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ds003416-mriqc/logs/sub-cIVs040_10066414.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

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install(ok): /var/lib/condor/execute/dir_1898337/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1898337/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1898337/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_1898337/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:57:38 | IMPORTANT | mriqc | Extracting metadata and entities for 2 input runs of modality 't1w'...
2025-10-09 21:57:38 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.00 GB [maximum|average].
2025-10-09 21:57:38 | IMPORTANT | mriqc | Extracting metadata and entities for 12 input runs of modality 'dwi'...
2025-10-09 21:57:38 | WARNING | nipype.workflow | 4 cannot be processed (too short or too long)
2025-10-09 21:57:38 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:57:38 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215737_76b5cc9d-73c0-47a8-86b7-71839ac8d77f.toml.
2025-10-09 21:57:42 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:57:43 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:57:43 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 8 NIfTI files..
2025-10-09 21:57:44 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 2 NIfTI files..
2025-10-09 21:57:48 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:57:51 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:57:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/05c9e737d70a29e7defc422b224cf0bf64ea9192/conform".
2025-10-09 21:57:52 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:57:52 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.257374s.
2025-10-09 21:57:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/conform".
2025-10-09 21:57:54 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:57:54 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.638324s.
2025-10-09 21:57:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/5386b75365649bda85f881e04bc7b61882502cda/load_bmat".
2025-10-09 21:57:56 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:56 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.146675s.
2025-10-09 21:57:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/5386b75365649bda85f881e04bc7b61882502cda/sanitize".
2025-10-09 21:57:58 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:58 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.024196s.
2025-10-09 21:58:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/5386b75365649bda85f881e04bc7b61882502cda/provenance".
2025-10-09 21:58:00 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:00 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.015715s.
2025-10-09 21:58:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/40283487c2f5ac959710890b6005f326145780fa/load_bmat".
2025-10-09 21:58:00 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:00 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.020641s.
2025-10-09 21:58:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/40283487c2f5ac959710890b6005f326145780fa/sanitize".
2025-10-09 21:58:02 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:02 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.018728s.
2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/40283487c2f5ac959710890b6005f326145780fa/provenance".
2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.015644s.
2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/load_bmat".
2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.021526s.
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/sanitize".
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.018659s.
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/provenance".
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.020567s.
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/9b97ef91266292d7468e71cfacf20fb2d75aa14b/load_bmat".
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.020913s.
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/9b97ef91266292d7468e71cfacf20fb2d75aa14b/sanitize".
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.018722s.
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/9b97ef91266292d7468e71cfacf20fb2d75aa14b/provenance".
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.020364s.
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/a2b603414e6a1cab759d57364fa175be272698a9/load_bmat".
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.021267s.
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/a2b603414e6a1cab759d57364fa175be272698a9/sanitize".
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.64214s.
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/a2b603414e6a1cab759d57364fa175be272698a9/provenance".
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.016519s.
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/d92a6477de874e046fd826e3d18f8489e8b0da0f/load_bmat".
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.02116s.
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/d92a6477de874e046fd826e3d18f8489e8b0da0f/sanitize".
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.019121s.
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/d92a6477de874e046fd826e3d18f8489e8b0da0f/provenance".
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.016734s.
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/87a43da320ed2a87abc61acd510d2bcd62c17739/load_bmat".
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.020609s.
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/87a43da320ed2a87abc61acd510d2bcd62c17739/sanitize".
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.845352s.
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/87a43da320ed2a87abc61acd510d2bcd62c17739/provenance".
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.021098s.
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/0eda6fdc2bc857558fe3d0acd9c93262baa21345/load_bmat".
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.021391s.
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/0eda6fdc2bc857558fe3d0acd9c93262baa21345/sanitize".
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.018863s.
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/0eda6fdc2bc857558fe3d0acd9c93262baa21345/provenance".
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.021382s.
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/05c9e737d70a29e7defc422b224cf0bf64ea9192/pre_clip".
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:58:35 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 7.127541s.
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/05c9e737d70a29e7defc422b224cf0bf64ea9192/RotationMask".
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.71919s.
2025-10-09 21:58:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/05c9e737d70a29e7defc422b224cf0bf64ea9192/PlotMosaicNoise".
2025-10-09 21:58:38 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:58:42 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.177699s.
2025-10-09 21:58:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/pre_clip".
2025-10-09 21:58:44 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:58:52 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 8.396894s.
2025-10-09 21:58:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/RotationMask".
2025-10-09 21:58:54 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:58:54 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.812662s.
2025-10-09 21:58:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/PlotMosaicNoise".
2025-10-09 21:58:56 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:59:00 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.39071s.
2025-10-09 21:59:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/5386b75365649bda85f881e04bc7b61882502cda/shells".
2025-10-09 21:59:02 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:02 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000652s.
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/5386b75365649bda85f881e04bc7b61882502cda/piesno".
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.767052s.
2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/40283487c2f5ac959710890b6005f326145780fa/shells".
2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000622s.
2025-10-09 21:59:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/40283487c2f5ac959710890b6005f326145780fa/piesno".
2025-10-09 21:59:08 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:08 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.77297s.
2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/shells".
2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000649s.
2025-10-09 21:59:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/piesno".
2025-10-09 21:59:12 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:13 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.008274s.
2025-10-09 21:59:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/9b97ef91266292d7468e71cfacf20fb2d75aa14b/shells".
2025-10-09 21:59:14 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:14 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000619s.
2025-10-09 21:59:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/9b97ef91266292d7468e71cfacf20fb2d75aa14b/piesno".
2025-10-09 21:59:16 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:17 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.036525s.
2025-10-09 21:59:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/a2b603414e6a1cab759d57364fa175be272698a9/shells".
2025-10-09 21:59:18 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:18 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000594s.
2025-10-09 21:59:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/a2b603414e6a1cab759d57364fa175be272698a9/piesno".
2025-10-09 21:59:20 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:20 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.757188s.
2025-10-09 21:59:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/d92a6477de874e046fd826e3d18f8489e8b0da0f/shells".
2025-10-09 21:59:22 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:22 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000605s.
2025-10-09 21:59:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/d92a6477de874e046fd826e3d18f8489e8b0da0f/piesno".
2025-10-09 21:59:24 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:24 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.796163s.
