f.hoffstaedter/ds004173-catqc
1
0
Fork 0
Code Pull requests Packages Activity
ds004173-catqc/logs/10070964.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

597 lines
37 KiB (Stored with Git Annex)
Text
Raw Permalink Blame History

This file contains invisible Unicode characters

This file contains invisible Unicode characters that are indistinguishable to humans but may be processed differently by a computer. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

install(ok): /var/lib/condor/execute/dir_283849/ds (dataset)
install(ok): /var/lib/condor/execute/dir_283849/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_283849/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:38:54 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:38:54 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_283849/ds/sub-003617/sub-003617_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-003617/sub-003617_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 41s
Affine preprocessing (APP)
Initialize 5s
Estimate background 5s
Initial correction 4s
Refine background 2s
Final correction 3s
Final scaling 4s
28s
Correct center-of-mass 3s
Affine registration 5s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
48s
SPM preprocessing 1 (estimate 2): 36s
SPM preprocessing 2 (write)
Write Segmentation 14s
Update Segmentation 10s
Update Skull-Stripping 28s
Update probability maps 6s
57s
Global intensity correction 10s
SANLM denoising after intensity normalization (medium) 11s
Fast Optimized Shooting registration 2s
64s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 2s
Prepare partitions 1s
Prepare segments (LASmod = 1.01) 9s
Estimate local tissue thresholds (WM) 13s
Estimate local tissue thresholds (GM) 15s
Intensity transformation 0s
SANLM denoising after LAS (medium) 18s
59s
ROI segmentation (partitioning)
Atlas -> subject space 5s
Major structures 11s
Ventricle detection 8s
Blood vessel detection 6s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 33s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
68s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 20s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 2s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
8s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 5s
ROI estimation of 'neuromorphometrics' atlas 19s
ROI estimation of 'lpba40' atlas 6s
ROI estimation of 'hammers' atlas 14s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 3s
ROI estimation of 'ibsr' atlas 5s
ROI estimation of 'aal3' atlas 8s
ROI estimation of 'mori' atlas 10s
ROI estimation of 'anatomy3' atlas 14s
ROI estimation of 'julichbrain' atlas 18s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 3s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 8s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 15s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 45s
Write results 46s
210s
Quality check 8s
/var/lib/condor/execute/dir_283849/ds/sub-003617/report/catreport_sub-003617_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 13 minute(s) and 48 second(s).
Image Quality Rating (IQR): 87.53% (B+)
GM volume (GMV): 42.29% (592.83 / 1401.74 ml)
Segmentations are saved in /var/lib/condor/execute/dir_283849/ds/sub-003617/mri
Reports are saved in /var/lib/condor/execute/dir_283849/ds/sub-003617/report
Labels are saved in /var/lib/condor/execute/dir_283849/ds/sub-003617/label
------------------------------------------------------------------------
22-Oct-2025 00:52:44 - Done 'CAT12: Segmentation'
22-Oct-2025 00:52:44 - Done
Bye for now...
