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ds003416-mriqc/logs/sub-cIVs048_10066472.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

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install(ok): /var/lib/condor/execute/dir_3950163/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3950163/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3950163/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_3950163/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:57:03 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-10-09 21:57:03 | IMPORTANT | mriqc | File size ('t1w'): 0.00|0.00 GB [maximum|average].
2025-10-09 21:57:03 | IMPORTANT | mriqc | Extracting metadata and entities for 6 input runs of modality 'dwi'...
2025-10-09 21:57:03 | WARNING | nipype.workflow | 2 cannot be processed (too short or too long)
2025-10-09 21:57:03 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:57:03 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215701_45f07de5-9843-470d-88b6-163469698452.toml.
2025-10-09 21:57:08 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:57:09 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:57:09 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 4 NIfTI files..
2025-10-09 21:57:10 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-10-09 21:57:14 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:57:19 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/6c2b82dbeea3461f25311b3e7530eea524785dec/conform".
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.285538s.
2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/load_bmat".
2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.177134s.
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/sanitize".
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:24 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.753765s.
2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/7a8bf496b15870ccd305ffd15927445c4080cb81/provenance".
2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.019077s.
2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/load_bmat".
2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.021724s.
2025-10-09 21:57:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/sanitize".
2025-10-09 21:57:27 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:28 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.79047s.
2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/1ae2c9191f6074d5c7a349f65394d3562887ed8c/provenance".
2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.019109s.
2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/load_bmat".
2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023585s.
2025-10-09 21:57:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/sanitize".
2025-10-09 21:57:31 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:32 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.046122s.
2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/d1fcdf3a2aabdfb95c213a6b28a150677d254951/provenance".
2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.024258s.
2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/load_bmat".
2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.022729s.
2025-10-09 21:57:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/sanitize".
2025-10-09 21:57:35 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:36 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.029938s.
2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/provenance".
2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.024299s.
2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/pre_clip".
2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:57:47 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 10.343284s.
2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/6c2b82dbeea3461f25311b3e7530eea524785dec/RotationMask".
2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:57:50 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 1.148104s.
2025-10-09 21:57:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/PlotMosaicNoise".
2025-10-09 21:57:51 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:57:56 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 5.35786s.
2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/shells".
2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000719s.
2025-10-09 21:57:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/piesno".
2025-10-09 21:57:59 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:00 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.944864s.
2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/shells".
2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000702s.
2025-10-09 21:58:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/piesno".
2025-10-09 21:58:03 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.951093s.
2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/shells".
2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000768s.
2025-10-09 21:58:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/piesno".
2025-10-09 21:58:07 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 2.103784s.
2025-10-09 21:58:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/shells".
2025-10-09 21:58:11 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:11 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000831s.
2025-10-09 21:58:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/piesno".
2025-10-09 21:58:13 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.387254s.
2025-10-09 21:58:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/pre_n4".
2025-10-09 21:58:15 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:00:27 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 132.073761s.
2025-10-09 22:00:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/ds_report_background".
2025-10-09 22:00:29 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:00:29 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.009447s.
2025-10-09 22:00:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/dwi_ref".
2025-10-09 22:00:29 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:30 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 1.095442s.
2025-10-09 22:00:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/get_lowb".
2025-10-09 22:00:31 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:31 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.344199s.
2025-10-09 22:00:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/dwi_ref".
2025-10-09 22:00:33 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:33 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.529285s.
2025-10-09 22:00:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/get_lowb".
2025-10-09 22:00:35 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:35 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.332866s.
2025-10-09 22:00:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/dwi_ref".
2025-10-09 22:00:37 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:38 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.936836s.
2025-10-09 22:00:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/get_lowb".
2025-10-09 22:00:39 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:39 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.469265s.
2025-10-09 22:00:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/dwi_ref".
2025-10-09 22:00:41 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:42 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.796984s.