2025-10-09 21:59:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/87a43da320ed2a87abc61acd510d2bcd62c17739/shells".
2025-10-09 21:59:26 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:26 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000635s.
2025-10-09 21:59:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/87a43da320ed2a87abc61acd510d2bcd62c17739/piesno".
2025-10-09 21:59:28 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:29 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.050663s.
2025-10-09 21:59:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/0eda6fdc2bc857558fe3d0acd9c93262baa21345/shells".
2025-10-09 21:59:30 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:30 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.00065s.
2025-10-09 21:59:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/0eda6fdc2bc857558fe3d0acd9c93262baa21345/piesno".
2025-10-09 21:59:32 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:33 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.981762s.
2025-10-09 21:59:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/05c9e737d70a29e7defc422b224cf0bf64ea9192/pre_n4".
2025-10-09 21:59:34 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:01:18 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 104.326415s.
2025-10-09 22:01:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/05c9e737d70a29e7defc422b224cf0bf64ea9192/ds_report_background".
2025-10-09 22:01:20 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:01:20 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.006975s.
2025-10-09 22:01:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/pre_n4".
2025-10-09 22:01:20 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:03:04 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 104.484205s.
2025-10-09 22:03:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/ds_report_background".
2025-10-09 22:03:06 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:03:06 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.003973s.
2025-10-09 22:03:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/5386b75365649bda85f881e04bc7b61882502cda/dwi_ref".
2025-10-09 22:03:06 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:06 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.402303s.
2025-10-09 22:03:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/5386b75365649bda85f881e04bc7b61882502cda/get_lowb".
2025-10-09 22:03:08 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:08 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.256064s.
2025-10-09 22:03:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/40283487c2f5ac959710890b6005f326145780fa/dwi_ref".
2025-10-09 22:03:10 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:10 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.40403s.
2025-10-09 22:03:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/40283487c2f5ac959710890b6005f326145780fa/get_lowb".
2025-10-09 22:03:12 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:12 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.257688s.
2025-10-09 22:03:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/dwi_ref".
2025-10-09 22:03:14 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:14 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.512129s.
2025-10-09 22:03:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/get_lowb".
2025-10-09 22:03:16 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:16 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.331127s.
2025-10-09 22:03:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/9b97ef91266292d7468e71cfacf20fb2d75aa14b/dwi_ref".
2025-10-09 22:03:18 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:18 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.531638s.
2025-10-09 22:03:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/9b97ef91266292d7468e71cfacf20fb2d75aa14b/get_lowb".
2025-10-09 22:03:20 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:20 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.355379s.
2025-10-09 22:03:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/a2b603414e6a1cab759d57364fa175be272698a9/dwi_ref".
2025-10-09 22:03:22 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:22 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.435606s.
2025-10-09 22:03:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/a2b603414e6a1cab759d57364fa175be272698a9/get_lowb".
2025-10-09 22:03:24 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:24 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.261324s.
2025-10-09 22:03:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/d92a6477de874e046fd826e3d18f8489e8b0da0f/dwi_ref".
2025-10-09 22:03:26 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:26 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.431642s.
2025-10-09 22:03:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/d92a6477de874e046fd826e3d18f8489e8b0da0f/get_lowb".
2025-10-09 22:03:28 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:28 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.257764s.
2025-10-09 22:03:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/87a43da320ed2a87abc61acd510d2bcd62c17739/dwi_ref".
2025-10-09 22:03:30 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:30 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.531267s.
2025-10-09 22:03:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/87a43da320ed2a87abc61acd510d2bcd62c17739/get_lowb".
2025-10-09 22:03:32 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:32 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.330507s.
2025-10-09 22:03:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/0eda6fdc2bc857558fe3d0acd9c93262baa21345/dwi_ref".
2025-10-09 22:03:34 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:34 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.511553s.
2025-10-09 22:03:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/0eda6fdc2bc857558fe3d0acd9c93262baa21345/get_lowb".
2025-10-09 22:03:36 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:36 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.332656s.
2025-10-09 22:03:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/05c9e737d70a29e7defc422b224cf0bf64ea9192/synthstrip".
2025-10-09 22:03:38 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:04:47 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 69.599313s.
2025-10-09 22:04:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/synthstrip".
2025-10-09 22:04:48 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:05:56 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 67.94731s.
2025-10-09 22:05:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5386b75365649bda85f881e04bc7b61882502cda/pre_clip".
2025-10-09 22:05:58 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:05:58 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.461813s.
2025-10-09 22:06:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5386b75365649bda85f881e04bc7b61882502cda/SharpenEPI".
2025-10-09 22:06:00 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:06 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.944592s.
2025-10-09 22:06:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/5386b75365649bda85f881e04bc7b61882502cda/hmc_b0".
2025-10-09 22:06:08 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:06:24 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 16.139366s.
2025-10-09 22:06:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/40283487c2f5ac959710890b6005f326145780fa/pre_clip".
2025-10-09 22:06:26 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:06:26 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.464008s.
2025-10-09 22:06:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/40283487c2f5ac959710890b6005f326145780fa/SharpenEPI".
2025-10-09 22:06:28 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:34 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.940119s.
2025-10-09 22:06:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/40283487c2f5ac959710890b6005f326145780fa/hmc_b0".
2025-10-09 22:06:36 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:06:52 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 16.41813s.
2025-10-09 22:06:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/pre_clip".
2025-10-09 22:06:54 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:06:54 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.494705s.
2025-10-09 22:06:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/SharpenEPI".
2025-10-09 22:06:56 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:02 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.960981s.
2025-10-09 22:07:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/hmc_b0".
2025-10-09 22:07:04 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:25 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.767798s.
2025-10-09 22:07:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/pre_clip".
2025-10-09 22:07:26 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:26 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.486077s.
2025-10-09 22:07:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9b97ef91266292d7468e71cfacf20fb2d75aa14b/SharpenEPI".
2025-10-09 22:07:28 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:34 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.961263s.
2025-10-09 22:07:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/9b97ef91266292d7468e71cfacf20fb2d75aa14b/hmc_b0".
2025-10-09 22:07:36 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:57 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.806686s.
2025-10-09 22:07:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a2b603414e6a1cab759d57364fa175be272698a9/pre_clip".
2025-10-09 22:07:58 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:58 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.499878s.