get(ok): sourcedata/raw/sub-003617/anat/sub-003617_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_283849/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_283849/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-003617/label/catROI_sub-003617_acq-headmotion1_T1w.mat (file)
add(ok): sub-003617/label/catROI_sub-003617_acq-headmotion1_T1w.xml (file)
add(ok): sub-003617/mri/it_sub-003617_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-003617/mri/it_sub-003617_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-003617/mri/m0wp1sub-003617_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-003617/mri/mwp1sub-003617_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-003617/mri/p0sub-003617_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-003617/mri/t_sub-003617_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-003617/mri/t_sub-003617_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-003617/mri/wp0sub-003617_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-003617/report/cat_sub-003617_acq-headmotion1_T1w.mat (file)
add(ok): sub-003617/report/cat_sub-003617_acq-headmotion1_T1w.xml (file)
add(ok): sub-003617/report/catlog_sub-003617_acq-headmotion1_T1w.txt (file)
add(ok): sub-003617/report/catreport_sub-003617_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:53:14 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:53:15 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_283849/ds/sub-003617/sub-003617_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-003617/sub-003617_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 42s
Affine preprocessing (APP)
Initialize 5s
Estimate background 5s
Initial correction 4s
Refine background 2s
Final correction 3s
Final scaling 4s
27s
Correct center-of-mass 3s
Affine registration 5s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
46s
SPM preprocessing 1 (estimate 2): 31s
SPM preprocessing 2 (write)
Write Segmentation 13s
Update Segmentation 10s
Update Skull-Stripping 28s
Update probability maps 6s
56s
Global intensity correction 10s
SANLM denoising after intensity normalization (medium) 11s
Fast Optimized Shooting registration 2s
63s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 2s
Prepare partitions 1s
Prepare segments (LASmod = 1.05) 9s
Estimate local tissue thresholds (WM) 13s
Estimate local tissue thresholds (GM) 15s
Intensity transformation 0s
SANLM denoising after LAS (medium) 18s
60s
ROI segmentation (partitioning)
Atlas -> subject space 5s
Major structures 11s
Ventricle detection 9s
Blood vessel detection 6s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.11) 38s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
75s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 22s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 2s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
8s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 5s
ROI estimation of 'neuromorphometrics' atlas 19s
ROI estimation of 'lpba40' atlas 6s
ROI estimation of 'hammers' atlas 14s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 3s
ROI estimation of 'ibsr' atlas 4s
ROI estimation of 'aal3' atlas 7s
ROI estimation of 'mori' atlas 9s
ROI estimation of 'anatomy3' atlas 12s
ROI estimation of 'julichbrain' atlas 17s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 3s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 7s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 13s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 32s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 41s
Write results 42s
195s
Quality check 8s
/var/lib/condor/execute/dir_283849/ds/sub-003617/report/catreport_sub-003617_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 13 minute(s) and 32 second(s).
Image Quality Rating (IQR): 87.80% (B+)
GM volume (GMV): 42.74% (598.66 / 1400.69 ml)
Segmentations are saved in /var/lib/condor/execute/dir_283849/ds/sub-003617/mri
Reports are saved in /var/lib/condor/execute/dir_283849/ds/sub-003617/report
Labels are saved in /var/lib/condor/execute/dir_283849/ds/sub-003617/label
------------------------------------------------------------------------
22-Oct-2025 01:06:48 - Done 'CAT12: Segmentation'
22-Oct-2025 01:06:48 - Done
Bye for now...
get(ok): sourcedata/raw/sub-003617/anat/sub-003617_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-003617/label/catROI_sub-003617_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-003617/mri/it_sub-003617_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-003617/mri/it_sub-003617_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-003617/mri/m0wp1sub-003617_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-003617/mri/mwp1sub-003617_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-003617/mri/p0sub-003617_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-003617/mri/t_sub-003617_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-003617/mri/t_sub-003617_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-003617/mri/wp0sub-003617_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-003617/report/cat_sub-003617_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-003617/report/catreport_sub-003617_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_283849/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-003617/label/catROI_sub-003617_acq-standard_T1w.mat (file)
