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ds003416-mriqc/logs/sub-cIVs032_10066492.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

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install(ok): /var/lib/condor/execute/dir_3951239/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3951239/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3951239/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_3951239/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:54:05 | IMPORTANT | mriqc | Extracting metadata and entities for 2 input runs of modality 't1w'...
2025-10-09 21:54:05 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.00 GB [maximum|average].
2025-10-09 21:54:05 | IMPORTANT | mriqc | Extracting metadata and entities for 12 input runs of modality 'dwi'...
2025-10-09 21:54:05 | WARNING | nipype.workflow | 4 cannot be processed (too short or too long)
2025-10-09 21:54:05 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:54:05 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215403_ce69302f-45cd-456e-bc61-c81db8a0b72a.toml.
2025-10-09 21:54:10 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:54:11 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:54:11 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 8 NIfTI files..
2025-10-09 21:54:12 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 2 NIfTI files..
2025-10-09 21:54:16 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:54:20 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:54:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/da238a71468e5da856c91a5f1994fca4d7f4141a/conform".
2025-10-09 21:54:20 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:54:21 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.245054s.
2025-10-09 21:54:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/201569bd1b204b9060c6d20017c8e693a9845147/conform".
2025-10-09 21:54:22 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:54:23 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.646467s.
2025-10-09 21:54:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/sanitize".
2025-10-09 21:54:24 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:54:25 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.718737s.
2025-10-09 21:54:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/provenance".
2025-10-09 21:54:26 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:54:26 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.016551s.
2025-10-09 21:54:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/load_bmat".
2025-10-09 21:54:26 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:54:27 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.174809s.
2025-10-09 21:54:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/8fda5306677586eff5748a755790e5f52cefcb68/sanitize".
2025-10-09 21:54:28 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:54:29 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.78914s.
2025-10-09 21:54:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8fda5306677586eff5748a755790e5f52cefcb68/provenance".
2025-10-09 21:54:30 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:54:30 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.016418s.
2025-10-09 21:54:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/8fda5306677586eff5748a755790e5f52cefcb68/load_bmat".
2025-10-09 21:54:30 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:54:30 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023075s.
2025-10-09 21:54:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/sanitize".
2025-10-09 21:54:32 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:54:33 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.936994s.
2025-10-09 21:54:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/provenance".
2025-10-09 21:54:34 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:54:34 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.021219s.
2025-10-09 21:54:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/load_bmat".
2025-10-09 21:54:34 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:54:34 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024456s.
2025-10-09 21:54:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/2849da61b7af1091f6f0edc71ac073d594885588/sanitize".
2025-10-09 21:54:36 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:54:37 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.936561s.
2025-10-09 21:54:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/2849da61b7af1091f6f0edc71ac073d594885588/provenance".
2025-10-09 21:54:38 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:54:38 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.021113s.
2025-10-09 21:54:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/2849da61b7af1091f6f0edc71ac073d594885588/load_bmat".
2025-10-09 21:54:38 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:54:39 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023653s.
2025-10-09 21:54:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/bf189a5a498c67810dd235dcc488076c198d1fa8/sanitize".
2025-10-09 21:54:40 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:54:40 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.021653s.
2025-10-09 21:54:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/bf189a5a498c67810dd235dcc488076c198d1fa8/provenance".
2025-10-09 21:54:42 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:54:42 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.018189s.
2025-10-09 21:54:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/bf189a5a498c67810dd235dcc488076c198d1fa8/load_bmat".
2025-10-09 21:54:42 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:54:43 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024047s.
2025-10-09 21:54:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/26626567734536bcc8eaf26d14460f818f6205d0/sanitize".
2025-10-09 21:54:44 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:54:44 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.021657s.
2025-10-09 21:54:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/26626567734536bcc8eaf26d14460f818f6205d0/provenance".
2025-10-09 21:54:46 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:54:46 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.018133s.
2025-10-09 21:54:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/26626567734536bcc8eaf26d14460f818f6205d0/load_bmat".
2025-10-09 21:54:46 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:54:46 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.032383s.
2025-10-09 21:54:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/f6bae3741b2d0e82d80bfa72c2495515531c942f/sanitize".
2025-10-09 21:54:48 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:54:48 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.021886s.
2025-10-09 21:54:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/f6bae3741b2d0e82d80bfa72c2495515531c942f/provenance".
2025-10-09 21:54:50 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:54:50 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.023412s.
2025-10-09 21:54:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/f6bae3741b2d0e82d80bfa72c2495515531c942f/load_bmat".
2025-10-09 21:54:50 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:54:50 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023229s.
2025-10-09 21:54:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/d3683441fb14f94ffedf06132aca58cf4e1c9099/sanitize".
2025-10-09 21:54:52 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:54:52 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.021328s.
2025-10-09 21:54:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/d3683441fb14f94ffedf06132aca58cf4e1c9099/provenance".
2025-10-09 21:54:54 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:54:54 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.023511s.
2025-10-09 21:54:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/d3683441fb14f94ffedf06132aca58cf4e1c9099/load_bmat".
2025-10-09 21:54:54 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:54:54 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024612s.
2025-10-09 21:54:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/da238a71468e5da856c91a5f1994fca4d7f4141a/pre_clip".
2025-10-09 21:54:56 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:55:05 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 8.399247s.
2025-10-09 21:55:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/da238a71468e5da856c91a5f1994fca4d7f4141a/RotationMask".
2025-10-09 21:55:06 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:55:07 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.654553s.
2025-10-09 21:55:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/da238a71468e5da856c91a5f1994fca4d7f4141a/PlotMosaicNoise".
2025-10-09 21:55:08 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:55:13 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.6836780000000005s.
2025-10-09 21:55:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/201569bd1b204b9060c6d20017c8e693a9845147/pre_clip".
2025-10-09 21:55:14 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:55:24 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 9.433639s.
2025-10-09 21:55:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/201569bd1b204b9060c6d20017c8e693a9845147/RotationMask".
2025-10-09 21:55:24 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:55:25 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.706084s.