2025-10-09 22:08:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a2b603414e6a1cab759d57364fa175be272698a9/SharpenEPI".
2025-10-09 22:08:00 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:06 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.9492840000000005s.
2025-10-09 22:08:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/a2b603414e6a1cab759d57364fa175be272698a9/hmc_b0".
2025-10-09 22:08:08 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:24 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 16.205213s.
2025-10-09 22:08:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/pre_clip".
2025-10-09 22:08:26 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:26 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.476571s.
2025-10-09 22:08:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d92a6477de874e046fd826e3d18f8489e8b0da0f/SharpenEPI".
2025-10-09 22:08:28 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:34 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.9425740000000005s.
2025-10-09 22:08:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/d92a6477de874e046fd826e3d18f8489e8b0da0f/hmc_b0".
2025-10-09 22:08:36 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:52 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 16.394267s.
2025-10-09 22:08:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/pre_clip".
2025-10-09 22:08:54 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:54 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.516809s.
2025-10-09 22:08:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/87a43da320ed2a87abc61acd510d2bcd62c17739/SharpenEPI".
2025-10-09 22:08:56 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:02 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.96781s.
2025-10-09 22:09:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/87a43da320ed2a87abc61acd510d2bcd62c17739/hmc_b0".
2025-10-09 22:09:04 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:09:25 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.842546s.
2025-10-09 22:09:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/pre_clip".
2025-10-09 22:09:26 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:09:26 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.498289s.
2025-10-09 22:09:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0eda6fdc2bc857558fe3d0acd9c93262baa21345/SharpenEPI".
2025-10-09 22:09:28 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:34 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.96694s.
2025-10-09 22:09:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/0eda6fdc2bc857558fe3d0acd9c93262baa21345/hmc_b0".
2025-10-09 22:09:36 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:09:57 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 21.03516s.
2025-10-09 22:09:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/05c9e737d70a29e7defc422b224cf0bf64ea9192/post_n4".
2025-10-09 22:09:58 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:16 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 18.550103s.
2025-10-09 22:10:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/05c9e737d70a29e7defc422b224cf0bf64ea9192/smoothness".
2025-10-09 22:10:18 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:10:21 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 3.195489s.
2025-10-09 22:10:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/05c9e737d70a29e7defc422b224cf0bf64ea9192/PlotMosaicZoomed".
2025-10-09 22:10:22 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:10:26 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.713796s.
2025-10-09 22:10:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/05c9e737d70a29e7defc422b224cf0bf64ea9192/PlotBrainmask".
2025-10-09 22:10:26 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:10:29 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.044617s.
2025-10-09 22:10:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/post_n4".
2025-10-09 22:10:30 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:48 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 18.464448s.
2025-10-09 22:10:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/smoothness".
2025-10-09 22:10:50 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:10:53 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 3.261073s.
2025-10-09 22:10:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/PlotMosaicZoomed".
2025-10-09 22:10:54 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:10:58 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.803795s.
2025-10-09 22:10:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/PlotBrainmask".
2025-10-09 22:10:58 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:11:01 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.076818s.
2025-10-09 22:11:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5386b75365649bda85f881e04bc7b61882502cda/pre_n4".
2025-10-09 22:11:02 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:08 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.966557s.
2025-10-09 22:11:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/40283487c2f5ac959710890b6005f326145780fa/pre_n4".
2025-10-09 22:11:10 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:16 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.959788s.
2025-10-09 22:11:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/pre_n4".
2025-10-09 22:11:18 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:24 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.932443s.
2025-10-09 22:11:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/pre_n4".
2025-10-09 22:11:26 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:32 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.9577860000000005s.
2025-10-09 22:11:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a2b603414e6a1cab759d57364fa175be272698a9/pre_n4".
2025-10-09 22:11:34 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:40 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.975246s.
2025-10-09 22:11:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/pre_n4".
2025-10-09 22:11:42 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:48 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.942713s.
2025-10-09 22:11:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/pre_n4".
2025-10-09 22:11:50 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:56 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.969408s.
2025-10-09 22:11:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/pre_n4".
2025-10-09 22:11:58 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:04 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.963392s.
2025-10-09 22:12:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/05c9e737d70a29e7defc422b224cf0bf64ea9192/final_masked".
2025-10-09 22:12:06 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:12:06 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.228131s.
2025-10-09 22:12:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/SpatialNormalization".
2025-10-09 22:12:08 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:12:08 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:13:13 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/SpatialNormalization/stderr.nipype-init).
2025-10-09 22:13:13 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:13:13 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:13:27 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:13:29 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:13:29 | INFO | niworkflows | Generating visual report
2025-10-09 22:13:43 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 95.179163s.
2025-10-09 22:13:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/05c9e737d70a29e7defc422b224cf0bf64ea9192/ds_report_zoomed".
2025-10-09 22:13:44 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:13:44 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.00402s.
2025-10-09 22:13:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/05c9e737d70a29e7defc422b224cf0bf64ea9192/ds_report_bmask".
2025-10-09 22:13:44 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:13:44 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004632s.
2025-10-09 22:13:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/final_masked".
2025-10-09 22:13:44 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:13:44 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.244151s.
2025-10-09 22:13:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/SpatialNormalization".
2025-10-09 22:13:46 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:13:47 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:14:50 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/SpatialNormalization/stderr.nipype-init).
2025-10-09 22:14:50 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:14:50 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:15:03 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:15:05 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:15:05 | INFO | niworkflows | Generating visual report
2025-10-09 22:15:19 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 93.025277s.
2025-10-09 22:15:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/ds_report_zoomed".
2025-10-09 22:15:20 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:15:20 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004127s.
2025-10-09 22:15:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/ds_report_bmask".
2025-10-09 22:15:20 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:15:20 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.003891s.
2025-10-09 22:15:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5386b75365649bda85f881e04bc7b61882502cda/synthstrip".
2025-10-09 22:15:20 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:16:07 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 46.506028s.
2025-10-09 22:16:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/40283487c2f5ac959710890b6005f326145780fa/synthstrip".
2025-10-09 22:16:08 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:16:55 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 46.539207s.
2025-10-09 22:16:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/synthstrip".
2025-10-09 22:16:56 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:17:42 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 46.424382s.
2025-10-09 22:17:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/synthstrip".
