install(ok): /var/lib/condor/execute/dir_3950163/ds (dataset) install(ok): /var/lib/condor/execute/dir_3950163/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3950163/ds/sourcedata/raw] ------------------------------------------------------------------ Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826 ---------------------------------------------------------------- NOTICE Copyright © The NiPreps Developers. This product includes software developed by the NiPreps Community (https://nipreps.org/). Portions of this software were developed at the Department of Psychology at Stanford University, Stanford, CA, US. This software contains code ultimately derived from the PCP Quality Assessment Protocol (QAP; http://preprocessed-connectomes-project.org/quality-assessment-protocol) by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman. This software is also distributed as a Docker container image. The bootstrapping file for the image ("Dockerfile") is licensed under the MIT License. ---------------------------------------------------------------- * BIDS dataset path: /var/lib/condor/execute/dir_3950163/ds/sourcedata/raw. * Output folder: .. * Analysis levels: ['participant']. ------------------------------------------------------------------ 2025-10-09 21:57:03 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'... 2025-10-09 21:57:03 | IMPORTANT | mriqc | File size ('t1w'): 0.00|0.00 GB [maximum|average]. 2025-10-09 21:57:03 | IMPORTANT | mriqc | Extracting metadata and entities for 6 input runs of modality 'dwi'... 2025-10-09 21:57:03 | WARNING | nipype.workflow | 2 cannot be processed (too short or too long) 2025-10-09 21:57:03 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average]. 2025-10-09 21:57:03 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215701_45f07de5-9843-470d-88b6-163469698452.toml. 2025-10-09 21:57:08 | INFO | matplotlib.font_manager | generated new fontManager 2025-10-09 21:57:09 | IMPORTANT | mriqc | Building MRIQC's workflows... 2025-10-09 21:57:09 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 4 NIfTI files.. 2025-10-09 21:57:10 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files.. 2025-10-09 21:57:14 | IMPORTANT | mriqc | Workflow building finished (exit code 0). 2025-10-09 21:57:19 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring'] 2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/6c2b82dbeea3461f25311b3e7530eea524785dec/conform". 2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Executing "conform"  2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.285538s. 2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/load_bmat". 2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Executing "load_bmat"  2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.177134s. 2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/sanitize". 2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Executing "sanitize"  2025-10-09 21:57:24 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.753765s. 2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/7a8bf496b15870ccd305ffd15927445c4080cb81/provenance". 2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Executing "provenance"  2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.019077s. 2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/load_bmat". 2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Executing "load_bmat"  2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.021724s. 2025-10-09 21:57:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/sanitize". 2025-10-09 21:57:27 | INFO | nipype.workflow | [Node] Executing "sanitize"  2025-10-09 21:57:28 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.79047s. 2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/1ae2c9191f6074d5c7a349f65394d3562887ed8c/provenance". 2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Executing "provenance"  2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.019109s. 2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/load_bmat". 2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Executing "load_bmat"  2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023585s. 2025-10-09 21:57:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/sanitize". 2025-10-09 21:57:31 | INFO | nipype.workflow | [Node] Executing "sanitize"  2025-10-09 21:57:32 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.046122s. 2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/d1fcdf3a2aabdfb95c213a6b28a150677d254951/provenance". 2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Executing "provenance"  2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.024258s. 2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/load_bmat". 2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Executing "load_bmat"  2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.022729s. 2025-10-09 21:57:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/sanitize". 2025-10-09 21:57:35 | INFO | nipype.workflow | [Node] Executing "sanitize"  2025-10-09 21:57:36 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.029938s. 2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/provenance". 2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Executing "provenance"  2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.024299s. 2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/pre_clip". 2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Executing "pre_clip"  2025-10-09 21:57:47 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 10.343284s. 2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/6c2b82dbeea3461f25311b3e7530eea524785dec/RotationMask". 