2025-10-09 21:55:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/201569bd1b204b9060c6d20017c8e693a9845147/PlotMosaicNoise".
2025-10-09 21:55:26 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:55:31 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.977536s.
2025-10-09 21:55:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/piesno".
2025-10-09 21:55:32 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:55:33 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.854261s.
2025-10-09 21:55:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/shells".
2025-10-09 21:55:34 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:55:34 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000748s.
2025-10-09 21:55:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/8fda5306677586eff5748a755790e5f52cefcb68/piesno".
2025-10-09 21:55:36 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:55:37 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.844069s.
2025-10-09 21:55:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/8fda5306677586eff5748a755790e5f52cefcb68/shells".
2025-10-09 21:55:38 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:55:38 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000655s.
2025-10-09 21:55:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/piesno".
2025-10-09 21:55:40 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:55:41 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.104636s.
2025-10-09 21:55:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/shells".
2025-10-09 21:55:42 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:55:42 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000791s.
2025-10-09 21:55:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/2849da61b7af1091f6f0edc71ac073d594885588/piesno".
2025-10-09 21:55:44 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:55:45 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.12163s.
2025-10-09 21:55:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/2849da61b7af1091f6f0edc71ac073d594885588/shells".
2025-10-09 21:55:46 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:55:46 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000724s.
2025-10-09 21:55:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/bf189a5a498c67810dd235dcc488076c198d1fa8/piesno".
2025-10-09 21:55:48 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:55:49 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.871475s.
2025-10-09 21:55:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/bf189a5a498c67810dd235dcc488076c198d1fa8/shells".
2025-10-09 21:55:50 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:55:50 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.00063s.
2025-10-09 21:55:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/26626567734536bcc8eaf26d14460f818f6205d0/piesno".
2025-10-09 21:55:52 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:55:53 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.870912s.
2025-10-09 21:55:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/26626567734536bcc8eaf26d14460f818f6205d0/shells".
2025-10-09 21:55:54 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:55:54 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000634s.
2025-10-09 21:55:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/f6bae3741b2d0e82d80bfa72c2495515531c942f/piesno".
2025-10-09 21:55:56 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:55:58 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.2443170000000001s.
2025-10-09 21:55:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/f6bae3741b2d0e82d80bfa72c2495515531c942f/shells".
2025-10-09 21:55:58 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:55:58 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.00169s.
2025-10-09 21:56:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/d3683441fb14f94ffedf06132aca58cf4e1c9099/piesno".
2025-10-09 21:56:00 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:56:02 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.213008s.
2025-10-09 21:56:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/d3683441fb14f94ffedf06132aca58cf4e1c9099/shells".
2025-10-09 21:56:02 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:56:02 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000724s.
2025-10-09 21:56:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/da238a71468e5da856c91a5f1994fca4d7f4141a/pre_n4".
2025-10-09 21:56:04 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 121.556584s.
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/da238a71468e5da856c91a5f1994fca4d7f4141a/ds_report_background".
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.008288s.
2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/201569bd1b204b9060c6d20017c8e693a9845147/pre_n4".
2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:00:11 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 122.914543s.
2025-10-09 22:00:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/201569bd1b204b9060c6d20017c8e693a9845147/ds_report_background".
2025-10-09 22:00:12 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:00:12 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.004691s.
2025-10-09 22:00:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/dwi_ref".
2025-10-09 22:00:13 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:13 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.457067s.
2025-10-09 22:00:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/get_lowb".
2025-10-09 22:00:14 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:15 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.28181s.
2025-10-09 22:00:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/8fda5306677586eff5748a755790e5f52cefcb68/dwi_ref".
2025-10-09 22:00:16 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:17 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.473756s.
2025-10-09 22:00:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/8fda5306677586eff5748a755790e5f52cefcb68/get_lowb".
2025-10-09 22:00:18 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:19 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.333017s.
2025-10-09 22:00:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/dwi_ref".
2025-10-09 22:00:20 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:21 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.586387s.
2025-10-09 22:00:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/get_lowb".
2025-10-09 22:00:22 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:23 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.382059s.
2025-10-09 22:00:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/2849da61b7af1091f6f0edc71ac073d594885588/dwi_ref".
2025-10-09 22:00:24 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:25 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.582201s.
2025-10-09 22:00:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/2849da61b7af1091f6f0edc71ac073d594885588/get_lowb".
2025-10-09 22:00:26 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:27 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.371204s.
2025-10-09 22:00:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/bf189a5a498c67810dd235dcc488076c198d1fa8/dwi_ref".
2025-10-09 22:00:28 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:29 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.497979s.
2025-10-09 22:00:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/bf189a5a498c67810dd235dcc488076c198d1fa8/get_lowb".
2025-10-09 22:00:30 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:31 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.297321s.
2025-10-09 22:00:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/26626567734536bcc8eaf26d14460f818f6205d0/dwi_ref".
2025-10-09 22:00:32 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:33 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.475601s.
2025-10-09 22:00:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/26626567734536bcc8eaf26d14460f818f6205d0/get_lowb".
2025-10-09 22:00:34 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:35 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.294198s.
2025-10-09 22:00:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/f6bae3741b2d0e82d80bfa72c2495515531c942f/dwi_ref".
2025-10-09 22:00:36 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:37 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.597654s.
2025-10-09 22:00:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/f6bae3741b2d0e82d80bfa72c2495515531c942f/get_lowb".
2025-10-09 22:00:38 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:39 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.380731s.
2025-10-09 22:00:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/d3683441fb14f94ffedf06132aca58cf4e1c9099/dwi_ref".
2025-10-09 22:00:40 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:41 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.588447s.
2025-10-09 22:00:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/d3683441fb14f94ffedf06132aca58cf4e1c9099/get_lowb".
2025-10-09 22:00:42 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:43 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.382217s.
2025-10-09 22:00:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/da238a71468e5da856c91a5f1994fca4d7f4141a/synthstrip".
2025-10-09 22:00:44 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:02:06 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 81.721827s.
2025-10-09 22:02:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/201569bd1b204b9060c6d20017c8e693a9845147/synthstrip".