2025-10-09 22:00:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/get_lowb".
2025-10-09 22:00:43 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:44 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.863689s.
2025-10-09 22:00:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/synthstrip".
2025-10-09 22:00:45 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:02:05 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 79.68271s.
2025-10-09 22:02:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/pre_clip".
2025-10-09 22:02:05 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:02:06 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.7774s.
2025-10-09 22:02:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/SharpenEPI".
2025-10-09 22:02:07 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:02:15 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.323765999999999s.
2025-10-09 22:02:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/hmc_b0".
2025-10-09 22:02:17 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:02:40 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 23.22642s.
2025-10-09 22:02:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/pre_clip".
2025-10-09 22:02:41 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:02:42 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.715411s.
2025-10-09 22:02:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/SharpenEPI".
2025-10-09 22:02:43 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:02:51 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.256514s.
2025-10-09 22:02:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/hmc_b0".
2025-10-09 22:02:53 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:03:16 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 22.876319s.
2025-10-09 22:03:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/pre_clip".
2025-10-09 22:03:17 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:03:18 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.707434s.
2025-10-09 22:03:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/SharpenEPI".
2025-10-09 22:03:19 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:03:27 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.156906s.
2025-10-09 22:03:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/hmc_b0".
2025-10-09 22:03:29 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:03:57 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 28.384103s.
2025-10-09 22:03:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/pre_clip".
2025-10-09 22:03:59 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:04:00 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.64499s.
2025-10-09 22:04:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/SharpenEPI".
2025-10-09 22:04:01 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:04:09 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.849837s.
2025-10-09 22:04:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/hmc_b0".
2025-10-09 22:04:09 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:04:36 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 27.025352s.
2025-10-09 22:04:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/post_n4".
2025-10-09 22:04:37 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:06 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 29.300228s.
2025-10-09 22:05:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/6c2b82dbeea3461f25311b3e7530eea524785dec/smoothness".
2025-10-09 22:05:07 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:05:13 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 5.6968689999999995s.
2025-10-09 22:05:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/PlotMosaicZoomed".
2025-10-09 22:05:13 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:05:18 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 5.410993s.
2025-10-09 22:05:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/PlotBrainmask".
2025-10-09 22:05:19 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:05:23 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 4.052395s.
2025-10-09 22:05:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/pre_n4".
2025-10-09 22:05:25 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:33 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.987282s.
2025-10-09 22:05:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/pre_n4".
2025-10-09 22:05:35 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:43 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.89666s.
2025-10-09 22:05:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/pre_n4".
2025-10-09 22:05:45 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:53 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.001357s.
2025-10-09 22:05:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/pre_n4".
2025-10-09 22:05:55 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:03 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.907206s.
2025-10-09 22:06:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/final_masked".
2025-10-09 22:06:05 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:06:05 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.347375s.
2025-10-09 22:06:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization".
2025-10-09 22:06:07 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:06:08 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:07:30 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/stderr.nipype-init).
2025-10-09 22:07:30 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:07:30 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:07:49 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:07:51 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:07:51 | INFO | niworkflows | Generating visual report
2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 123.776413s.
2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/ds_report_zoomed".
2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.005662s.
2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/ds_report_bmask".
2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.005535s.
2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/synthstrip".
2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:08:57 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 46.039027s.
2025-10-09 22:08:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/synthstrip".
2025-10-09 22:08:59 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:09:47 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 48.26904s.
2025-10-09 22:09:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/synthstrip".
2025-10-09 22:09:49 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:10:41 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 51.719745s.
2025-10-09 22:10:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/synthstrip".
2025-10-09 22:10:41 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:11:30 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 49.151902s.
2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/ds_report_norm".
2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005684s.
2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/post_n4".
2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:34 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.860639s.
2025-10-09 22:11:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/sp_mask".
2025-10-09 22:11:35 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:11:36 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.902477s.
2025-10-09 22:11:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/drift".