2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Executing "RotationMask"  2025-10-09 21:57:50 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 1.148104s. 2025-10-09 21:57:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/PlotMosaicNoise". 2025-10-09 21:57:51 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise"  2025-10-09 21:57:56 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 5.35786s. 2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/shells". 2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Executing "shells"  2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000719s. 2025-10-09 21:57:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/piesno". 2025-10-09 21:57:59 | INFO | nipype.workflow | [Node] Executing "piesno"  2025-10-09 21:58:00 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.944864s. 2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/shells". 2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Executing "shells"  2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000702s. 2025-10-09 21:58:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/piesno". 2025-10-09 21:58:03 | INFO | nipype.workflow | [Node] Executing "piesno"  2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.951093s. 2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/shells". 2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Executing "shells"  2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000768s. 2025-10-09 21:58:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/piesno". 2025-10-09 21:58:07 | INFO | nipype.workflow | [Node] Executing "piesno"  2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 2.103784s. 2025-10-09 21:58:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/shells". 2025-10-09 21:58:11 | INFO | nipype.workflow | [Node] Executing "shells"  2025-10-09 21:58:11 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000831s. 2025-10-09 21:58:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/piesno". 2025-10-09 21:58:13 | INFO | nipype.workflow | [Node] Executing "piesno"  2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.387254s. 2025-10-09 21:58:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/pre_n4". 2025-10-09 21:58:15 | INFO | nipype.workflow | [Node] Executing "pre_n4"  2025-10-09 22:00:27 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 132.073761s. 2025-10-09 22:00:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/ds_report_background". 2025-10-09 22:00:29 | INFO | nipype.workflow | [Node] Executing "ds_report_background"  2025-10-09 22:00:29 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.009447s. 2025-10-09 22:00:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/dwi_ref". 2025-10-09 22:00:29 | INFO | nipype.workflow | [Node] Executing "dwi_ref"  2025-10-09 22:00:30 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 1.095442s. 2025-10-09 22:00:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/get_lowb". 2025-10-09 22:00:31 | INFO | nipype.workflow | [Node] Executing "get_lowb"  2025-10-09 22:00:31 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.344199s. 2025-10-09 22:00:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/dwi_ref". 2025-10-09 22:00:33 | INFO | nipype.workflow | [Node] Executing "dwi_ref"  2025-10-09 22:00:33 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.529285s. 2025-10-09 22:00:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/get_lowb". 2025-10-09 22:00:35 | INFO | nipype.workflow | [Node] Executing "get_lowb"  2025-10-09 22:00:35 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.332866s. 2025-10-09 22:00:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/dwi_ref". 2025-10-09 22:00:37 | INFO | nipype.workflow | [Node] Executing "dwi_ref"  2025-10-09 22:00:38 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.936836s. 2025-10-09 22:00:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/get_lowb". 2025-10-09 22:00:39 | INFO | nipype.workflow | [Node] Executing "get_lowb"  2025-10-09 22:00:39 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.469265s. 2025-10-09 22:00:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/dwi_ref". 2025-10-09 22:00:41 | INFO | nipype.workflow | [Node] Executing "dwi_ref"  2025-10-09 22:00:42 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.796984s. 2025-10-09 22:00:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/get_lowb". 2025-10-09 22:00:43 | INFO | nipype.workflow | [Node] Executing "get_lowb"  2025-10-09 22:00:44 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.863689s. 2025-10-09 22:00:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/synthstrip". 2025-10-09 22:00:45 | INFO | nipype.workflow | [Node] Executing "synthstrip"  2025-10-09 22:02:05 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 79.68271s. 2025-10-09 22:02:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/pre_clip". 2025-10-09 22:02:05 | INFO | nipype.workflow | [Node] Executing "pre_clip"  2025-10-09 22:02:06 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.7774s. 2025-10-09 22:02:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/SharpenEPI". 2025-10-09 22:02:07 | INFO | nipype.workflow | [Node] Executing "SharpenEPI"  2025-10-09 22:02:15 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.323765999999999s. 2025-10-09 22:02:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/hmc_b0". 2025-10-09 22:02:17 | INFO | nipype.workflow | [Node] Executing "hmc_b0"  2025-10-09 22:02:40 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 23.22642s. 2025-10-09 22:02:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/pre_clip". 