add(ok): sub-003617/label/catROI_sub-003617_acq-standard_T1w.xml (file)
add(ok): sub-003617/mri/it_sub-003617_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-003617/mri/it_sub-003617_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-003617/mri/m0wp1sub-003617_acq-standard_T1w.nii.gz (file)
add(ok): sub-003617/mri/mwp1sub-003617_acq-standard_T1w.nii.gz (file)
add(ok): sub-003617/mri/p0sub-003617_acq-standard_T1w.nii.gz (file)
add(ok): sub-003617/mri/t_sub-003617_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-003617/mri/t_sub-003617_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-003617/mri/wp0sub-003617_acq-standard_T1w.nii.gz (file)
add(ok): sub-003617/report/cat_sub-003617_acq-standard_T1w.mat (file)
add(ok): sub-003617/report/cat_sub-003617_acq-standard_T1w.xml (file)
add(ok): sub-003617/report/catlog_sub-003617_acq-standard_T1w.txt (file)
add(ok): sub-003617/report/catreport_sub-003617_acq-standard_T1w.pdf (file)
add(ok): sub-003617/label/catROI_sub-003617_acq-headmotion1_T1w.mat (file)
add(ok): sub-003617/mri/it_sub-003617_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-003617/mri/it_sub-003617_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-003617/mri/m0wp1sub-003617_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-003617/mri/mwp1sub-003617_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-003617/mri/p0sub-003617_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-003617/mri/t_sub-003617_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-003617/mri/t_sub-003617_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-003617/mri/wp0sub-003617_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-003617/report/cat_sub-003617_acq-headmotion1_T1w.mat (file)
add(ok): sub-003617/report/catreport_sub-003617_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:07:19 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:07:19 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_283849/ds/sub-003617/sub-003617_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-003617/sub-003617_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 42s
Affine preprocessing (APP)
Initialize 5s
Estimate background 5s
Initial correction 4s
Refine background 2s
Final correction 3s
Final scaling 4s
28s
Correct center-of-mass 3s
Affine registration 5s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
48s
SPM preprocessing 1 (estimate 2): 36s
SPM preprocessing 2 (write)
Write Segmentation 14s
Update Segmentation 10s
Update Skull-Stripping 28s
Update probability maps 6s
56s
Global intensity correction 11s
SANLM denoising after intensity normalization (medium) 11s
Fast Optimized Shooting registration 2s
63s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 2s
Prepare partitions 1s
Prepare segments (LASmod = 1.04) 9s
Estimate local tissue thresholds (WM) 13s
Estimate local tissue thresholds (GM) 15s
Intensity transformation 0s
SANLM denoising after LAS (medium) 18s
60s
ROI segmentation (partitioning)
Atlas -> subject space 5s
Major structures 11s
Ventricle detection 8s
Blood vessel detection 6s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 34s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
69s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 22s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 2s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
8s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 5s
ROI estimation of 'neuromorphometrics' atlas 20s
ROI estimation of 'lpba40' atlas 6s
ROI estimation of 'hammers' atlas 14s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 3s
ROI estimation of 'ibsr' atlas 5s
ROI estimation of 'aal3' atlas 8s
ROI estimation of 'mori' atlas 10s
ROI estimation of 'anatomy3' atlas 14s
ROI estimation of 'julichbrain' atlas 18s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 3s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 8s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 15s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 45s
Write results 47s
211s
Quality check 8s
/var/lib/condor/execute/dir_283849/ds/sub-003617/report/catreport_sub-003617_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 13 minute(s) and 52 second(s).
Image Quality Rating (IQR): 86.59% (B)
GM volume (GMV): 42.61% (595.92 / 1398.48 ml)
Segmentations are saved in /var/lib/condor/execute/dir_283849/ds/sub-003617/mri
Reports are saved in /var/lib/condor/execute/dir_283849/ds/sub-003617/report
Labels are saved in /var/lib/condor/execute/dir_283849/ds/sub-003617/label
------------------------------------------------------------------------
22-Oct-2025 01:21:13 - Done 'CAT12: Segmentation'
22-Oct-2025 01:21:13 - Done
Bye for now...