2025-10-09 22:11:37 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:11:37 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9989, 0.9937, 1.0031, 0.9981, 0.9922, 0.9868.
2025-10-09 22:11:39 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.765867s.
2025-10-09 22:11:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/EPI2MNI".
2025-10-09 22:11:39 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:11:39 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:12:17 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/EPI2MNI/stderr.nipype-init).
2025-10-09 22:12:17 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:12:17 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-107_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-107_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-107_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:13:36 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:13:36 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:13:36 | INFO | niworkflows | Generating visual report
2025-10-09 22:13:55 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 135.588045s.
2025-10-09 22:13:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/post_n4".
2025-10-09 22:13:55 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:58 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.683062s.
2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/sp_mask".
2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:14:00 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.621714s.
2025-10-09 22:14:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/drift".
2025-10-09 22:14:01 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:14:01 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0208, 0.9956, 1.0244, 1.0209, 1.0171, 1.0179.
2025-10-09 22:14:03 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.600803s.
2025-10-09 22:14:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/EPI2MNI".
2025-10-09 22:14:03 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:14:03 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:14:36 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/EPI2MNI/stderr.nipype-init).
2025-10-09 22:14:36 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:14:36 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-210_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-210_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-210_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:15:50 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:15:50 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:15:50 | INFO | niworkflows | Generating visual report
2025-10-09 22:16:08 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 124.870805s.
2025-10-09 22:16:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/post_n4".
2025-10-09 22:16:09 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:16:12 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.664901s.
2025-10-09 22:16:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/sp_mask".
2025-10-09 22:16:13 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:16:14 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.950498s.
2025-10-09 22:16:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/drift".
2025-10-09 22:16:15 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:16:16 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9982, 0.995, 1.0016, 0.9963, 0.9853, 0.9836, 0.9844, 1.0025.
2025-10-09 22:16:17 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.090375s.
2025-10-09 22:16:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/EPI2MNI".
2025-10-09 22:16:19 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:16:19 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:16:53 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/EPI2MNI/stderr.nipype-init).
2025-10-09 22:16:53 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:16:53 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-105_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-105_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-105_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:18:14 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:18:14 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:18:14 | INFO | niworkflows | Generating visual report
2025-10-09 22:18:33 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 133.580796s.
2025-10-09 22:18:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/post_n4".
2025-10-09 22:18:33 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:18:36 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.725614s.
2025-10-09 22:18:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/sp_mask".
2025-10-09 22:18:37 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:18:38 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.999398s.
2025-10-09 22:18:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/drift".
2025-10-09 22:18:39 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:18:40 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9965, 0.9865, 1.0036, 0.9964, 0.9911, 0.986, 0.9904, 1.0011.
2025-10-09 22:18:42 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.165764s.
2025-10-09 22:18:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/EPI2MNI".
2025-10-09 22:18:43 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:18:43 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:19:22 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/EPI2MNI/stderr.nipype-init).
2025-10-09 22:19:22 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:19:22 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-208_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-208_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-208_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:20:41 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:20:41 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:20:41 | INFO | niworkflows | Generating visual report
2025-10-09 22:21:01 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 137.370515s.
2025-10-09 22:21:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/final_masked".
2025-10-09 22:21:02 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:21:02 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.047804s.
2025-10-09 22:21:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/dwidenoise".
2025-10-09 22:21:03 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:21:28 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 24.822641s.
2025-10-09 22:21:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/ResampleSegmentation".
2025-10-09 22:21:30 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:21:34 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.362369s.
2025-10-09 22:21:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/final_masked".
2025-10-09 22:21:36 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:21:36 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.039295s.
2025-10-09 22:21:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/dwidenoise".
2025-10-09 22:21:38 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:22:02 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 24.79849s.
2025-10-09 22:22:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/ResampleSegmentation".
2025-10-09 22:22:04 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:22:08 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.729099s.
2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/final_masked".