2025-10-09 22:02:41 | INFO | nipype.workflow | [Node] Executing "pre_clip"  2025-10-09 22:02:42 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.715411s. 2025-10-09 22:02:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/SharpenEPI". 2025-10-09 22:02:43 | INFO | nipype.workflow | [Node] Executing "SharpenEPI"  2025-10-09 22:02:51 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.256514s. 2025-10-09 22:02:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/hmc_b0". 2025-10-09 22:02:53 | INFO | nipype.workflow | [Node] Executing "hmc_b0"  2025-10-09 22:03:16 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 22.876319s. 2025-10-09 22:03:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/pre_clip". 2025-10-09 22:03:17 | INFO | nipype.workflow | [Node] Executing "pre_clip"  2025-10-09 22:03:18 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.707434s. 2025-10-09 22:03:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/SharpenEPI". 2025-10-09 22:03:19 | INFO | nipype.workflow | [Node] Executing "SharpenEPI"  2025-10-09 22:03:27 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.156906s. 2025-10-09 22:03:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/hmc_b0". 2025-10-09 22:03:29 | INFO | nipype.workflow | [Node] Executing "hmc_b0"  2025-10-09 22:03:57 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 28.384103s. 2025-10-09 22:03:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/pre_clip". 2025-10-09 22:03:59 | INFO | nipype.workflow | [Node] Executing "pre_clip"  2025-10-09 22:04:00 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.64499s. 2025-10-09 22:04:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/SharpenEPI". 2025-10-09 22:04:01 | INFO | nipype.workflow | [Node] Executing "SharpenEPI"  2025-10-09 22:04:09 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.849837s. 2025-10-09 22:04:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/hmc_b0". 2025-10-09 22:04:09 | INFO | nipype.workflow | [Node] Executing "hmc_b0"  2025-10-09 22:04:36 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 27.025352s. 2025-10-09 22:04:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/post_n4". 2025-10-09 22:04:37 | INFO | nipype.workflow | [Node] Executing "post_n4"  2025-10-09 22:05:06 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 29.300228s. 2025-10-09 22:05:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/6c2b82dbeea3461f25311b3e7530eea524785dec/smoothness". 2025-10-09 22:05:07 | INFO | nipype.workflow | [Node] Executing "smoothness"  2025-10-09 22:05:13 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 5.6968689999999995s. 2025-10-09 22:05:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/PlotMosaicZoomed". 2025-10-09 22:05:13 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed"  2025-10-09 22:05:18 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 5.410993s. 2025-10-09 22:05:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/PlotBrainmask". 2025-10-09 22:05:19 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask"  2025-10-09 22:05:23 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 4.052395s. 2025-10-09 22:05:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/pre_n4". 2025-10-09 22:05:25 | INFO | nipype.workflow | [Node] Executing "pre_n4"  2025-10-09 22:05:33 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.987282s. 2025-10-09 22:05:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/pre_n4". 2025-10-09 22:05:35 | INFO | nipype.workflow | [Node] Executing "pre_n4"  2025-10-09 22:05:43 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.89666s. 2025-10-09 22:05:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/pre_n4". 2025-10-09 22:05:45 | INFO | nipype.workflow | [Node] Executing "pre_n4"  2025-10-09 22:05:53 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.001357s. 2025-10-09 22:05:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/pre_n4". 2025-10-09 22:05:55 | INFO | nipype.workflow | [Node] Executing "pre_n4"  2025-10-09 22:06:03 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.907206s. 2025-10-09 22:06:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/final_masked". 2025-10-09 22:06:05 | INFO | nipype.workflow | [Node] Executing "final_masked"  2025-10-09 22:06:05 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.347375s. 2025-10-09 22:06:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization". 2025-10-09 22:06:07 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization"  2025-10-09 22:06:08 | INFO | niworkflows | Estimating initial transform using AffineInitializer 2025-10-09 22:07:30 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/stderr.nipype-init). 2025-10-09 22:07:30 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json. 2025-10-09 22:07:30 | INFO | niworkflows | Retry #1, commandline: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1 2025-10-09 22:07:49 | INFO | niworkflows | Successful spatial normalization (retry #1). 2025-10-09 22:07:51 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images 2025-10-09 22:07:51 | INFO | niworkflows | Generating visual report 2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 123.776413s. 2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/ds_report_zoomed". 2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed"  2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.005662s. 2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/ds_report_bmask". 2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask"  2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.005535s. 2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/synthstrip". 