2025-10-09 22:02:07 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:03:28 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 81.136534s.
2025-10-09 22:03:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/pre_clip".
2025-10-09 22:03:29 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:03:29 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.536844s.
2025-10-09 22:03:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/SharpenEPI".
2025-10-09 22:03:31 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:03:38 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.091083s.
2025-10-09 22:03:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/hmc_b0".
2025-10-09 22:03:39 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:03:59 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.020596s.
2025-10-09 22:04:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8fda5306677586eff5748a755790e5f52cefcb68/pre_clip".
2025-10-09 22:04:01 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:04:01 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.561923s.
2025-10-09 22:04:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8fda5306677586eff5748a755790e5f52cefcb68/SharpenEPI".
2025-10-09 22:04:03 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:04:10 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.081119s.
2025-10-09 22:04:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/8fda5306677586eff5748a755790e5f52cefcb68/hmc_b0".
2025-10-09 22:04:11 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:04:31 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.092338s.
2025-10-09 22:04:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/pre_clip".
2025-10-09 22:04:33 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:04:33 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.55842s.
2025-10-09 22:04:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/SharpenEPI".
2025-10-09 22:04:35 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:04:42 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.179644s.
2025-10-09 22:04:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/hmc_b0".
2025-10-09 22:04:43 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:05:09 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 26.049449s.
2025-10-09 22:05:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2849da61b7af1091f6f0edc71ac073d594885588/pre_clip".
2025-10-09 22:05:11 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:05:11 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.597006s.
2025-10-09 22:05:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2849da61b7af1091f6f0edc71ac073d594885588/SharpenEPI".
2025-10-09 22:05:13 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:20 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.272411s.
2025-10-09 22:05:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/2849da61b7af1091f6f0edc71ac073d594885588/hmc_b0".
2025-10-09 22:05:21 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:05:46 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 25.61859s.
2025-10-09 22:05:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/pre_clip".
2025-10-09 22:05:47 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:05:47 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.576846s.
2025-10-09 22:05:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/bf189a5a498c67810dd235dcc488076c198d1fa8/SharpenEPI".
2025-10-09 22:05:49 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:56 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.051097s.
2025-10-09 22:05:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/bf189a5a498c67810dd235dcc488076c198d1fa8/hmc_b0".
2025-10-09 22:05:57 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:06:17 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.21252s.
2025-10-09 22:06:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/26626567734536bcc8eaf26d14460f818f6205d0/pre_clip".
2025-10-09 22:06:19 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:06:19 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.580781s.
2025-10-09 22:06:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/26626567734536bcc8eaf26d14460f818f6205d0/SharpenEPI".
2025-10-09 22:06:21 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:28 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.292825s.
2025-10-09 22:06:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/26626567734536bcc8eaf26d14460f818f6205d0/hmc_b0".
2025-10-09 22:06:29 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:06:48 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 19.606643s.
2025-10-09 22:06:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/pre_clip".
2025-10-09 22:06:49 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:06:49 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.556731s.
2025-10-09 22:06:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6bae3741b2d0e82d80bfa72c2495515531c942f/SharpenEPI".
2025-10-09 22:06:51 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:58 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.150651s.
2025-10-09 22:06:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/f6bae3741b2d0e82d80bfa72c2495515531c942f/hmc_b0".
2025-10-09 22:06:59 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:23 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 24.627449s.
2025-10-09 22:07:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/pre_clip".
2025-10-09 22:07:25 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:25 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.58987s.
2025-10-09 22:07:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d3683441fb14f94ffedf06132aca58cf4e1c9099/SharpenEPI".
2025-10-09 22:07:27 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:34 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.206185s.
2025-10-09 22:07:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/d3683441fb14f94ffedf06132aca58cf4e1c9099/hmc_b0".
2025-10-09 22:07:35 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:59 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 24.805274s.
2025-10-09 22:08:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/da238a71468e5da856c91a5f1994fca4d7f4141a/post_n4".
2025-10-09 22:08:01 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:25 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 23.967s.
2025-10-09 22:08:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/da238a71468e5da856c91a5f1994fca4d7f4141a/smoothness".
2025-10-09 22:08:27 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:08:31 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 4.41872s.
2025-10-09 22:08:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/da238a71468e5da856c91a5f1994fca4d7f4141a/PlotMosaicZoomed".
2025-10-09 22:08:33 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:08:37 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 4.436188s.
2025-10-09 22:08:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/da238a71468e5da856c91a5f1994fca4d7f4141a/PlotBrainmask".
2025-10-09 22:08:39 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:08:42 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.524718s.
2025-10-09 22:08:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/201569bd1b204b9060c6d20017c8e693a9845147/post_n4".
2025-10-09 22:08:43 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:07 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 24.265465s.
2025-10-09 22:09:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/201569bd1b204b9060c6d20017c8e693a9845147/smoothness".
2025-10-09 22:09:09 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:09:13 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 4.675365s.
2025-10-09 22:09:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/201569bd1b204b9060c6d20017c8e693a9845147/PlotMosaicZoomed".
2025-10-09 22:09:15 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:09:19 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 4.528852s.
2025-10-09 22:09:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/201569bd1b204b9060c6d20017c8e693a9845147/PlotBrainmask".
2025-10-09 22:09:21 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:09:24 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.46338s.
2025-10-09 22:09:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/pre_n4".
2025-10-09 22:09:25 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:32 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.061832s.
2025-10-09 22:09:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8fda5306677586eff5748a755790e5f52cefcb68/pre_n4".
2025-10-09 22:09:33 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:40 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.096201s.
2025-10-09 22:09:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/pre_n4".
2025-10-09 22:09:41 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:48 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.203336s.
2025-10-09 22:09:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2849da61b7af1091f6f0edc71ac073d594885588/pre_n4".
2025-10-09 22:09:49 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:56 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.084095s.
2025-10-09 22:09:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/pre_n4".
2025-10-09 22:09:57 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:04 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.065405s.
2025-10-09 22:10:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/26626567734536bcc8eaf26d14460f818f6205d0/pre_n4".