2025-10-09 22:17:44 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:18:30 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 46.459481s.
2025-10-09 22:18:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a2b603414e6a1cab759d57364fa175be272698a9/synthstrip".
2025-10-09 22:18:32 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 46.583759s.
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/synthstrip".
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:19:58 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 37.911769s.
2025-10-09 22:20:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/synthstrip".
2025-10-09 22:20:00 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:20:47 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 46.508182s.
2025-10-09 22:20:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/synthstrip".
2025-10-09 22:20:48 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:21:26 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 37.871605s.
2025-10-09 22:21:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/05c9e737d70a29e7defc422b224cf0bf64ea9192/ds_report_norm".
2025-10-09 22:21:26 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:21:26 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004016s.
2025-10-09 22:21:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/7b6963c5c8bd913bbbfa1b979f00d55666afcf10/ds_report_norm".
2025-10-09 22:21:26 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:21:26 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004086s.
2025-10-09 22:21:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5386b75365649bda85f881e04bc7b61882502cda/post_n4".
2025-10-09 22:21:26 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:21:28 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.6989049999999999s.
2025-10-09 22:21:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/5386b75365649bda85f881e04bc7b61882502cda/sp_mask".
2025-10-09 22:21:30 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:21:31 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.453415s.
2025-10-09 22:21:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/5386b75365649bda85f881e04bc7b61882502cda/drift".
2025-10-09 22:21:32 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:21:32 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0048, 0.9985, 1.0026, 1.0086, 1.0082, 1.0053.
2025-10-09 22:21:33 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.204058s.
2025-10-09 22:21:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5386b75365649bda85f881e04bc7b61882502cda/EPI2MNI".
2025-10-09 22:21:34 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:21:34 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:22:01 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:22:01 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5386b75365649bda85f881e04bc7b61882502cda/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5386b75365649bda85f881e04bc7b61882502cda/SharpenEPI/sub-cIVs040_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-116_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5386b75365649bda85f881e04bc7b61882502cda/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5386b75365649bda85f881e04bc7b61882502cda/SharpenEPI/sub-cIVs040_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-116_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5386b75365649bda85f881e04bc7b61882502cda/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5386b75365649bda85f881e04bc7b61882502cda/SharpenEPI/sub-cIVs040_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-116_dwi_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5386b75365649bda85f881e04bc7b61882502cda/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:22:56 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:22:56 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5386b75365649bda85f881e04bc7b61882502cda/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:22:56 | INFO | niworkflows | Generating visual report
2025-10-09 22:23:11 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 96.451486s.
2025-10-09 22:23:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/40283487c2f5ac959710890b6005f326145780fa/post_n4".
2025-10-09 22:23:12 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:23:14 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.713714s.
2025-10-09 22:23:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/40283487c2f5ac959710890b6005f326145780fa/sp_mask".
2025-10-09 22:23:14 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:23:15 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.474363s.
2025-10-09 22:23:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/40283487c2f5ac959710890b6005f326145780fa/drift".
2025-10-09 22:23:16 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:23:16 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0042, 1.0033, 1.0063, 1.0053, 0.9989, 1.0053.
2025-10-09 22:23:17 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.199348s.
2025-10-09 22:23:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/40283487c2f5ac959710890b6005f326145780fa/EPI2MNI".
2025-10-09 22:23:18 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:23:18 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:23:44 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:23:44 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/40283487c2f5ac959710890b6005f326145780fa/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/40283487c2f5ac959710890b6005f326145780fa/SharpenEPI/sub-cIVs040_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-219_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/40283487c2f5ac959710890b6005f326145780fa/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/40283487c2f5ac959710890b6005f326145780fa/SharpenEPI/sub-cIVs040_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-219_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/40283487c2f5ac959710890b6005f326145780fa/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/40283487c2f5ac959710890b6005f326145780fa/SharpenEPI/sub-cIVs040_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-219_dwi_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/40283487c2f5ac959710890b6005f326145780fa/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:24:42 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:24:42 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/40283487c2f5ac959710890b6005f326145780fa/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:24:42 | INFO | niworkflows | Generating visual report
2025-10-09 22:24:57 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 98.393212s.
2025-10-09 22:24:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/post_n4".
2025-10-09 22:24:58 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:25:00 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.7126109999999999s.
2025-10-09 22:25:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/sp_mask".
2025-10-09 22:25:00 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:25:01 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.605338s.
2025-10-09 22:25:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/drift".
2025-10-09 22:25:02 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:25:02 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 1.0001, 1.0015, 1.0088, 1.0056, 1.009, 1.0052, 0.9892, 0.9998.
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.548303s.
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/EPI2MNI".
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:25:04 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:25:30 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:25:30 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/SharpenEPI/sub-cIVs040_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-114_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/SharpenEPI/sub-cIVs040_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-114_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/SharpenEPI/sub-cIVs040_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-114_dwi_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:26:25 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:26:25 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:26:25 | INFO | niworkflows | Generating visual report
2025-10-09 22:26:40 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 95.333091s.
2025-10-09 22:26:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/post_n4".
2025-10-09 22:26:40 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:26:42 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.700385s.
2025-10-09 22:26:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/9b97ef91266292d7468e71cfacf20fb2d75aa14b/sp_mask".
2025-10-09 22:26:42 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:26:43 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.621145s.
2025-10-09 22:26:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/9b97ef91266292d7468e71cfacf20fb2d75aa14b/drift".
2025-10-09 22:26:44 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:26:44 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 1.0017, 0.9973, 1.0017, 1.0031, 1.0117, 1.0123, 1.0137, 0.9983.
2025-10-09 22:26:46 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.569755s.
2025-10-09 22:26:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9b97ef91266292d7468e71cfacf20fb2d75aa14b/EPI2MNI".
2025-10-09 22:26:46 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:26:46 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:27:13 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9b97ef91266292d7468e71cfacf20fb2d75aa14b/EPI2MNI/stderr.nipype-init).
2025-10-09 22:27:13 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:27:13 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9b97ef91266292d7468e71cfacf20fb2d75aa14b/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9b97ef91266292d7468e71cfacf20fb2d75aa14b/SharpenEPI/sub-cIVs040_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-217_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9b97ef91266292d7468e71cfacf20fb2d75aa14b/SharpenEPI/sub-cIVs040_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-217_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9b97ef91266292d7468e71cfacf20fb2d75aa14b/SharpenEPI/sub-cIVs040_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-217_dwi_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:28:13 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:28:13 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9b97ef91266292d7468e71cfacf20fb2d75aa14b/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:28:13 | INFO | niworkflows | Generating visual report
2025-10-09 22:28:28 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 101.255755s.