2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Executing "synthstrip"  2025-10-09 22:08:57 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 46.039027s. 2025-10-09 22:08:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/synthstrip". 2025-10-09 22:08:59 | INFO | nipype.workflow | [Node] Executing "synthstrip"  2025-10-09 22:09:47 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 48.26904s. 2025-10-09 22:09:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/synthstrip". 2025-10-09 22:09:49 | INFO | nipype.workflow | [Node] Executing "synthstrip"  2025-10-09 22:10:41 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 51.719745s. 2025-10-09 22:10:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/synthstrip". 2025-10-09 22:10:41 | INFO | nipype.workflow | [Node] Executing "synthstrip"  2025-10-09 22:11:30 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 49.151902s. 2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/ds_report_norm". 2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Executing "ds_report_norm"  2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005684s. 2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/post_n4". 2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Executing "post_n4"  2025-10-09 22:11:34 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.860639s. 2025-10-09 22:11:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/sp_mask". 2025-10-09 22:11:35 | INFO | nipype.workflow | [Node] Executing "sp_mask"  2025-10-09 22:11:36 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.902477s. 2025-10-09 22:11:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/drift". 2025-10-09 22:11:37 | INFO | nipype.workflow | [Node] Executing "drift"  2025-10-09 22:11:37 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9989, 0.9937, 1.0031, 0.9981, 0.9922, 0.9868. 2025-10-09 22:11:39 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.765867s. 2025-10-09 22:11:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/EPI2MNI". 2025-10-09 22:11:39 | INFO | nipype.workflow | [Node] Executing "EPI2MNI"  2025-10-09 22:11:39 | INFO | niworkflows | Estimating initial transform using AffineInitializer 2025-10-09 22:12:17 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/EPI2MNI/stderr.nipype-init). 2025-10-09 22:12:17 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json. 2025-10-09 22:12:17 | INFO | niworkflows | Retry #1, commandline: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-107_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-107_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-107_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1 2025-10-09 22:13:36 | INFO | niworkflows | Successful spatial normalization (retry #1). 2025-10-09 22:13:36 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/EPI2MNI/epi_to_mni_Warped.nii.gz) images 2025-10-09 22:13:36 | INFO | niworkflows | Generating visual report 2025-10-09 22:13:55 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 135.588045s. 2025-10-09 22:13:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/post_n4". 2025-10-09 22:13:55 | INFO | nipype.workflow | [Node] Executing "post_n4"  2025-10-09 22:13:58 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.683062s. 2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/sp_mask". 2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Executing "sp_mask"  2025-10-09 22:14:00 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.621714s. 2025-10-09 22:14:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/drift". 2025-10-09 22:14:01 | INFO | nipype.workflow | [Node] Executing "drift"  2025-10-09 22:14:01 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0208, 0.9956, 1.0244, 1.0209, 1.0171, 1.0179. 2025-10-09 22:14:03 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.600803s. 2025-10-09 22:14:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/EPI2MNI". 2025-10-09 22:14:03 | INFO | nipype.workflow | [Node] Executing "EPI2MNI"  2025-10-09 22:14:03 | INFO | niworkflows | Estimating initial transform using AffineInitializer 2025-10-09 22:14:36 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/EPI2MNI/stderr.nipype-init). 2025-10-09 22:14:36 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json. 2025-10-09 22:14:36 | INFO | niworkflows | Retry #1, commandline: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-210_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-210_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-210_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1 2025-10-09 22:15:50 | INFO | niworkflows | Successful spatial normalization (retry #1). 2025-10-09 22:15:50 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/EPI2MNI/epi_to_mni_Warped.nii.gz) images 2025-10-09 22:15:50 | INFO | niworkflows | Generating visual report 2025-10-09 22:16:08 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 124.870805s. 2025-10-09 22:16:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/post_n4". 2025-10-09 22:16:09 | INFO | nipype.workflow | [Node] Executing "post_n4"  2025-10-09 22:16:12 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.664901s. 2025-10-09 22:16:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/sp_mask". 2025-10-09 22:16:13 | INFO | nipype.workflow | [Node] Executing "sp_mask"  2025-10-09 22:16:14 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.950498s. 2025-10-09 22:16:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/drift". 2025-10-09 22:16:15 | INFO | nipype.workflow | [Node] Executing "drift"  2025-10-09 22:16:16 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9982, 0.995, 1.0016, 0.9963, 0.9853, 0.9836, 0.9844, 1.0025. 