2025-10-09 22:10:05 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:12 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.030635s.
2025-10-09 22:10:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/pre_n4".
2025-10-09 22:10:13 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:20 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.101879s.
2025-10-09 22:10:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/pre_n4".
2025-10-09 22:10:21 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:28 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.073031s.
2025-10-09 22:10:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/da238a71468e5da856c91a5f1994fca4d7f4141a/final_masked".
2025-10-09 22:10:29 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:10:29 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.264903s.
2025-10-09 22:10:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/da238a71468e5da856c91a5f1994fca4d7f4141a/SpatialNormalization".
2025-10-09 22:10:31 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:10:32 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:11:42 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:11:42 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/da238a71468e5da856c91a5f1994fca4d7f4141a/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/da238a71468e5da856c91a5f1994fca4d7f4141a/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/da238a71468e5da856c91a5f1994fca4d7f4141a/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/da238a71468e5da856c91a5f1994fca4d7f4141a/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/da238a71468e5da856c91a5f1994fca4d7f4141a/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:11:58 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:11:59 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/da238a71468e5da856c91a5f1994fca4d7f4141a/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/da238a71468e5da856c91a5f1994fca4d7f4141a/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:11:59 | INFO | niworkflows | Generating visual report
2025-10-09 22:12:15 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 104.706391s.
2025-10-09 22:12:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/da238a71468e5da856c91a5f1994fca4d7f4141a/ds_report_zoomed".
2025-10-09 22:12:17 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:12:17 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004646s.
2025-10-09 22:12:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/da238a71468e5da856c91a5f1994fca4d7f4141a/ds_report_bmask".
2025-10-09 22:12:17 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:12:17 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004449s.
2025-10-09 22:12:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/201569bd1b204b9060c6d20017c8e693a9845147/final_masked".
2025-10-09 22:12:17 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:12:17 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.309494s.
2025-10-09 22:12:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/201569bd1b204b9060c6d20017c8e693a9845147/SpatialNormalization".
2025-10-09 22:12:19 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:12:20 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:13:33 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:13:33 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/201569bd1b204b9060c6d20017c8e693a9845147/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/201569bd1b204b9060c6d20017c8e693a9845147/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/201569bd1b204b9060c6d20017c8e693a9845147/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/201569bd1b204b9060c6d20017c8e693a9845147/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/201569bd1b204b9060c6d20017c8e693a9845147/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:13:49 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:13:51 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/201569bd1b204b9060c6d20017c8e693a9845147/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/201569bd1b204b9060c6d20017c8e693a9845147/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:13:51 | INFO | niworkflows | Generating visual report
2025-10-09 22:14:08 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 109.177758s.
2025-10-09 22:14:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/201569bd1b204b9060c6d20017c8e693a9845147/ds_report_zoomed".
2025-10-09 22:14:09 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:14:09 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004475s.
2025-10-09 22:14:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/201569bd1b204b9060c6d20017c8e693a9845147/ds_report_bmask".
2025-10-09 22:14:09 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:14:09 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.01421s.
2025-10-09 22:14:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/synthstrip".
2025-10-09 22:14:09 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:15:04 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 55.169881s.
2025-10-09 22:15:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8fda5306677586eff5748a755790e5f52cefcb68/synthstrip".
2025-10-09 22:15:05 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:16:00 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 55.223733s.
2025-10-09 22:16:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/synthstrip".
2025-10-09 22:16:01 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:16:58 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 56.679707s.
2025-10-09 22:16:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2849da61b7af1091f6f0edc71ac073d594885588/synthstrip".
2025-10-09 22:16:59 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:17:56 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 56.886539s.
2025-10-09 22:17:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/synthstrip".
2025-10-09 22:17:57 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:18:45 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 47.779411s.
2025-10-09 22:18:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/26626567734536bcc8eaf26d14460f818f6205d0/synthstrip".
2025-10-09 22:18:45 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:19:33 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 48.108896s.
2025-10-09 22:19:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/synthstrip".
2025-10-09 22:19:35 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:20:23 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 47.7679s.
2025-10-09 22:20:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/synthstrip".
2025-10-09 22:20:23 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:21:11 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 47.834299s.
2025-10-09 22:21:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/da238a71468e5da856c91a5f1994fca4d7f4141a/ds_report_norm".
2025-10-09 22:21:11 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:21:11 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.00486s.
2025-10-09 22:21:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/201569bd1b204b9060c6d20017c8e693a9845147/ds_report_norm".
2025-10-09 22:21:11 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:21:11 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004922s.
2025-10-09 22:21:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/post_n4".
2025-10-09 22:21:11 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:21:14 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.284428s.
2025-10-09 22:21:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/sp_mask".
2025-10-09 22:21:15 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:21:16 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.961466s.
2025-10-09 22:21:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/drift".
2025-10-09 22:21:17 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:21:17 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.008, 1.0175, 0.9397, 1.0147, 1.0025, 1.0162.
2025-10-09 22:21:18 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.462874s.
2025-10-09 22:21:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/EPI2MNI".
2025-10-09 22:21:19 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:21:19 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:21:53 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/EPI2MNI/stderr.nipype-init).
2025-10-09 22:21:53 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:21:53 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/SharpenEPI/sub-cIVs032_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/SharpenEPI/sub-cIVs032_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/SharpenEPI/sub-cIVs032_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:23:03 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:23:03 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:23:03 | INFO | niworkflows | Generating visual report
2025-10-09 22:23:20 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 121.039882s.
2025-10-09 22:23:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8fda5306677586eff5748a755790e5f52cefcb68/post_n4".
2025-10-09 22:23:21 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:23:23 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.262433s.
2025-10-09 22:23:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/8fda5306677586eff5748a755790e5f52cefcb68/sp_mask".
2025-10-09 22:23:25 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:23:26 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.643745s.
2025-10-09 22:23:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/8fda5306677586eff5748a755790e5f52cefcb68/drift".
2025-10-09 22:23:27 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:23:27 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9707, 0.9901, 0.9883, 0.9904, 0.9853, 0.9829.
2025-10-09 22:23:29 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.5356619999999999s.