2025-10-09 22:28:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a2b603414e6a1cab759d57364fa175be272698a9/post_n4".
2025-10-09 22:28:28 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:28:30 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.779547s.
2025-10-09 22:28:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/a2b603414e6a1cab759d57364fa175be272698a9/sp_mask".
2025-10-09 22:28:30 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:28:31 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.481218s.
2025-10-09 22:28:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/a2b603414e6a1cab759d57364fa175be272698a9/drift".
2025-10-09 22:28:32 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:28:32 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.991, 0.993, 0.9966, 0.9977, 0.991, 0.9908.
2025-10-09 22:28:34 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.230178s.
2025-10-09 22:28:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a2b603414e6a1cab759d57364fa175be272698a9/EPI2MNI".
2025-10-09 22:28:34 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:28:34 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:28:57 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a2b603414e6a1cab759d57364fa175be272698a9/EPI2MNI/stderr.nipype-init).
2025-10-09 22:28:57 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:28:57 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a2b603414e6a1cab759d57364fa175be272698a9/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a2b603414e6a1cab759d57364fa175be272698a9/SharpenEPI/sub-cIVs040_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a2b603414e6a1cab759d57364fa175be272698a9/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a2b603414e6a1cab759d57364fa175be272698a9/SharpenEPI/sub-cIVs040_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a2b603414e6a1cab759d57364fa175be272698a9/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a2b603414e6a1cab759d57364fa175be272698a9/SharpenEPI/sub-cIVs040_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a2b603414e6a1cab759d57364fa175be272698a9/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:29:54 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:29:54 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a2b603414e6a1cab759d57364fa175be272698a9/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:29:54 | INFO | niworkflows | Generating visual report
2025-10-09 22:30:09 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 94.196523s.
2025-10-09 22:30:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/post_n4".
2025-10-09 22:30:10 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:30:12 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.724191s.
2025-10-09 22:30:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/d92a6477de874e046fd826e3d18f8489e8b0da0f/sp_mask".
2025-10-09 22:30:12 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:30:13 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.459984s.
2025-10-09 22:30:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/d92a6477de874e046fd826e3d18f8489e8b0da0f/drift".
2025-10-09 22:30:14 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:30:15 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9972, 0.9875, 0.9949, 0.9983, 0.997, 0.9966.
2025-10-09 22:30:16 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.234896s.
2025-10-09 22:30:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d92a6477de874e046fd826e3d18f8489e8b0da0f/EPI2MNI".
2025-10-09 22:30:16 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:30:16 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:30:41 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d92a6477de874e046fd826e3d18f8489e8b0da0f/EPI2MNI/stderr.nipype-init).
2025-10-09 22:30:41 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:30:41 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d92a6477de874e046fd826e3d18f8489e8b0da0f/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d92a6477de874e046fd826e3d18f8489e8b0da0f/SharpenEPI/sub-cIVs040_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-220_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d92a6477de874e046fd826e3d18f8489e8b0da0f/SharpenEPI/sub-cIVs040_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-220_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d92a6477de874e046fd826e3d18f8489e8b0da0f/SharpenEPI/sub-cIVs040_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-220_dwi_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:31:35 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:31:35 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d92a6477de874e046fd826e3d18f8489e8b0da0f/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:31:35 | INFO | niworkflows | Generating visual report
2025-10-09 22:31:50 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 93.451244s.
2025-10-09 22:31:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/post_n4".
2025-10-09 22:31:50 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:31:52 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.763171s.
2025-10-09 22:31:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/87a43da320ed2a87abc61acd510d2bcd62c17739/sp_mask".
2025-10-09 22:31:52 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:31:53 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.630055s.
2025-10-09 22:31:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/87a43da320ed2a87abc61acd510d2bcd62c17739/drift".
2025-10-09 22:31:54 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:31:55 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9989, 0.9961, 0.9941, 0.9926, 0.9911, 0.9878, 0.9886, 0.9921.
2025-10-09 22:31:56 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.576532s.
2025-10-09 22:31:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/87a43da320ed2a87abc61acd510d2bcd62c17739/EPI2MNI".
2025-10-09 22:31:56 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:31:56 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:32:21 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/87a43da320ed2a87abc61acd510d2bcd62c17739/EPI2MNI/stderr.nipype-init).
2025-10-09 22:32:21 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:32:21 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/87a43da320ed2a87abc61acd510d2bcd62c17739/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/87a43da320ed2a87abc61acd510d2bcd62c17739/SharpenEPI/sub-cIVs040_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/87a43da320ed2a87abc61acd510d2bcd62c17739/SharpenEPI/sub-cIVs040_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/87a43da320ed2a87abc61acd510d2bcd62c17739/SharpenEPI/sub-cIVs040_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:33:18 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:33:18 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/87a43da320ed2a87abc61acd510d2bcd62c17739/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:33:18 | INFO | niworkflows | Generating visual report
2025-10-09 22:33:33 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 96.354229s.
2025-10-09 22:33:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/post_n4".
2025-10-09 22:33:34 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:33:36 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.751198s.
2025-10-09 22:33:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/0eda6fdc2bc857558fe3d0acd9c93262baa21345/sp_mask".
2025-10-09 22:33:36 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:33:37 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.630148s.
2025-10-09 22:33:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/0eda6fdc2bc857558fe3d0acd9c93262baa21345/drift".
2025-10-09 22:33:38 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:33:39 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9993, 0.9929, 1.0, 0.9947, 0.9819, 0.9913, 0.9919, 0.9936.
2025-10-09 22:33:40 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.5728849999999999s.
2025-10-09 22:33:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0eda6fdc2bc857558fe3d0acd9c93262baa21345/EPI2MNI".