2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.039019s.
2025-10-09 22:22:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/dwidenoise".
2025-10-09 22:22:12 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:22:56 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 44.413032s.
2025-10-09 22:22:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/ResampleSegmentation".
2025-10-09 22:22:58 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:23:02 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.17588s.
2025-10-09 22:23:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/final_masked".
2025-10-09 22:23:04 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:23:04 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.051962s.
2025-10-09 22:23:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/dwidenoise".
2025-10-09 22:23:06 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:23:50 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 44.077002s.
2025-10-09 22:23:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/ResampleSegmentation".
2025-10-09 22:23:52 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:23:56 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.001949s.
2025-10-09 22:23:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/dwimodel".
2025-10-09 22:23:58 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:24:02 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.446774s.
2025-10-09 22:24:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/7a8bf496b15870ccd305ffd15927445c4080cb81/estimate_sigma".
2025-10-09 22:24:04 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:04 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.041231s.
2025-10-09 22:24:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/get_wm".
2025-10-09 22:24:06 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:06 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.040746s.
2025-10-09 22:24:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/dwimodel".
2025-10-09 22:24:08 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:24:12 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.364093s.
2025-10-09 22:24:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/1ae2c9191f6074d5c7a349f65394d3562887ed8c/estimate_sigma".
2025-10-09 22:24:14 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:14 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.041646s.
2025-10-09 22:24:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/get_wm".
2025-10-09 22:24:16 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:16 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.041663s.
2025-10-09 22:24:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/dwimodel".
2025-10-09 22:24:18 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:24:22 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.908062s.
2025-10-09 22:24:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/d1fcdf3a2aabdfb95c213a6b28a150677d254951/estimate_sigma".
2025-10-09 22:24:24 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:24 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.041677s.
2025-10-09 22:24:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/get_wm".
2025-10-09 22:24:26 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:26 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.039757s.
2025-10-09 22:24:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/dwimodel".
2025-10-09 22:24:28 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:24:32 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.905139s.
2025-10-09 22:24:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/estimate_sigma".
2025-10-09 22:24:34 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:34 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.069555s.
2025-10-09 22:24:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/get_wm".
2025-10-09 22:24:36 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:36 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.040193s.
2025-10-09 22:24:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/cc_mask".
2025-10-09 22:24:38 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:24:38 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.64029s.
2025-10-09 22:24:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/mosaic_fa".
2025-10-09 22:24:40 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:24:41 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.519404s.
2025-10-09 22:24:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/mosaic_md".
2025-10-09 22:24:42 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:24:43 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.7768730000000001s.
2025-10-09 22:24:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/plot_heatmap".
2025-10-09 22:24:44 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:24:45 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.348586s.
2025-10-09 22:24:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/cc_mask".
2025-10-09 22:24:46 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:24:46 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.579664s.
2025-10-09 22:24:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/mosaic_fa".
2025-10-09 22:24:48 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:24:49 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.6625990000000002s.
2025-10-09 22:24:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/mosaic_md".
2025-10-09 22:24:50 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:24:51 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.914419s.
2025-10-09 22:24:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/plot_heatmap".
2025-10-09 22:24:54 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:24:55 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.291997s.
2025-10-09 22:24:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/cc_mask".
2025-10-09 22:24:56 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:24:56 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.597018s.
2025-10-09 22:24:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/mosaic_fa".
2025-10-09 22:24:58 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:24:59 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.782638s.
2025-10-09 22:25:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/mosaic_md".
2025-10-09 22:25:00 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:25:01 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.646131s.
2025-10-09 22:25:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/plot_heatmap".
2025-10-09 22:25:02 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:25:03 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.697846s.
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/cc_mask".
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.546979s.
2025-10-09 22:25:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/mosaic_fa".
2025-10-09 22:25:06 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:25:07 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.572263s.
2025-10-09 22:25:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/mosaic_md".