2025-10-09 22:23:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8fda5306677586eff5748a755790e5f52cefcb68/EPI2MNI".
2025-10-09 22:23:29 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:23:29 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:24:02 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8fda5306677586eff5748a755790e5f52cefcb68/EPI2MNI/stderr.nipype-init).
2025-10-09 22:24:02 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:24:02 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8fda5306677586eff5748a755790e5f52cefcb68/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8fda5306677586eff5748a755790e5f52cefcb68/SharpenEPI/sub-cIVs032_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8fda5306677586eff5748a755790e5f52cefcb68/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8fda5306677586eff5748a755790e5f52cefcb68/SharpenEPI/sub-cIVs032_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8fda5306677586eff5748a755790e5f52cefcb68/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8fda5306677586eff5748a755790e5f52cefcb68/SharpenEPI/sub-cIVs032_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8fda5306677586eff5748a755790e5f52cefcb68/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:25:09 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:25:09 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8fda5306677586eff5748a755790e5f52cefcb68/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:25:09 | INFO | niworkflows | Generating visual report
2025-10-09 22:25:25 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 116.237787s.
2025-10-09 22:25:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/post_n4".
2025-10-09 22:25:27 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:25:29 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.163914s.
2025-10-09 22:25:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/sp_mask".
2025-10-09 22:25:31 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:25:32 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.7461s.
2025-10-09 22:25:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/drift".
2025-10-09 22:25:33 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:25:33 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9855, 1.0056, 1.0226, 0.9807, 0.912, 1.0182, 1.0205, 0.9993.
2025-10-09 22:25:35 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.780607s.
2025-10-09 22:25:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/EPI2MNI".
2025-10-09 22:25:35 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:25:35 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:26:08 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/EPI2MNI/stderr.nipype-init).
2025-10-09 22:26:08 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:26:08 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/SharpenEPI/sub-cIVs032_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/SharpenEPI/sub-cIVs032_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/SharpenEPI/sub-cIVs032_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:27:15 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:27:15 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:27:15 | INFO | niworkflows | Generating visual report
2025-10-09 22:27:32 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 116.457365s.
2025-10-09 22:27:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2849da61b7af1091f6f0edc71ac073d594885588/post_n4".
2025-10-09 22:27:33 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:27:35 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.173704s.
2025-10-09 22:27:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/2849da61b7af1091f6f0edc71ac073d594885588/sp_mask".
2025-10-09 22:27:37 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:27:38 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.744266s.
2025-10-09 22:27:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/2849da61b7af1091f6f0edc71ac073d594885588/drift".
2025-10-09 22:27:39 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:27:39 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9404, 0.9807, 0.9633, 1.0468, 1.0374, 0.985, 1.0219, 1.0059.
2025-10-09 22:27:41 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.764699s.
2025-10-09 22:27:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2849da61b7af1091f6f0edc71ac073d594885588/EPI2MNI".
2025-10-09 22:27:41 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:27:41 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:28:11 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:28:11 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2849da61b7af1091f6f0edc71ac073d594885588/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2849da61b7af1091f6f0edc71ac073d594885588/SharpenEPI/sub-cIVs032_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2849da61b7af1091f6f0edc71ac073d594885588/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2849da61b7af1091f6f0edc71ac073d594885588/SharpenEPI/sub-cIVs032_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2849da61b7af1091f6f0edc71ac073d594885588/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2849da61b7af1091f6f0edc71ac073d594885588/SharpenEPI/sub-cIVs032_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2849da61b7af1091f6f0edc71ac073d594885588/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:29:19 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:29:19 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2849da61b7af1091f6f0edc71ac073d594885588/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:29:19 | INFO | niworkflows | Generating visual report
2025-10-09 22:29:36 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 114.350061s.
2025-10-09 22:29:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/post_n4".
2025-10-09 22:29:37 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:29:40 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.212693s.
2025-10-09 22:29:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/bf189a5a498c67810dd235dcc488076c198d1fa8/sp_mask".
2025-10-09 22:29:41 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:29:42 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.569489s.
2025-10-09 22:29:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/bf189a5a498c67810dd235dcc488076c198d1fa8/drift".
2025-10-09 22:29:43 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:29:43 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9903, 0.9903, 0.9976, 1.0026, 0.9988, 1.0056.
2025-10-09 22:29:45 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.445019s.
2025-10-09 22:29:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/bf189a5a498c67810dd235dcc488076c198d1fa8/EPI2MNI".
2025-10-09 22:29:45 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:29:45 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:30:16 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/bf189a5a498c67810dd235dcc488076c198d1fa8/EPI2MNI/stderr.nipype-init).
2025-10-09 22:30:16 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:30:16 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/bf189a5a498c67810dd235dcc488076c198d1fa8/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/bf189a5a498c67810dd235dcc488076c198d1fa8/SharpenEPI/sub-cIVs032_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-115_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/bf189a5a498c67810dd235dcc488076c198d1fa8/SharpenEPI/sub-cIVs032_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-115_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/bf189a5a498c67810dd235dcc488076c198d1fa8/SharpenEPI/sub-cIVs032_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-115_dwi_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:31:21 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:31:21 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/bf189a5a498c67810dd235dcc488076c198d1fa8/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:31:21 | INFO | niworkflows | Generating visual report
2025-10-09 22:31:38 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 112.745542s.
2025-10-09 22:31:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/26626567734536bcc8eaf26d14460f818f6205d0/post_n4".
2025-10-09 22:31:39 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:31:42 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.203595s.
2025-10-09 22:31:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/26626567734536bcc8eaf26d14460f818f6205d0/sp_mask".
2025-10-09 22:31:43 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:31:44 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.540991s.
2025-10-09 22:31:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/26626567734536bcc8eaf26d14460f818f6205d0/drift".
2025-10-09 22:31:45 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:31:45 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9411, 0.9193, 0.9317, 1.0005, 0.9267, 1.0041.
2025-10-09 22:31:47 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.415764s.
2025-10-09 22:31:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/26626567734536bcc8eaf26d14460f818f6205d0/EPI2MNI".