2025-10-09 22:33:40 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:33:40 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:34:03 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:34:03 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0eda6fdc2bc857558fe3d0acd9c93262baa21345/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0eda6fdc2bc857558fe3d0acd9c93262baa21345/SharpenEPI/sub-cIVs040_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-218_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0eda6fdc2bc857558fe3d0acd9c93262baa21345/SharpenEPI/sub-cIVs040_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-218_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0eda6fdc2bc857558fe3d0acd9c93262baa21345/SharpenEPI/sub-cIVs040_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-218_dwi_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:35:00 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:35:00 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0eda6fdc2bc857558fe3d0acd9c93262baa21345/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:35:00 | INFO | niworkflows | Generating visual report
2025-10-09 22:35:14 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 93.683986s.
2025-10-09 22:35:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5386b75365649bda85f881e04bc7b61882502cda/final_masked".
2025-10-09 22:35:15 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:35:15 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.027358s.
2025-10-09 22:35:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/5386b75365649bda85f881e04bc7b61882502cda/dwidenoise".
2025-10-09 22:35:17 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:35:30 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 13.121095s.
2025-10-09 22:35:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5386b75365649bda85f881e04bc7b61882502cda/ResampleSegmentation".
2025-10-09 22:35:31 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:35:33 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.5569319999999998s.
2025-10-09 22:35:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/40283487c2f5ac959710890b6005f326145780fa/final_masked".
2025-10-09 22:35:35 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:35:35 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.027306s.
2025-10-09 22:35:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/40283487c2f5ac959710890b6005f326145780fa/dwidenoise".
2025-10-09 22:35:37 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:35:50 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 13.205879s.
2025-10-09 22:35:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/40283487c2f5ac959710890b6005f326145780fa/ResampleSegmentation".
2025-10-09 22:35:51 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:35:53 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.3778449999999998s.
2025-10-09 22:35:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/final_masked".
2025-10-09 22:35:55 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:35:55 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.027457s.
2025-10-09 22:35:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/dwidenoise".
2025-10-09 22:35:57 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:36:21 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 24.178168s.
2025-10-09 22:36:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/ResampleSegmentation".
2025-10-09 22:36:23 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:36:25 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.533801s.
2025-10-09 22:36:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/final_masked".
2025-10-09 22:36:27 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:36:27 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.027121s.
2025-10-09 22:36:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/9b97ef91266292d7468e71cfacf20fb2d75aa14b/dwidenoise".
2025-10-09 22:36:29 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:36:52 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 23.386758s.
2025-10-09 22:36:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9b97ef91266292d7468e71cfacf20fb2d75aa14b/ResampleSegmentation".
2025-10-09 22:36:53 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:36:55 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.385778s.
2025-10-09 22:36:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a2b603414e6a1cab759d57364fa175be272698a9/final_masked".
2025-10-09 22:36:57 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:36:57 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.02844s.
2025-10-09 22:36:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/a2b603414e6a1cab759d57364fa175be272698a9/dwidenoise".
2025-10-09 22:36:59 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:37:13 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 14.078736s.
2025-10-09 22:37:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a2b603414e6a1cab759d57364fa175be272698a9/ResampleSegmentation".
2025-10-09 22:37:15 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:37:17 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.559923s.
2025-10-09 22:37:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/final_masked".
2025-10-09 22:37:19 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:37:19 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.027801s.
2025-10-09 22:37:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/d92a6477de874e046fd826e3d18f8489e8b0da0f/dwidenoise".
2025-10-09 22:37:21 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:37:34 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 13.797505s.
2025-10-09 22:37:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d92a6477de874e046fd826e3d18f8489e8b0da0f/ResampleSegmentation".
2025-10-09 22:37:35 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:37:37 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.506667s.
2025-10-09 22:37:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/final_masked".
2025-10-09 22:37:39 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:37:39 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.028064s.
2025-10-09 22:37:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/87a43da320ed2a87abc61acd510d2bcd62c17739/dwidenoise".
2025-10-09 22:37:41 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:38:06 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 25.09211s.
2025-10-09 22:38:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/87a43da320ed2a87abc61acd510d2bcd62c17739/ResampleSegmentation".
2025-10-09 22:38:07 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:38:09 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.683605s.
2025-10-09 22:38:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/final_masked".
2025-10-09 22:38:11 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:38:11 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.027602s.
2025-10-09 22:38:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/0eda6fdc2bc857558fe3d0acd9c93262baa21345/dwidenoise".
2025-10-09 22:38:13 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:38:37 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 24.725524s.
2025-10-09 22:38:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0eda6fdc2bc857558fe3d0acd9c93262baa21345/ResampleSegmentation".
2025-10-09 22:38:39 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:38:41 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.530297s.
2025-10-09 22:38:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/5386b75365649bda85f881e04bc7b61882502cda/dwimodel".
2025-10-09 22:38:43 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:45 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 2.5484809999999998s.
2025-10-09 22:38:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/5386b75365649bda85f881e04bc7b61882502cda/estimate_sigma".
2025-10-09 22:38:47 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:47 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.030805s.
2025-10-09 22:38:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5386b75365649bda85f881e04bc7b61882502cda/get_wm".
2025-10-09 22:38:49 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:49 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.031347s.
2025-10-09 22:38:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/40283487c2f5ac959710890b6005f326145780fa/dwimodel".
2025-10-09 22:38:51 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:53 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 2.5311909999999997s.
2025-10-09 22:38:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/40283487c2f5ac959710890b6005f326145780fa/estimate_sigma".
2025-10-09 22:38:55 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:55 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.031343s.
2025-10-09 22:38:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/40283487c2f5ac959710890b6005f326145780fa/get_wm".
2025-10-09 22:38:57 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:57 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.031049s.
2025-10-09 22:38:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/dwimodel".
2025-10-09 22:38:59 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:39:01 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 2.870615s.
2025-10-09 22:39:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/estimate_sigma".
2025-10-09 22:39:03 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:03 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.030826s.
2025-10-09 22:39:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/get_wm".
2025-10-09 22:39:05 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:05 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.030669s.
2025-10-09 22:39:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/9b97ef91266292d7468e71cfacf20fb2d75aa14b/dwimodel".
2025-10-09 22:39:07 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:39:09 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 2.761203s.
2025-10-09 22:39:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/9b97ef91266292d7468e71cfacf20fb2d75aa14b/estimate_sigma".
2025-10-09 22:39:11 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:11 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.031072s.
2025-10-09 22:39:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/get_wm".
2025-10-09 22:39:13 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:13 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.031092s.