2025-10-09 22:25:08 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:25:10 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.9931s.
2025-10-09 22:25:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/plot_heatmap".
2025-10-09 22:25:12 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:25:13 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.349273s.
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/ds_report_fa".
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.00551s.
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/ds_report_md".
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005246s.
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/ds_report_hm".
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.00485s.
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/ds_report_fa".
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005459s.
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/ds_report_md".
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005356s.
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/ds_report_hm".
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.00541s.
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/ds_report_fa".
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005163s.
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/ds_report_md".
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005264s.
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/ds_report_hm".
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005442s.
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/ds_report_fa".
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005333s.
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/ds_report_md".
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005033s.
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/ds_report_hm".
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005311s.
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:25:26 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 10.810051s.
2025-10-09 22:25:28 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:25:28 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:25:38 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 10.792014s.
2025-10-09 22:25:40 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:25:40 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:25:51 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 11.03291s.
2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/6c2b82dbeea3461f25311b3e7530eea524785dec/Enhance".
2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.72265s.
2025-10-09 22:25:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/6c2b82dbeea3461f25311b3e7530eea524785dec/format_tpm_names".
2025-10-09 22:25:56 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:25:58 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 2.186538s.
2025-10-09 22:26:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/6c2b82dbeea3461f25311b3e7530eea524785dec/Grad".
2025-10-09 22:26:00 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 7.298927s.
2025-10-09 22:26:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/6c2b82dbeea3461f25311b3e7530eea524785dec/apply_mask".
2025-10-09 22:26:08 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:26:08 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.36395s.
2025-10-09 22:26:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/6c2b82dbeea3461f25311b3e7530eea524785dec/GradientThreshold".
2025-10-09 22:26:10 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:26:25 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 15.740622s.
2025-10-09 22:26:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/6c2b82dbeea3461f25311b3e7530eea524785dec/segmentation".
2025-10-09 22:26:26 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:28:16 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 110.359332s.
2025-10-09 22:28:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/6c2b82dbeea3461f25311b3e7530eea524785dec/ArtifactMask".
2025-10-09 22:28:18 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:28:25 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 7.00916s.
2025-10-09 22:28:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/PlotHeadmask".
2025-10-09 22:28:26 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:28:29 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 3.530949s.
2025-10-09 22:28:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/6c2b82dbeea3461f25311b3e7530eea524785dec/harmonize".
2025-10-09 22:28:30 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:28:31 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 1.204974s.
2025-10-09 22:28:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/PlotSegmentation".
2025-10-09 22:28:32 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:28:36 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 4.060865s.
2025-10-09 22:28:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/6c2b82dbeea3461f25311b3e7530eea524785dec/provenance".
2025-10-09 22:28:38 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:28:38 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.102622s.
2025-10-09 22:28:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/6c2b82dbeea3461f25311b3e7530eea524785dec/ComputeQI2".
2025-10-09 22:28:38 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:28:38 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.327791s.
2025-10-09 22:28:38 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:28:38 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/6c2b82dbeea3461f25311b3e7530eea524785dec/ComputeQI2)
2025-10-09 22:28:38 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=127) crashed: /var/lib/condor/execute/dir_3950163/ds/logs/crash-20251009-222838-fhoffstaedter-ComputeQI2.a0-7008961c-8c6f-4fee-ae4b-71ef4c272b76.txt
get(ok): sourcedata/raw/sub-cIVs048/ses-s1Bx1/anat/sub-cIVs048_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs048/ses-s1Bx1/dwi/sub-cIVs048_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-106_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs048/ses-s1Bx1/dwi/sub-cIVs048_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-209_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs048/ses-s1Bx1/dwi/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-107_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs048/ses-s1Bx1/dwi/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-210_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs048/ses-s1Bx1/dwi/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-105_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs048/ses-s1Bx1/dwi/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-208_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs048 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_3950163/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 9)
run (error: 1)
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