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ds004173-catqc/logs/10070970.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_406648/ds (dataset)
install(ok): /var/lib/condor/execute/dir_406648/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_406648/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:38:53 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:38:54 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_406648/ds/sub-257563/sub-257563_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-257563/sub-257563_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 46s
Affine preprocessing (APP)
Initialize 5s
Estimate background 5s
Initial correction 5s
Refine background 3s
Final correction 4s
Final scaling 4s
30s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
55s
SPM preprocessing 1 (estimate 2): 41s
SPM preprocessing 2 (write)
Write Segmentation 14s
Update Segmentation 11s
Update Skull-Stripping 32s
Update probability maps 6s
64s
Global intensity correction 11s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 2s
69s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 1s
Prepare segments (LASmod = 1.00) 11s
Estimate local tissue thresholds (WM) 15s
Estimate local tissue thresholds (GM) 18s
Intensity transformation 0s
SANLM denoising after LAS (medium) 21s
71s
ROI segmentation (partitioning)
Atlas -> subject space 6s
Major structures 14s
Ventricle detection 11s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 51s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
96s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 25s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 5s
ROI estimation of 'neuromorphometrics' atlas 20s
ROI estimation of 'lpba40' atlas 6s
ROI estimation of 'hammers' atlas 14s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 3s
ROI estimation of 'ibsr' atlas 5s
ROI estimation of 'aal3' atlas 7s
ROI estimation of 'mori' atlas 9s
ROI estimation of 'anatomy3' atlas 13s
ROI estimation of 'julichbrain' atlas 17s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 3s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 7s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 14s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 33s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 42s
Write results 43s
202s
Quality check 10s
/var/lib/condor/execute/dir_406648/ds/sub-257563/report/catreport_sub-257563_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 15 minute(s) and 31 second(s).
Image Quality Rating (IQR): 87.25% (B+)
GM volume (GMV): 46.70% (748.92 / 1603.80 ml)
Segmentations are saved in /var/lib/condor/execute/dir_406648/ds/sub-257563/mri
Reports are saved in /var/lib/condor/execute/dir_406648/ds/sub-257563/report
Labels are saved in /var/lib/condor/execute/dir_406648/ds/sub-257563/label
------------------------------------------------------------------------
22-Oct-2025 00:54:26 - Done 'CAT12: Segmentation'
22-Oct-2025 00:54:26 - Done
Bye for now...
get(ok): sourcedata/raw/sub-257563/anat/sub-257563_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_406648/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_406648/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-257563/label/catROI_sub-257563_acq-headmotion2_T1w.mat (file)
add(ok): sub-257563/label/catROI_sub-257563_acq-headmotion2_T1w.xml (file)
add(ok): sub-257563/mri/it_sub-257563_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-257563/mri/it_sub-257563_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-257563/mri/m0wp1sub-257563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-257563/mri/mwp1sub-257563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-257563/mri/p0sub-257563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-257563/mri/t_sub-257563_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-257563/mri/t_sub-257563_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-257563/mri/wp0sub-257563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-257563/report/cat_sub-257563_acq-headmotion2_T1w.mat (file)
add(ok): sub-257563/report/cat_sub-257563_acq-headmotion2_T1w.xml (file)
add(ok): sub-257563/report/catlog_sub-257563_acq-headmotion2_T1w.txt (file)
add(ok): sub-257563/report/catreport_sub-257563_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:54:58 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:54:59 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_406648/ds/sub-257563/sub-257563_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-257563/sub-257563_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 46s
Affine preprocessing (APP)
Initialize 5s
Estimate background 5s
Initial correction 5s
Refine background 3s
Final correction 4s
Final scaling 4s
31s
Correct center-of-mass 4s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
58s
SPM preprocessing 1 (estimate 2): 44s
SPM preprocessing 2 (write)
Write Segmentation 14s
Update Segmentation 11s
Update Skull-Stripping 33s
Update probability maps 6s
65s
Global intensity correction 12s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 2s
69s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 1s
Prepare segments (LASmod = 1.00) 11s
Estimate local tissue thresholds (WM) 15s
Estimate local tissue thresholds (GM) 18s
Intensity transformation 0s
SANLM denoising after LAS (medium) 21s
71s
ROI segmentation (partitioning)
Atlas -> subject space 6s
Major structures 14s
Ventricle detection 14s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 53s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
100s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 25s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 6s
ROI estimation of 'neuromorphometrics' atlas 21s
ROI estimation of 'lpba40' atlas 6s
ROI estimation of 'hammers' atlas 15s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 3s
ROI estimation of 'ibsr' atlas 5s
ROI estimation of 'aal3' atlas 8s
ROI estimation of 'mori' atlas 10s
ROI estimation of 'anatomy3' atlas 15s
ROI estimation of 'julichbrain' atlas 19s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 3s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 8s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 16s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 38s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 48s
Write results 50s
226s
Quality check 10s
/var/lib/condor/execute/dir_406648/ds/sub-257563/report/catreport_sub-257563_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 16 minute(s) and 9 second(s).