2025-10-09 22:16:17 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.090375s. 2025-10-09 22:16:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/EPI2MNI". 2025-10-09 22:16:19 | INFO | nipype.workflow | [Node] Executing "EPI2MNI"  2025-10-09 22:16:19 | INFO | niworkflows | Estimating initial transform using AffineInitializer 2025-10-09 22:16:53 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/EPI2MNI/stderr.nipype-init). 2025-10-09 22:16:53 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json. 2025-10-09 22:16:53 | INFO | niworkflows | Retry #1, commandline: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-105_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-105_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-105_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1 2025-10-09 22:18:14 | INFO | niworkflows | Successful spatial normalization (retry #1). 2025-10-09 22:18:14 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/EPI2MNI/epi_to_mni_Warped.nii.gz) images 2025-10-09 22:18:14 | INFO | niworkflows | Generating visual report 2025-10-09 22:18:33 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 133.580796s. 2025-10-09 22:18:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/post_n4". 2025-10-09 22:18:33 | INFO | nipype.workflow | [Node] Executing "post_n4"  2025-10-09 22:18:36 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.725614s. 2025-10-09 22:18:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/sp_mask". 2025-10-09 22:18:37 | INFO | nipype.workflow | [Node] Executing "sp_mask"  2025-10-09 22:18:38 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.999398s. 2025-10-09 22:18:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/drift". 2025-10-09 22:18:39 | INFO | nipype.workflow | [Node] Executing "drift"  2025-10-09 22:18:40 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9965, 0.9865, 1.0036, 0.9964, 0.9911, 0.986, 0.9904, 1.0011. 2025-10-09 22:18:42 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.165764s. 2025-10-09 22:18:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/EPI2MNI". 2025-10-09 22:18:43 | INFO | nipype.workflow | [Node] Executing "EPI2MNI"  2025-10-09 22:18:43 | INFO | niworkflows | Estimating initial transform using AffineInitializer 2025-10-09 22:19:22 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/EPI2MNI/stderr.nipype-init). 2025-10-09 22:19:22 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json. 2025-10-09 22:19:22 | INFO | niworkflows | Retry #1, commandline: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-208_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-208_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/SharpenEPI/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-208_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1 2025-10-09 22:20:41 | INFO | niworkflows | Successful spatial normalization (retry #1). 2025-10-09 22:20:41 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/EPI2MNI/epi_to_mni_Warped.nii.gz) images 2025-10-09 22:20:41 | INFO | niworkflows | Generating visual report 2025-10-09 22:21:01 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 137.370515s. 2025-10-09 22:21:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/final_masked". 2025-10-09 22:21:02 | INFO | nipype.workflow | [Node] Executing "final_masked"  2025-10-09 22:21:02 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.047804s. 2025-10-09 22:21:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/dwidenoise". 2025-10-09 22:21:03 | INFO | nipype.workflow | [Node] Executing "dwidenoise"  2025-10-09 22:21:28 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 24.822641s. 2025-10-09 22:21:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7a8bf496b15870ccd305ffd15927445c4080cb81/ResampleSegmentation". 2025-10-09 22:21:30 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation"  2025-10-09 22:21:34 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.362369s. 2025-10-09 22:21:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/final_masked". 2025-10-09 22:21:36 | INFO | nipype.workflow | [Node] Executing "final_masked"  2025-10-09 22:21:36 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.039295s. 2025-10-09 22:21:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/dwidenoise". 2025-10-09 22:21:38 | INFO | nipype.workflow | [Node] Executing "dwidenoise"  2025-10-09 22:22:02 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 24.79849s. 2025-10-09 22:22:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ae2c9191f6074d5c7a349f65394d3562887ed8c/ResampleSegmentation". 2025-10-09 22:22:04 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation"  2025-10-09 22:22:08 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.729099s. 2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/final_masked". 2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Executing "final_masked"  2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.039019s. 2025-10-09 22:22:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/dwidenoise". 2025-10-09 22:22:12 | INFO | nipype.workflow | [Node] Executing "dwidenoise"  2025-10-09 22:22:56 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 44.413032s. 2025-10-09 22:22:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d1fcdf3a2aabdfb95c213a6b28a150677d254951/ResampleSegmentation". 2025-10-09 22:22:58 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation"  2025-10-09 22:23:02 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.17588s. 2025-10-09 22:23:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/final_masked". 