2025-10-09 22:31:47 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:31:47 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:32:16 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:32:16 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/26626567734536bcc8eaf26d14460f818f6205d0/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/26626567734536bcc8eaf26d14460f818f6205d0/SharpenEPI/sub-cIVs032_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-218_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/26626567734536bcc8eaf26d14460f818f6205d0/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/26626567734536bcc8eaf26d14460f818f6205d0/SharpenEPI/sub-cIVs032_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-218_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/26626567734536bcc8eaf26d14460f818f6205d0/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/26626567734536bcc8eaf26d14460f818f6205d0/SharpenEPI/sub-cIVs032_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-218_dwi_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/26626567734536bcc8eaf26d14460f818f6205d0/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:33:23 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:33:23 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/26626567734536bcc8eaf26d14460f818f6205d0/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:33:23 | INFO | niworkflows | Generating visual report
2025-10-09 22:33:40 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 112.282733s.
2025-10-09 22:33:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/post_n4".
2025-10-09 22:33:41 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:33:44 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.177292s.
2025-10-09 22:33:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/f6bae3741b2d0e82d80bfa72c2495515531c942f/sp_mask".
2025-10-09 22:33:45 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:33:46 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.846956s.
2025-10-09 22:33:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/f6bae3741b2d0e82d80bfa72c2495515531c942f/drift".
2025-10-09 22:33:47 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:33:48 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9738, 0.9977, 1.004, 0.9996, 0.9951, 0.9625, 0.9954, 1.0031.
2025-10-09 22:33:49 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.7894860000000001s.
2025-10-09 22:33:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6bae3741b2d0e82d80bfa72c2495515531c942f/EPI2MNI".
2025-10-09 22:33:49 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:33:49 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:34:19 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6bae3741b2d0e82d80bfa72c2495515531c942f/EPI2MNI/stderr.nipype-init).
2025-10-09 22:34:19 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:34:19 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6bae3741b2d0e82d80bfa72c2495515531c942f/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6bae3741b2d0e82d80bfa72c2495515531c942f/SharpenEPI/sub-cIVs032_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-113_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6bae3741b2d0e82d80bfa72c2495515531c942f/SharpenEPI/sub-cIVs032_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-113_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6bae3741b2d0e82d80bfa72c2495515531c942f/SharpenEPI/sub-cIVs032_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-113_dwi_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:35:27 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:35:27 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6bae3741b2d0e82d80bfa72c2495515531c942f/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:35:27 | INFO | niworkflows | Generating visual report
2025-10-09 22:35:44 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 114.4873s.
2025-10-09 22:35:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/post_n4".
2025-10-09 22:35:45 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:35:48 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.214647s.
2025-10-09 22:35:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/d3683441fb14f94ffedf06132aca58cf4e1c9099/sp_mask".
2025-10-09 22:35:49 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:35:50 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.778563s.
2025-10-09 22:35:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/d3683441fb14f94ffedf06132aca58cf4e1c9099/drift".
2025-10-09 22:35:51 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:35:52 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9976, 0.9764, 1.0017, 0.9852, 0.995, 0.9782, 0.9904, 1.0034.
2025-10-09 22:35:53 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.817753s.
2025-10-09 22:35:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d3683441fb14f94ffedf06132aca58cf4e1c9099/EPI2MNI".
2025-10-09 22:35:53 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:35:53 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:36:24 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d3683441fb14f94ffedf06132aca58cf4e1c9099/EPI2MNI/stderr.nipype-init).
2025-10-09 22:36:24 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:36:24 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d3683441fb14f94ffedf06132aca58cf4e1c9099/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d3683441fb14f94ffedf06132aca58cf4e1c9099/SharpenEPI/sub-cIVs032_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-216_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d3683441fb14f94ffedf06132aca58cf4e1c9099/SharpenEPI/sub-cIVs032_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-216_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d3683441fb14f94ffedf06132aca58cf4e1c9099/SharpenEPI/sub-cIVs032_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-216_dwi_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:37:32 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:37:32 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d3683441fb14f94ffedf06132aca58cf4e1c9099/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:37:32 | INFO | niworkflows | Generating visual report
2025-10-09 22:37:48 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 114.779066s.
2025-10-09 22:37:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/final_masked".
2025-10-09 22:37:50 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:37:50 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.030887s.
2025-10-09 22:37:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/dwidenoise".
2025-10-09 22:37:52 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:38:10 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 18.1668s.
2025-10-09 22:38:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/ResampleSegmentation".
2025-10-09 22:38:12 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:38:15 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.250118s.
2025-10-09 22:38:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8fda5306677586eff5748a755790e5f52cefcb68/final_masked".
2025-10-09 22:38:16 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:38:16 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.037239s.
2025-10-09 22:38:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/8fda5306677586eff5748a755790e5f52cefcb68/dwidenoise".
2025-10-09 22:38:18 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:38:36 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 18.288386s.
2025-10-09 22:38:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8fda5306677586eff5748a755790e5f52cefcb68/ResampleSegmentation".
2025-10-09 22:38:38 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:38:41 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.394984s.
2025-10-09 22:38:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/final_masked".
2025-10-09 22:38:42 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:38:42 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.031784s.
2025-10-09 22:38:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/dwidenoise".
2025-10-09 22:38:44 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:39:16 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 32.424242s.
2025-10-09 22:39:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/ResampleSegmentation".
2025-10-09 22:39:18 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:39:21 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.208805s.
2025-10-09 22:39:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2849da61b7af1091f6f0edc71ac073d594885588/final_masked".
2025-10-09 22:39:22 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:39:22 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.030702s.
2025-10-09 22:39:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/2849da61b7af1091f6f0edc71ac073d594885588/dwidenoise".
2025-10-09 22:39:24 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:39:56 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 32.533079s.
2025-10-09 22:39:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2849da61b7af1091f6f0edc71ac073d594885588/ResampleSegmentation".
2025-10-09 22:39:58 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:40:01 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.1586629999999998s.
2025-10-09 22:40:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/final_masked".
2025-10-09 22:40:02 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:40:02 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.031907s.