get(ok): sourcedata/raw/sub-003617/anat/sub-003617_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-003617/label/catROI_sub-003617_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-003617/label/catROI_sub-003617_acq-standard_T1w.mat (file)
unlock(ok): sub-003617/mri/it_sub-003617_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-003617/mri/it_sub-003617_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-003617/mri/it_sub-003617_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-003617/mri/it_sub-003617_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-003617/mri/m0wp1sub-003617_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-003617/mri/m0wp1sub-003617_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-003617/mri/mwp1sub-003617_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-003617/mri/mwp1sub-003617_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-003617/mri/p0sub-003617_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-003617/mri/p0sub-003617_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-003617/mri/t_sub-003617_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-003617/mri/t_sub-003617_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-003617/mri/t_sub-003617_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-003617/mri/t_sub-003617_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-003617/mri/wp0sub-003617_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-003617/mri/wp0sub-003617_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-003617/report/cat_sub-003617_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-003617/report/cat_sub-003617_acq-standard_T1w.mat (file)
unlock(ok): sub-003617/report/catreport_sub-003617_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-003617/report/catreport_sub-003617_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_283849/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-003617/label/catROI_sub-003617_acq-headmotion2_T1w.mat (file)
add(ok): sub-003617/label/catROI_sub-003617_acq-headmotion2_T1w.xml (file)
add(ok): sub-003617/mri/it_sub-003617_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-003617/mri/it_sub-003617_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-003617/mri/m0wp1sub-003617_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-003617/mri/mwp1sub-003617_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-003617/mri/p0sub-003617_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-003617/mri/t_sub-003617_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-003617/mri/t_sub-003617_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-003617/mri/wp0sub-003617_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-003617/report/cat_sub-003617_acq-headmotion2_T1w.mat (file)
add(ok): sub-003617/report/cat_sub-003617_acq-headmotion2_T1w.xml (file)
add(ok): sub-003617/report/catlog_sub-003617_acq-headmotion2_T1w.txt (file)
add(ok): sub-003617/report/catreport_sub-003617_acq-headmotion2_T1w.pdf (file)
add(ok): sub-003617/label/catROI_sub-003617_acq-headmotion1_T1w.mat (file)
add(ok): sub-003617/label/catROI_sub-003617_acq-standard_T1w.mat (file)
add(ok): sub-003617/mri/it_sub-003617_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-003617/mri/it_sub-003617_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-003617/mri/it_sub-003617_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-003617/mri/it_sub-003617_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-003617/mri/m0wp1sub-003617_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-003617/mri/m0wp1sub-003617_acq-standard_T1w.nii.gz (file)
add(ok): sub-003617/mri/mwp1sub-003617_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-003617/mri/mwp1sub-003617_acq-standard_T1w.nii.gz (file)
add(ok): sub-003617/mri/p0sub-003617_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-003617/mri/p0sub-003617_acq-standard_T1w.nii.gz (file)
add(ok): sub-003617/mri/t_sub-003617_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-003617/mri/t_sub-003617_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-003617/mri/t_sub-003617_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-003617/mri/t_sub-003617_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-003617/mri/wp0sub-003617_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-003617/mri/wp0sub-003617_acq-standard_T1w.nii.gz (file)
add(ok): sub-003617/report/cat_sub-003617_acq-headmotion1_T1w.mat (file)
add(ok): sub-003617/report/cat_sub-003617_acq-standard_T1w.mat (file)
add(ok): sub-003617/report/catreport_sub-003617_acq-headmotion1_T1w.pdf (file)
add(ok): sub-003617/report/catreport_sub-003617_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-003617/label/catROI_sub-003617_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/label/catROI_sub-003617_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/label/catROI_sub-003617_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/it_sub-003617_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/it_sub-003617_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/it_sub-003617_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/it_sub-003617_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/it_sub-003617_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/it_sub-003617_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/m0wp1sub-003617_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/m0wp1sub-003617_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/m0wp1sub-003617_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/mwp1sub-003617_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/mwp1sub-003617_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/mwp1sub-003617_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/p0sub-003617_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/p0sub-003617_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/p0sub-003617_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/t_sub-003617_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/t_sub-003617_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/t_sub-003617_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/t_sub-003617_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/t_sub-003617_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/t_sub-003617_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/wp0sub-003617_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/wp0sub-003617_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-003617/mri/wp0sub-003617_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-003617/report/cat_sub-003617_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/report/cat_sub-003617_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/report/cat_sub-003617_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-003617/report/catreport_sub-003617_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-003617/report/catreport_sub-003617_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-003617/report/catreport_sub-003617_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001050 seconds
flock: executing git
SUCCESS
View git blame Copy permalink