2025-10-09 22:23:04 | INFO | nipype.workflow | [Node] Executing "final_masked"  2025-10-09 22:23:04 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.051962s. 2025-10-09 22:23:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/dwidenoise". 2025-10-09 22:23:06 | INFO | nipype.workflow | [Node] Executing "dwidenoise"  2025-10-09 22:23:50 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 44.077002s. 2025-10-09 22:23:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/ResampleSegmentation". 2025-10-09 22:23:52 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation"  2025-10-09 22:23:56 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.001949s. 2025-10-09 22:23:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/dwimodel". 2025-10-09 22:23:58 | INFO | nipype.workflow | [Node] Executing "dwimodel"  2025-10-09 22:24:02 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.446774s. 2025-10-09 22:24:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/7a8bf496b15870ccd305ffd15927445c4080cb81/estimate_sigma". 2025-10-09 22:24:04 | INFO | nipype.workflow | [Node] Executing "estimate_sigma"  2025-10-09 22:24:04 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.041231s. 2025-10-09 22:24:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/get_wm". 2025-10-09 22:24:06 | INFO | nipype.workflow | [Node] Executing "get_wm"  2025-10-09 22:24:06 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.040746s. 2025-10-09 22:24:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/dwimodel". 2025-10-09 22:24:08 | INFO | nipype.workflow | [Node] Executing "dwimodel"  2025-10-09 22:24:12 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.364093s. 2025-10-09 22:24:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/1ae2c9191f6074d5c7a349f65394d3562887ed8c/estimate_sigma". 2025-10-09 22:24:14 | INFO | nipype.workflow | [Node] Executing "estimate_sigma"  2025-10-09 22:24:14 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.041646s. 2025-10-09 22:24:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/get_wm". 2025-10-09 22:24:16 | INFO | nipype.workflow | [Node] Executing "get_wm"  2025-10-09 22:24:16 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.041663s. 2025-10-09 22:24:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/dwimodel". 2025-10-09 22:24:18 | INFO | nipype.workflow | [Node] Executing "dwimodel"  2025-10-09 22:24:22 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.908062s. 2025-10-09 22:24:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/d1fcdf3a2aabdfb95c213a6b28a150677d254951/estimate_sigma". 2025-10-09 22:24:24 | INFO | nipype.workflow | [Node] Executing "estimate_sigma"  2025-10-09 22:24:24 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.041677s. 2025-10-09 22:24:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/get_wm". 2025-10-09 22:24:26 | INFO | nipype.workflow | [Node] Executing "get_wm"  2025-10-09 22:24:26 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.039757s. 2025-10-09 22:24:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/dwimodel". 2025-10-09 22:24:28 | INFO | nipype.workflow | [Node] Executing "dwimodel"  2025-10-09 22:24:32 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.905139s. 2025-10-09 22:24:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/estimate_sigma". 2025-10-09 22:24:34 | INFO | nipype.workflow | [Node] Executing "estimate_sigma"  2025-10-09 22:24:34 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.069555s. 2025-10-09 22:24:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/get_wm". 2025-10-09 22:24:36 | INFO | nipype.workflow | [Node] Executing "get_wm"  2025-10-09 22:24:36 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.040193s. 2025-10-09 22:24:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/7a8bf496b15870ccd305ffd15927445c4080cb81/cc_mask". 2025-10-09 22:24:38 | INFO | nipype.workflow | [Node] Executing "cc_mask"  2025-10-09 22:24:38 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.64029s. 2025-10-09 22:24:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/mosaic_fa". 2025-10-09 22:24:40 | INFO | nipype.workflow | [Node] Executing "mosaic_fa"  2025-10-09 22:24:41 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.519404s. 2025-10-09 22:24:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/mosaic_md". 2025-10-09 22:24:42 | INFO | nipype.workflow | [Node] Executing "mosaic_md"  2025-10-09 22:24:43 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.7768730000000001s. 2025-10-09 22:24:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/plot_heatmap". 2025-10-09 22:24:44 | INFO | nipype.workflow | [Node] Executing "plot_heatmap"  2025-10-09 22:24:45 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.348586s. 2025-10-09 22:24:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/1ae2c9191f6074d5c7a349f65394d3562887ed8c/cc_mask". 2025-10-09 22:24:46 | INFO | nipype.workflow | [Node] Executing "cc_mask"  2025-10-09 22:24:46 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.579664s. 2025-10-09 22:24:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/mosaic_fa". 2025-10-09 22:24:48 | INFO | nipype.workflow | [Node] Executing "mosaic_fa"  2025-10-09 22:24:49 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.6625990000000002s. 2025-10-09 22:24:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/mosaic_md". 2025-10-09 22:24:50 | INFO | nipype.workflow | [Node] Executing "mosaic_md"  2025-10-09 22:24:51 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.914419s. 2025-10-09 22:24:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/plot_heatmap". 