-453666/report/catreport_sub-453666_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 17 minute(s) and 13 second(s).
Image Quality Rating (IQR): 87.15% (B+)
GM volume (GMV): 44.89% (692.51 / 1542.71 ml)
Segmentations are saved in /var/lib/condor/execute/dir_91079/ds/sub-453666/mri
Reports are saved in /var/lib/condor/execute/dir_91079/ds/sub-453666/report
Labels are saved in /var/lib/condor/execute/dir_91079/ds/sub-453666/label
------------------------------------------------------------------------
22-Oct-2025 01:32:03 - Done 'CAT12: Segmentation'
22-Oct-2025 01:32:03 - Done
Bye for now...
get(ok): sourcedata/raw/sub-453666/anat/sub-453666_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-453666/label/catROI_sub-453666_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-453666/label/catROI_sub-453666_acq-standard_T1w.mat (file)
unlock(ok): sub-453666/mri/it_sub-453666_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-453666/mri/it_sub-453666_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-453666/mri/it_sub-453666_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-453666/mri/it_sub-453666_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-453666/mri/m0wp1sub-453666_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-453666/mri/m0wp1sub-453666_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-453666/mri/mwp1sub-453666_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-453666/mri/mwp1sub-453666_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-453666/mri/p0sub-453666_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-453666/mri/p0sub-453666_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-453666/mri/t_sub-453666_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-453666/mri/t_sub-453666_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-453666/mri/t_sub-453666_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-453666/mri/t_sub-453666_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-453666/mri/wp0sub-453666_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-453666/mri/wp0sub-453666_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-453666/report/cat_sub-453666_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-453666/report/cat_sub-453666_acq-standard_T1w.mat (file)
unlock(ok): sub-453666/report/catreport_sub-453666_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-453666/report/catreport_sub-453666_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_91079/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-453666/label/catROI_sub-453666_acq-headmotion1_T1w.mat (file)
add(ok): sub-453666/label/catROI_sub-453666_acq-headmotion1_T1w.xml (file)
add(ok): sub-453666/mri/it_sub-453666_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-453666/mri/it_sub-453666_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-453666/mri/m0wp1sub-453666_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-453666/mri/mwp1sub-453666_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-453666/mri/p0sub-453666_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-453666/mri/t_sub-453666_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-453666/mri/t_sub-453666_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-453666/mri/wp0sub-453666_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-453666/report/cat_sub-453666_acq-headmotion1_T1w.mat (file)
add(ok): sub-453666/report/cat_sub-453666_acq-headmotion1_T1w.xml (file)
add(ok): sub-453666/report/catlog_sub-453666_acq-headmotion1_T1w.txt (file)
add(ok): sub-453666/report/catreport_sub-453666_acq-headmotion1_T1w.pdf (file)
add(ok): sub-453666/label/catROI_sub-453666_acq-headmotion2_T1w.mat (file)
add(ok): sub-453666/label/catROI_sub-453666_acq-standard_T1w.mat (file)
add(ok): sub-453666/mri/it_sub-453666_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-453666/mri/it_sub-453666_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-453666/mri/it_sub-453666_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-453666/mri/it_sub-453666_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-453666/mri/m0wp1sub-453666_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-453666/mri/m0wp1sub-453666_acq-standard_T1w.nii.gz (file)
add(ok): sub-453666/mri/mwp1sub-453666_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-453666/mri/mwp1sub-453666_acq-standard_T1w.nii.gz (file)
add(ok): sub-453666/mri/p0sub-453666_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-453666/mri/p0sub-453666_acq-standard_T1w.nii.gz (file)
add(ok): sub-453666/mri/t_sub-453666_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-453666/mri/t_sub-453666_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-453666/mri/t_sub-453666_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-453666/mri/t_sub-453666_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-453666/mri/wp0sub-453666_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-453666/mri/wp0sub-453666_acq-standard_T1w.nii.gz (file)
add(ok): sub-453666/report/cat_sub-453666_acq-headmotion2_T1w.mat (file)
add(ok): sub-453666/report/cat_sub-453666_acq-standard_T1w.mat (file)
add(ok): sub-453666/report/catreport_sub-453666_acq-headmotion2_T1w.pdf (file)
add(ok): sub-453666/report/catreport_sub-453666_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-453666/label/catROI_sub-453666_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/label/catROI_sub-453666_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/label/catROI_sub-453666_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/it_sub-453666_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/it_sub-453666_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/it_sub-453666_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/it_sub-453666_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/it_sub-453666_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/it_sub-453666_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/m0wp1sub-453666_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/m0wp1sub-453666_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/m0wp1sub-453666_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/mwp1sub-453666_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/mwp1sub-453666_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/mwp1sub-453666_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/p0sub-453666_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/p0sub-453666_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/p0sub-453666_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/t_sub-453666_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/t_sub-453666_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/t_sub-453666_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/t_sub-453666_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/t_sub-453666_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/t_sub-453666_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/wp0sub-453666_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/wp0sub-453666_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-453666/mri/wp0sub-453666_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-453666/report/cat_sub-453666_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/report/cat_sub-453666_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/report/cat_sub-453666_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-453666/report/catreport_sub-453666_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-453666/report/catreport_sub-453666_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-453666/report/catreport_sub-453666_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000631 seconds
flock: executing git
SUCCESS
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