2025-10-09 22:39:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/a2b603414e6a1cab759d57364fa175be272698a9/dwimodel".
2025-10-09 22:39:15 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:39:17 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 2.669706s.
2025-10-09 22:39:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/a2b603414e6a1cab759d57364fa175be272698a9/estimate_sigma".
2025-10-09 22:39:19 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:19 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.031319s.
2025-10-09 22:39:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a2b603414e6a1cab759d57364fa175be272698a9/get_wm".
2025-10-09 22:39:21 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:21 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.030439s.
2025-10-09 22:39:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/d92a6477de874e046fd826e3d18f8489e8b0da0f/dwimodel".
2025-10-09 22:39:23 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:39:25 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 2.637982s.
2025-10-09 22:39:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/d92a6477de874e046fd826e3d18f8489e8b0da0f/estimate_sigma".
2025-10-09 22:39:27 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:27 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.031244s.
2025-10-09 22:39:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/get_wm".
2025-10-09 22:39:29 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:29 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.030667s.
2025-10-09 22:39:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/87a43da320ed2a87abc61acd510d2bcd62c17739/dwimodel".
2025-10-09 22:39:31 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:39:34 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 2.952174s.
2025-10-09 22:39:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/87a43da320ed2a87abc61acd510d2bcd62c17739/estimate_sigma".
2025-10-09 22:39:35 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:35 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.030939s.
2025-10-09 22:39:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/get_wm".
2025-10-09 22:39:37 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:37 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.030386s.
2025-10-09 22:39:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/0eda6fdc2bc857558fe3d0acd9c93262baa21345/dwimodel".
2025-10-09 22:39:39 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:39:42 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 2.928629s.
2025-10-09 22:39:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/0eda6fdc2bc857558fe3d0acd9c93262baa21345/estimate_sigma".
2025-10-09 22:39:43 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:43 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.031199s.
2025-10-09 22:39:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/get_wm".
2025-10-09 22:39:45 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:45 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.030739s.
2025-10-09 22:39:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/5386b75365649bda85f881e04bc7b61882502cda/cc_mask".
2025-10-09 22:39:47 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:47 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.451908s.
2025-10-09 22:39:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5386b75365649bda85f881e04bc7b61882502cda/mosaic_fa".
2025-10-09 22:39:49 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:50 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.129071s.
2025-10-09 22:39:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5386b75365649bda85f881e04bc7b61882502cda/mosaic_md".
2025-10-09 22:39:51 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:52 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.381337s.
2025-10-09 22:39:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5386b75365649bda85f881e04bc7b61882502cda/plot_heatmap".
2025-10-09 22:39:53 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:39:54 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 0.974188s.
2025-10-09 22:39:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/40283487c2f5ac959710890b6005f326145780fa/cc_mask".
2025-10-09 22:39:55 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:55 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.416316s.
2025-10-09 22:39:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/40283487c2f5ac959710890b6005f326145780fa/mosaic_fa".
2025-10-09 22:39:57 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:58 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.245656s.
2025-10-09 22:39:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/40283487c2f5ac959710890b6005f326145780fa/mosaic_md".
2025-10-09 22:39:59 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:00 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.212312s.
2025-10-09 22:40:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/40283487c2f5ac959710890b6005f326145780fa/plot_heatmap".
2025-10-09 22:40:01 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:40:02 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.162062s.
2025-10-09 22:40:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/cc_mask".
2025-10-09 22:40:03 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:40:03 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.416393s.
2025-10-09 22:40:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/mosaic_fa".
2025-10-09 22:40:05 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:06 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.142378s.
2025-10-09 22:40:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/mosaic_md".
2025-10-09 22:40:07 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.408626s.
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/plot_heatmap".
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 0.985053s.
2025-10-09 22:40:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/9b97ef91266292d7468e71cfacf20fb2d75aa14b/cc_mask".
2025-10-09 22:40:11 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:40:11 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.443481s.
2025-10-09 22:40:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/mosaic_fa".
2025-10-09 22:40:13 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:14 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.247465s.
2025-10-09 22:40:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/mosaic_md".
2025-10-09 22:40:15 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.2113260000000001s.
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/plot_heatmap".
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.211272s.
2025-10-09 22:40:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/a2b603414e6a1cab759d57364fa175be272698a9/cc_mask".
2025-10-09 22:40:19 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:40:19 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.416175s.
2025-10-09 22:40:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a2b603414e6a1cab759d57364fa175be272698a9/mosaic_fa".
2025-10-09 22:40:21 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:22 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.142467s.
2025-10-09 22:40:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a2b603414e6a1cab759d57364fa175be272698a9/mosaic_md".
2025-10-09 22:40:23 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:24 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.216367s.
2025-10-09 22:40:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a2b603414e6a1cab759d57364fa175be272698a9/plot_heatmap".
2025-10-09 22:40:25 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:40:26 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.166556s.
2025-10-09 22:40:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/d92a6477de874e046fd826e3d18f8489e8b0da0f/cc_mask".
2025-10-09 22:40:27 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:40:27 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.421797s.
2025-10-09 22:40:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/mosaic_fa".
2025-10-09 22:40:29 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:30 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.141252s.
2025-10-09 22:40:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/mosaic_md".
2025-10-09 22:40:31 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:32 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.39489s.
2025-10-09 22:40:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/plot_heatmap".
2025-10-09 22:40:33 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:40:34 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 0.941914s.
2025-10-09 22:40:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/87a43da320ed2a87abc61acd510d2bcd62c17739/cc_mask".
2025-10-09 22:40:35 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:40:35 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.441714s.
2025-10-09 22:40:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/mosaic_fa".
2025-10-09 22:40:37 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:38 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.265501s.
2025-10-09 22:40:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/mosaic_md".
2025-10-09 22:40:39 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:40 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.415768s.
2025-10-09 22:40:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/plot_heatmap".
2025-10-09 22:40:41 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 0.996756s.
2025-10-09 22:40:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/0eda6fdc2bc857558fe3d0acd9c93262baa21345/cc_mask".
2025-10-09 22:40:43 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:40:43 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.418061s.
2025-10-09 22:40:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/mosaic_fa".
2025-10-09 22:40:45 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:46 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.255616s.
2025-10-09 22:40:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/mosaic_md".