2025-10-09 22:24:54 | INFO | nipype.workflow | [Node] Executing "plot_heatmap"  2025-10-09 22:24:55 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.291997s. 2025-10-09 22:24:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/d1fcdf3a2aabdfb95c213a6b28a150677d254951/cc_mask". 2025-10-09 22:24:56 | INFO | nipype.workflow | [Node] Executing "cc_mask"  2025-10-09 22:24:56 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.597018s. 2025-10-09 22:24:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/mosaic_fa". 2025-10-09 22:24:58 | INFO | nipype.workflow | [Node] Executing "mosaic_fa"  2025-10-09 22:24:59 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.782638s. 2025-10-09 22:25:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/mosaic_md". 2025-10-09 22:25:00 | INFO | nipype.workflow | [Node] Executing "mosaic_md"  2025-10-09 22:25:01 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.646131s. 2025-10-09 22:25:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/plot_heatmap". 2025-10-09 22:25:02 | INFO | nipype.workflow | [Node] Executing "plot_heatmap"  2025-10-09 22:25:03 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.697846s. 2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/cc_mask". 2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Executing "cc_mask"  2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.546979s. 2025-10-09 22:25:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/mosaic_fa". 2025-10-09 22:25:06 | INFO | nipype.workflow | [Node] Executing "mosaic_fa"  2025-10-09 22:25:07 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.572263s. 2025-10-09 22:25:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/mosaic_md". 2025-10-09 22:25:08 | INFO | nipype.workflow | [Node] Executing "mosaic_md"  2025-10-09 22:25:10 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.9931s. 2025-10-09 22:25:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/plot_heatmap". 2025-10-09 22:25:12 | INFO | nipype.workflow | [Node] Executing "plot_heatmap"  2025-10-09 22:25:13 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.349273s. 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/ds_report_fa". 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_fa"  2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.00551s. 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/ds_report_md". 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_md"  2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005246s. 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7a8bf496b15870ccd305ffd15927445c4080cb81/ds_report_hm". 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_hm"  2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.00485s. 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/ds_report_fa". 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_fa"  2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005459s. 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/ds_report_md". 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_md"  2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005356s. 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ae2c9191f6074d5c7a349f65394d3562887ed8c/ds_report_hm". 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_hm"  2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.00541s. 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/ds_report_fa". 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_fa"  2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005163s. 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/ds_report_md". 2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Executing "ds_report_md"  2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005264s. 2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d1fcdf3a2aabdfb95c213a6b28a150677d254951/ds_report_hm". 2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Executing "ds_report_hm"  2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005442s. 2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/ds_report_fa". 2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Executing "ds_report_fa"  2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005333s. 2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/ds_report_md". 2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Executing "ds_report_md"  2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005033s. 2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/08f3f12bcfc6521bbc6f03bcbbc9437d1723cd09/ds_report_hm". 2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Executing "ds_report_hm"  2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005311s. 2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/tpms_std2t1w/mapflow/_tpms_std2t1w0". 2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0"  2025-10-09 22:25:26 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 10.810051s. 2025-10-09 22:25:28 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/tpms_std2t1w/mapflow/_tpms_std2t1w1". 2025-10-09 22:25:28 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1"  2025-10-09 22:25:38 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 10.792014s. 2025-10-09 22:25:40 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/tpms_std2t1w/mapflow/_tpms_std2t1w2". 2025-10-09 22:25:40 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2"  2025-10-09 22:25:51 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 11.03291s. 2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/tpms_std2t1w/mapflow/_tpms_std2t1w0". 2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs 2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached. 