2025-10-09 22:40:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/bf189a5a498c67810dd235dcc488076c198d1fa8/dwidenoise".
2025-10-09 22:40:04 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:40:22 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 18.61678s.
2025-10-09 22:40:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/bf189a5a498c67810dd235dcc488076c198d1fa8/ResampleSegmentation".
2025-10-09 22:40:24 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:40:27 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.277977s.
2025-10-09 22:40:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/26626567734536bcc8eaf26d14460f818f6205d0/final_masked".
2025-10-09 22:40:28 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:40:28 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.031551s.
2025-10-09 22:40:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/26626567734536bcc8eaf26d14460f818f6205d0/dwidenoise".
2025-10-09 22:40:30 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:40:48 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 18.55227s.
2025-10-09 22:40:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/26626567734536bcc8eaf26d14460f818f6205d0/ResampleSegmentation".
2025-10-09 22:40:50 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:40:53 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.299081s.
2025-10-09 22:40:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/final_masked".
2025-10-09 22:40:54 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:40:54 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.031284s.
2025-10-09 22:40:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/f6bae3741b2d0e82d80bfa72c2495515531c942f/dwidenoise".
2025-10-09 22:40:56 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:41:29 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 33.424999s.
2025-10-09 22:41:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6bae3741b2d0e82d80bfa72c2495515531c942f/ResampleSegmentation".
2025-10-09 22:41:30 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:41:33 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.112385s.
2025-10-09 22:41:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/final_masked".
2025-10-09 22:41:34 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:41:34 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.032867s.
2025-10-09 22:41:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/d3683441fb14f94ffedf06132aca58cf4e1c9099/dwidenoise".
2025-10-09 22:41:36 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:42:09 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 33.474439s.
2025-10-09 22:42:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d3683441fb14f94ffedf06132aca58cf4e1c9099/ResampleSegmentation".
2025-10-09 22:42:10 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:42:13 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.267626s.
2025-10-09 22:42:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/dwimodel".
2025-10-09 22:42:14 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:42:17 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.385592s.
2025-10-09 22:42:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/estimate_sigma".
2025-10-09 22:42:18 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:42:18 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036798s.
2025-10-09 22:42:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/get_wm".
2025-10-09 22:42:20 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:42:20 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035156s.
2025-10-09 22:42:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/8fda5306677586eff5748a755790e5f52cefcb68/dwimodel".
2025-10-09 22:42:22 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:42:25 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.423729s.
2025-10-09 22:42:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8fda5306677586eff5748a755790e5f52cefcb68/estimate_sigma".
2025-10-09 22:42:26 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:42:26 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036595s.
2025-10-09 22:42:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8fda5306677586eff5748a755790e5f52cefcb68/get_wm".
2025-10-09 22:42:28 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:42:28 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034375s.
2025-10-09 22:42:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/dwimodel".
2025-10-09 22:42:30 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:42:33 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.762439s.
2025-10-09 22:42:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/estimate_sigma".
2025-10-09 22:42:34 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:42:34 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.035953s.
2025-10-09 22:42:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/get_wm".
2025-10-09 22:42:36 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:42:36 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034584s.
2025-10-09 22:42:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/2849da61b7af1091f6f0edc71ac073d594885588/dwimodel".
2025-10-09 22:42:38 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:42:41 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.758322s.
2025-10-09 22:42:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/2849da61b7af1091f6f0edc71ac073d594885588/estimate_sigma".
2025-10-09 22:42:42 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:42:42 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.035671s.
2025-10-09 22:42:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2849da61b7af1091f6f0edc71ac073d594885588/get_wm".
2025-10-09 22:42:44 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:42:44 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034954s.
2025-10-09 22:42:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/bf189a5a498c67810dd235dcc488076c198d1fa8/dwimodel".
2025-10-09 22:42:46 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:42:49 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.436939s.
2025-10-09 22:42:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/bf189a5a498c67810dd235dcc488076c198d1fa8/estimate_sigma".
2025-10-09 22:42:50 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:42:50 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036176s.
2025-10-09 22:42:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/get_wm".
2025-10-09 22:42:52 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:42:52 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034537s.
2025-10-09 22:42:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/26626567734536bcc8eaf26d14460f818f6205d0/dwimodel".
2025-10-09 22:42:54 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:42:57 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.442088s.
2025-10-09 22:42:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/26626567734536bcc8eaf26d14460f818f6205d0/estimate_sigma".
2025-10-09 22:42:58 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:42:58 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.0361s.
2025-10-09 22:43:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/26626567734536bcc8eaf26d14460f818f6205d0/get_wm".
2025-10-09 22:43:00 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:00 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034714s.
2025-10-09 22:43:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/f6bae3741b2d0e82d80bfa72c2495515531c942f/dwimodel".
2025-10-09 22:43:02 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:43:05 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.888476s.
2025-10-09 22:43:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/f6bae3741b2d0e82d80bfa72c2495515531c942f/estimate_sigma".
2025-10-09 22:43:08 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:08 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036384s.
2025-10-09 22:43:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/get_wm".
2025-10-09 22:43:10 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:10 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035623s.
2025-10-09 22:43:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/d3683441fb14f94ffedf06132aca58cf4e1c9099/dwimodel".
2025-10-09 22:43:12 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:43:15 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.871904s.
2025-10-09 22:43:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/d3683441fb14f94ffedf06132aca58cf4e1c9099/estimate_sigma".
2025-10-09 22:43:16 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:16 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.0356s.
2025-10-09 22:43:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/get_wm".
2025-10-09 22:43:18 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:18 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034481s.
2025-10-09 22:43:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/cc_mask".
2025-10-09 22:43:20 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:43:20 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.515527s.
2025-10-09 22:43:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/mosaic_fa".
2025-10-09 22:43:22 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:43:23 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.328816s.
2025-10-09 22:43:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/mosaic_md".
2025-10-09 22:43:24 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:43:25 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.384989s.
2025-10-09 22:43:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/plot_heatmap".
2025-10-09 22:43:26 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:43:27 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.456935s.