2025-10-09 22:40:47 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:48 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.218361s.
2025-10-09 22:40:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/plot_heatmap".
2025-10-09 22:40:49 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:40:50 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.217363s.
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5386b75365649bda85f881e04bc7b61882502cda/ds_report_fa".
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004278s.
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5386b75365649bda85f881e04bc7b61882502cda/ds_report_md".
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004183s.
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5386b75365649bda85f881e04bc7b61882502cda/ds_report_hm".
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004213s.
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/40283487c2f5ac959710890b6005f326145780fa/ds_report_fa".
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004094s.
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/40283487c2f5ac959710890b6005f326145780fa/ds_report_md".
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004194s.
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/40283487c2f5ac959710890b6005f326145780fa/ds_report_hm".
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004229s.
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/ds_report_fa".
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004177s.
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/ds_report_md".
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:51 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.0042s.
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a33d75d5a7b2b7d5a9054d721dc2ab4b084f02b7/ds_report_hm".
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004032s.
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/ds_report_fa".
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004197s.
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/ds_report_md".
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004046s.
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9b97ef91266292d7468e71cfacf20fb2d75aa14b/ds_report_hm".
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004052s.
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a2b603414e6a1cab759d57364fa175be272698a9/ds_report_fa".
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004195s.
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a2b603414e6a1cab759d57364fa175be272698a9/ds_report_md".
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004063s.
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a2b603414e6a1cab759d57364fa175be272698a9/ds_report_hm".
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004032s.
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/ds_report_fa".
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004158s.
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/ds_report_md".
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004218s.
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d92a6477de874e046fd826e3d18f8489e8b0da0f/ds_report_hm".
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004041s.
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/ds_report_fa".
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004043s.
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/ds_report_md".
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004212s.
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/87a43da320ed2a87abc61acd510d2bcd62c17739/ds_report_hm".
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004194s.
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/ds_report_fa".
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004053s.
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/ds_report_md".
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004212s.
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0eda6fdc2bc857558fe3d0acd9c93262baa21345/ds_report_hm".
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004056s.
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:40:59 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 6.078371s.
2025-10-09 22:41:02 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:41:02 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:41:08 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 6.120486s.
2025-10-09 22:41:10 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:41:10 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:41:16 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 6.09055s.
2025-10-09 22:41:18 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:41:18 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:41:18 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:41:18 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:41:18 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:41:18 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:41:18 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/05c9e737d70a29e7defc422b224cf0bf64ea9192/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:41:18 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:41:18 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:41:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/05c9e737d70a29e7defc422b224cf0bf64ea9192/Enhance".
2025-10-09 22:41:20 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:41:20 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.469629s.
2025-10-09 22:41:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/05c9e737d70a29e7defc422b224cf0bf64ea9192/format_tpm_names".
2025-10-09 22:41:22 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:41:23 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 1.336395s.
2025-10-09 22:41:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/05c9e737d70a29e7defc422b224cf0bf64ea9192/Grad".
2025-10-09 22:41:24 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:41:30 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 5.9564070000000005s.
2025-10-09 22:41:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/05c9e737d70a29e7defc422b224cf0bf64ea9192/apply_mask".
2025-10-09 22:41:32 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:41:32 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.229788s.
2025-10-09 22:41:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/05c9e737d70a29e7defc422b224cf0bf64ea9192/GradientThreshold".
2025-10-09 22:41:34 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:41:45 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 11.338029s.
2025-10-09 22:41:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/05c9e737d70a29e7defc422b224cf0bf64ea9192/segmentation".
2025-10-09 22:41:46 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:42:49 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 63.879921s.
2025-10-09 22:42:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/05c9e737d70a29e7defc422b224cf0bf64ea9192/ArtifactMask".
2025-10-09 22:42:50 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:42:55 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 5.48105s.
2025-10-09 22:42:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/05c9e737d70a29e7defc422b224cf0bf64ea9192/PlotHeadmask".
2025-10-09 22:42:56 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:42:58 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 2.662385s.
2025-10-09 22:43:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/05c9e737d70a29e7defc422b224cf0bf64ea9192/harmonize".
2025-10-09 22:43:00 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:43:00 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.84706s.
2025-10-09 22:43:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/05c9e737d70a29e7defc422b224cf0bf64ea9192/PlotSegmentation".
2025-10-09 22:43:02 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:43:05 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 2.992906s.
2025-10-09 22:43:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/05c9e737d70a29e7defc422b224cf0bf64ea9192/provenance".
2025-10-09 22:43:06 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:43:06 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.047357s.
2025-10-09 22:43:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/05c9e737d70a29e7defc422b224cf0bf64ea9192/ComputeQI2".
2025-10-09 22:43:06 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:43:06 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.240062s.
2025-10-09 22:43:06 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:43:06 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/05c9e737d70a29e7defc422b224cf0bf64ea9192/ComputeQI2)
2025-10-09 22:43:06 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=239) crashed: /var/lib/condor/execute/dir_1898337/ds/logs/crash-20251009-224306-fhoffstaedter-ComputeQI2.a0-de328d42-29c8-4ffb-9f47-e7ce28cd52e2.txt
get(ok): sourcedata/raw/sub-cIVs040/ses-s1Bx1/anat/sub-cIVs040_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs040/ses-s1Bx1/dwi/sub-cIVs040_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-115_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs040/ses-s1Bx1/dwi/sub-cIVs040_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-218_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs040/ses-s1Bx1/dwi/sub-cIVs040_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-116_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs040/ses-s1Bx1/dwi/sub-cIVs040_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-219_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs040/ses-s1Bx1/dwi/sub-cIVs040_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-114_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs040/ses-s1Bx1/dwi/sub-cIVs040_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-217_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs040/ses-s1Bx2/anat/sub-cIVs040_ses-s1Bx2_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs040/ses-s1Bx2/dwi/sub-cIVs040_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs040/ses-s1Bx2/dwi/sub-cIVs040_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-219_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs040/ses-s1Bx2/dwi/sub-cIVs040_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs040/ses-s1Bx2/dwi/sub-cIVs040_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-220_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs040/ses-s1Bx2/dwi/sub-cIVs040_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs040/ses-s1Bx2/dwi/sub-cIVs040_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-218_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs040 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_1898337/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 16)
run (error: 1)
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