Image Quality Rating (IQR): 86.76% (B+)
GM volume (GMV): 46.77% (751.00 / 1605.83 ml)
Segmentations are saved in /var/lib/condor/execute/dir_406648/ds/sub-257563/mri
Reports are saved in /var/lib/condor/execute/dir_406648/ds/sub-257563/report
Labels are saved in /var/lib/condor/execute/dir_406648/ds/sub-257563/label
------------------------------------------------------------------------
22-Oct-2025 01:11:10 - Done 'CAT12: Segmentation'
22-Oct-2025 01:11:10 - Done
Bye for now...
get(ok): sourcedata/raw/sub-257563/anat/sub-257563_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-257563/label/catROI_sub-257563_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-257563/mri/it_sub-257563_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-257563/mri/it_sub-257563_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-257563/mri/m0wp1sub-257563_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-257563/mri/mwp1sub-257563_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-257563/mri/p0sub-257563_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-257563/mri/t_sub-257563_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-257563/mri/t_sub-257563_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-257563/mri/wp0sub-257563_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-257563/report/cat_sub-257563_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-257563/report/catreport_sub-257563_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_406648/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-257563/label/catROI_sub-257563_acq-headmotion1_T1w.mat (file)
add(ok): sub-257563/label/catROI_sub-257563_acq-headmotion1_T1w.xml (file)
add(ok): sub-257563/mri/it_sub-257563_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-257563/mri/it_sub-257563_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-257563/mri/m0wp1sub-257563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-257563/mri/mwp1sub-257563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-257563/mri/p0sub-257563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-257563/mri/t_sub-257563_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-257563/mri/t_sub-257563_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-257563/mri/wp0sub-257563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-257563/report/cat_sub-257563_acq-headmotion1_T1w.mat (file)
add(ok): sub-257563/report/cat_sub-257563_acq-headmotion1_T1w.xml (file)
add(ok): sub-257563/report/catlog_sub-257563_acq-headmotion1_T1w.txt (file)
add(ok): sub-257563/report/catreport_sub-257563_acq-headmotion1_T1w.pdf (file)
add(ok): sub-257563/label/catROI_sub-257563_acq-headmotion2_T1w.mat (file)
add(ok): sub-257563/mri/it_sub-257563_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-257563/mri/it_sub-257563_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-257563/mri/m0wp1sub-257563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-257563/mri/mwp1sub-257563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-257563/mri/p0sub-257563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-257563/mri/t_sub-257563_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-257563/mri/t_sub-257563_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-257563/mri/wp0sub-257563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-257563/report/cat_sub-257563_acq-headmotion2_T1w.mat (file)
add(ok): sub-257563/report/catreport_sub-257563_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:11:42 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:11:42 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_406648/ds/sub-257563/sub-257563_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-257563/sub-257563_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 48s
Affine preprocessing (APP)
Initialize 5s
Estimate background 5s
Initial correction 5s
Refine background 3s
Final correction 4s
Final scaling 4s
30s
Correct center-of-mass 4s
Affine registration 6s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
55s
SPM preprocessing 1 (estimate 2): 43s
SPM preprocessing 2 (write)
Write Segmentation 14s
Update Segmentation 11s
Update Skull-Stripping 34s
Update probability maps 6s
66s
Global intensity correction 12s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 2s
69s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 1s
Prepare segments (LASmod = 1.00) 11s
Estimate local tissue thresholds (WM) 15s
Estimate local tissue thresholds (GM) 18s
Intensity transformation 0s
SANLM denoising after LAS (medium) 22s
72s
ROI segmentation (partitioning)
Atlas -> subject space 6s
Major structures 14s
Ventricle detection 14s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 50s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
98s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 26s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 6s
ROI estimation of 'neuromorphometrics' atlas 21s
ROI estimation of 'lpba40' atlas 6s
ROI estimation of 'hammers' atlas 15s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 3s
ROI estimation of 'ibsr' atlas 5s
ROI estimation of 'aal3' atlas 7s
ROI estimation of 'mori' atlas 9s
ROI estimation of 'anatomy3' atlas 13s
ROI estimation of 'julichbrain' atlas 17s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 3s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 7s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 14s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 33s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 42s
Write results 43s
202s
Quality check 10s
/var/lib/condor/execute/dir_406648/ds/sub-257563/report/catreport_sub-257563_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 15 minute(s) and 37 second(s).