2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/tpms_std2t1w/mapflow/_tpms_std2t1w1". 2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs 2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached. 2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6c2b82dbeea3461f25311b3e7530eea524785dec/tpms_std2t1w/mapflow/_tpms_std2t1w2". 2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs 2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached. 2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/6c2b82dbeea3461f25311b3e7530eea524785dec/Enhance". 2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] Executing "Enhance"  2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.72265s. 2025-10-09 22:25:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/6c2b82dbeea3461f25311b3e7530eea524785dec/format_tpm_names". 2025-10-09 22:25:56 | INFO | nipype.workflow | [Node] Executing "format_tpm_names"  2025-10-09 22:25:58 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 2.186538s. 2025-10-09 22:26:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/6c2b82dbeea3461f25311b3e7530eea524785dec/Grad". 2025-10-09 22:26:00 | INFO | nipype.workflow | [Node] Executing "Grad"  2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 7.298927s. 2025-10-09 22:26:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/6c2b82dbeea3461f25311b3e7530eea524785dec/apply_mask". 2025-10-09 22:26:08 | INFO | nipype.workflow | [Node] Executing "apply_mask"  2025-10-09 22:26:08 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.36395s. 2025-10-09 22:26:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/6c2b82dbeea3461f25311b3e7530eea524785dec/GradientThreshold". 2025-10-09 22:26:10 | INFO | nipype.workflow | [Node] Executing "GradientThreshold"  2025-10-09 22:26:25 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 15.740622s. 2025-10-09 22:26:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/6c2b82dbeea3461f25311b3e7530eea524785dec/segmentation". 2025-10-09 22:26:26 | INFO | nipype.workflow | [Node] Executing "segmentation"  2025-10-09 22:28:16 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 110.359332s. 2025-10-09 22:28:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/6c2b82dbeea3461f25311b3e7530eea524785dec/ArtifactMask". 2025-10-09 22:28:18 | INFO | nipype.workflow | [Node] Executing "ArtifactMask"  2025-10-09 22:28:25 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 7.00916s. 2025-10-09 22:28:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/PlotHeadmask". 2025-10-09 22:28:26 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask"  2025-10-09 22:28:29 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 3.530949s. 2025-10-09 22:28:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/6c2b82dbeea3461f25311b3e7530eea524785dec/harmonize". 2025-10-09 22:28:30 | INFO | nipype.workflow | [Node] Executing "harmonize"  2025-10-09 22:28:31 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 1.204974s. 2025-10-09 22:28:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6c2b82dbeea3461f25311b3e7530eea524785dec/PlotSegmentation". 2025-10-09 22:28:32 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation"  2025-10-09 22:28:36 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 4.060865s. 2025-10-09 22:28:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/6c2b82dbeea3461f25311b3e7530eea524785dec/provenance". 2025-10-09 22:28:38 | INFO | nipype.workflow | [Node] Executing "provenance"  2025-10-09 22:28:38 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.102622s. 2025-10-09 22:28:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/6c2b82dbeea3461f25311b3e7530eea524785dec/ComputeQI2". 2025-10-09 22:28:38 | INFO | nipype.workflow | [Node] Executing "ComputeQI2"  2025-10-09 22:28:38 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.327791s. 2025-10-09 22:28:38 | WARNING | nipype.workflow | Storing result file without outputs 2025-10-09 22:28:38 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/6c2b82dbeea3461f25311b3e7530eea524785dec/ComputeQI2) 2025-10-09 22:28:38 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=127) crashed: /var/lib/condor/execute/dir_3950163/ds/logs/crash-20251009-222838-fhoffstaedter-ComputeQI2.a0-7008961c-8c6f-4fee-ae4b-71ef4c272b76.txt get(ok): sourcedata/raw/sub-cIVs048/ses-s1Bx1/anat/sub-cIVs048_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...] get(ok): sourcedata/raw/sub-cIVs048/ses-s1Bx1/dwi/sub-cIVs048_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-106_dwi.nii.gz (file) [from s3-PUBLIC...] get(ok): sourcedata/raw/sub-cIVs048/ses-s1Bx1/dwi/sub-cIVs048_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-209_dwi.nii.gz (file) [from s3-PUBLIC...] get(ok): sourcedata/raw/sub-cIVs048/ses-s1Bx1/dwi/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-107_dwi.nii.gz (file) [from s3-PUBLIC...] get(ok): sourcedata/raw/sub-cIVs048/ses-s1Bx1/dwi/sub-cIVs048_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-210_dwi.nii.gz (file) [from s3-PUBLIC...] get(ok): sourcedata/raw/sub-cIVs048/ses-s1Bx1/dwi/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-105_dwi.nii.gz (file) [from s3-PUBLIC...] get(ok): sourcedata/raw/sub-cIVs048/ses-s1Bx1/dwi/sub-cIVs048_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-208_dwi.nii.gz (file) [from s3-PUBLIC...] get(ok): sourcedata/raw/sub-cIVs048 (directory) get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...] run(error): /var/lib/condor/execute/dir_3950163/ds (dataset) [./code/containers/scripts/singularity_cm...] action summary: get (notneeded: 4, ok: 9) run (error: 1)