Image Quality Rating (IQR): 87.52% (B+)
GM volume (GMV): 47.02% (755.00 / 1605.62 ml)
Segmentations are saved in /var/lib/condor/execute/dir_406648/ds/sub-257563/mri
Reports are saved in /var/lib/condor/execute/dir_406648/ds/sub-257563/report
Labels are saved in /var/lib/condor/execute/dir_406648/ds/sub-257563/label
------------------------------------------------------------------------
22-Oct-2025 01:27:21 - Done 'CAT12: Segmentation'
22-Oct-2025 01:27:21 - Done
Bye for now...
get(ok): sourcedata/raw/sub-257563/anat/sub-257563_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-257563/label/catROI_sub-257563_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-257563/label/catROI_sub-257563_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-257563/mri/it_sub-257563_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-257563/mri/it_sub-257563_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-257563/mri/it_sub-257563_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-257563/mri/it_sub-257563_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-257563/mri/m0wp1sub-257563_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-257563/mri/m0wp1sub-257563_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-257563/mri/mwp1sub-257563_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-257563/mri/mwp1sub-257563_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-257563/mri/p0sub-257563_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-257563/mri/p0sub-257563_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-257563/mri/t_sub-257563_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-257563/mri/t_sub-257563_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-257563/mri/t_sub-257563_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-257563/mri/t_sub-257563_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-257563/mri/wp0sub-257563_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-257563/mri/wp0sub-257563_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-257563/report/cat_sub-257563_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-257563/report/cat_sub-257563_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-257563/report/catreport_sub-257563_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-257563/report/catreport_sub-257563_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_406648/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-257563/label/catROI_sub-257563_acq-standard_T1w.mat (file)
add(ok): sub-257563/label/catROI_sub-257563_acq-standard_T1w.xml (file)
add(ok): sub-257563/mri/it_sub-257563_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-257563/mri/it_sub-257563_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-257563/mri/m0wp1sub-257563_acq-standard_T1w.nii.gz (file)
add(ok): sub-257563/mri/mwp1sub-257563_acq-standard_T1w.nii.gz (file)
add(ok): sub-257563/mri/p0sub-257563_acq-standard_T1w.nii.gz (file)
add(ok): sub-257563/mri/t_sub-257563_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-257563/mri/t_sub-257563_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-257563/mri/wp0sub-257563_acq-standard_T1w.nii.gz (file)
add(ok): sub-257563/report/cat_sub-257563_acq-standard_T1w.mat (file)
add(ok): sub-257563/report/cat_sub-257563_acq-standard_T1w.xml (file)
add(ok): sub-257563/report/catlog_sub-257563_acq-standard_T1w.txt (file)
add(ok): sub-257563/report/catreport_sub-257563_acq-standard_T1w.pdf (file)
add(ok): sub-257563/label/catROI_sub-257563_acq-headmotion1_T1w.mat (file)
add(ok): sub-257563/label/catROI_sub-257563_acq-headmotion2_T1w.mat (file)
add(ok): sub-257563/mri/it_sub-257563_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-257563/mri/it_sub-257563_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-257563/mri/it_sub-257563_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-257563/mri/it_sub-257563_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-257563/mri/m0wp1sub-257563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-257563/mri/m0wp1sub-257563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-257563/mri/mwp1sub-257563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-257563/mri/mwp1sub-257563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-257563/mri/p0sub-257563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-257563/mri/p0sub-257563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-257563/mri/t_sub-257563_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-257563/mri/t_sub-257563_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-257563/mri/t_sub-257563_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-257563/mri/t_sub-257563_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-257563/mri/wp0sub-257563_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-257563/mri/wp0sub-257563_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-257563/report/cat_sub-257563_acq-headmotion1_T1w.mat (file)
add(ok): sub-257563/report/cat_sub-257563_acq-headmotion2_T1w.mat (file)
add(ok): sub-257563/report/catreport_sub-257563_acq-headmotion1_T1w.pdf (file)
add(ok): sub-257563/report/catreport_sub-257563_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-257563/label/catROI_sub-257563_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/label/catROI_sub-257563_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/label/catROI_sub-257563_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/it_sub-257563_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/it_sub-257563_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/it_sub-257563_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/it_sub-257563_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/it_sub-257563_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/it_sub-257563_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/m0wp1sub-257563_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/m0wp1sub-257563_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/m0wp1sub-257563_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/mwp1sub-257563_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/mwp1sub-257563_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/mwp1sub-257563_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/p0sub-257563_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/p0sub-257563_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/p0sub-257563_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/t_sub-257563_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/t_sub-257563_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/t_sub-257563_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/t_sub-257563_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/t_sub-257563_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/t_sub-257563_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/wp0sub-257563_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/wp0sub-257563_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-257563/mri/wp0sub-257563_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-257563/report/cat_sub-257563_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/report/cat_sub-257563_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/report/cat_sub-257563_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-257563/report/catreport_sub-257563_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-257563/report/catreport_sub-257563_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-257563/report/catreport_sub-257563_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001084 seconds
flock: executing git
SUCCESS
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