2025-10-09 22:43:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/8fda5306677586eff5748a755790e5f52cefcb68/cc_mask".
2025-10-09 22:43:28 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:43:28 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.516506s.
2025-10-09 22:43:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8fda5306677586eff5748a755790e5f52cefcb68/mosaic_fa".
2025-10-09 22:43:30 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:43:31 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.326612s.
2025-10-09 22:43:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8fda5306677586eff5748a755790e5f52cefcb68/mosaic_md".
2025-10-09 22:43:32 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:43:33 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.6496870000000001s.
2025-10-09 22:43:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8fda5306677586eff5748a755790e5f52cefcb68/plot_heatmap".
2025-10-09 22:43:34 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:43:35 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.142437s.
2025-10-09 22:43:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/cc_mask".
2025-10-09 22:43:36 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:43:36 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.4918s.
2025-10-09 22:43:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/mosaic_fa".
2025-10-09 22:43:38 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:43:39 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.400898s.
2025-10-09 22:43:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/mosaic_md".
2025-10-09 22:43:40 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:43:41 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.6526269999999998s.
2025-10-09 22:43:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/plot_heatmap".
2025-10-09 22:43:42 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:43:43 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.186245s.
2025-10-09 22:43:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/2849da61b7af1091f6f0edc71ac073d594885588/cc_mask".
2025-10-09 22:43:44 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:43:44 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.498817s.
2025-10-09 22:43:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2849da61b7af1091f6f0edc71ac073d594885588/mosaic_fa".
2025-10-09 22:43:46 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:43:47 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.439851s.
2025-10-09 22:43:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2849da61b7af1091f6f0edc71ac073d594885588/mosaic_md".
2025-10-09 22:43:48 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:43:49 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.592179s.
2025-10-09 22:43:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2849da61b7af1091f6f0edc71ac073d594885588/plot_heatmap".
2025-10-09 22:43:50 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:43:51 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.19031s.
2025-10-09 22:43:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/bf189a5a498c67810dd235dcc488076c198d1fa8/cc_mask".
2025-10-09 22:43:52 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:43:52 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.521722s.
2025-10-09 22:43:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/mosaic_fa".
2025-10-09 22:43:54 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:43:55 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.4217330000000001s.
2025-10-09 22:43:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/mosaic_md".
2025-10-09 22:43:56 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:43:57 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.419847s.
2025-10-09 22:43:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/plot_heatmap".
2025-10-09 22:43:58 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:43:59 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.370811s.
2025-10-09 22:44:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/26626567734536bcc8eaf26d14460f818f6205d0/cc_mask".
2025-10-09 22:44:00 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:44:00 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.526608s.
2025-10-09 22:44:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/26626567734536bcc8eaf26d14460f818f6205d0/mosaic_fa".
2025-10-09 22:44:02 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:44:03 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.34714s.
2025-10-09 22:44:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/26626567734536bcc8eaf26d14460f818f6205d0/mosaic_md".
2025-10-09 22:44:04 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:44:05 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.5690499999999998s.
2025-10-09 22:44:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/26626567734536bcc8eaf26d14460f818f6205d0/plot_heatmap".
2025-10-09 22:44:06 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:44:07 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.1107339999999999s.
2025-10-09 22:44:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/f6bae3741b2d0e82d80bfa72c2495515531c942f/cc_mask".
2025-10-09 22:44:08 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:44:08 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.489407s.
2025-10-09 22:44:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/mosaic_fa".
2025-10-09 22:44:10 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:44:11 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.510953s.
2025-10-09 22:44:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/mosaic_md".
2025-10-09 22:44:12 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:44:13 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.430301s.
2025-10-09 22:44:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/plot_heatmap".
2025-10-09 22:44:14 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:44:15 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.181327s.
2025-10-09 22:44:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/d3683441fb14f94ffedf06132aca58cf4e1c9099/cc_mask".
2025-10-09 22:44:16 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:44:16 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.495862s.
2025-10-09 22:44:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/mosaic_fa".
2025-10-09 22:44:18 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:44:19 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.609715s.
2025-10-09 22:44:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/mosaic_md".
2025-10-09 22:44:20 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:44:21 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.466315s.
2025-10-09 22:44:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/plot_heatmap".
2025-10-09 22:44:22 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:44:23 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.185275s.
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/ds_report_fa".
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005049s.
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/ds_report_md".
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004697s.
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a8ddd7a253cd9a092240baa3fcc1dc45ff55a7d2/ds_report_hm".
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.009604s.
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8fda5306677586eff5748a755790e5f52cefcb68/ds_report_fa".
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004619s.
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8fda5306677586eff5748a755790e5f52cefcb68/ds_report_md".
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004649s.
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8fda5306677586eff5748a755790e5f52cefcb68/ds_report_hm".
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004924s.
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/ds_report_fa".
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004829s.
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/ds_report_md".
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:24 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004595s.
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/28bd6f95285efbf0ee56f27cc2aa90b99f8e5331/ds_report_hm".
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004627s.
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2849da61b7af1091f6f0edc71ac073d594885588/ds_report_fa".
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004568s.
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2849da61b7af1091f6f0edc71ac073d594885588/ds_report_md".
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004647s.
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2849da61b7af1091f6f0edc71ac073d594885588/ds_report_hm".
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004702s.
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/ds_report_fa".
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004691s.
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/ds_report_md".
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004723s.
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/bf189a5a498c67810dd235dcc488076c198d1fa8/ds_report_hm".
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004709s.
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/26626567734536bcc8eaf26d14460f818f6205d0/ds_report_fa".
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004718s.
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/26626567734536bcc8eaf26d14460f818f6205d0/ds_report_md".
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004604s.
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/26626567734536bcc8eaf26d14460f818f6205d0/ds_report_hm".
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004683s.
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/ds_report_fa".
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004618s.
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/ds_report_md".
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004636s.
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f6bae3741b2d0e82d80bfa72c2495515531c942f/ds_report_hm".
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005007s.
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/ds_report_fa".
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004712s.
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/ds_report_md".
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004754s.
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d3683441fb14f94ffedf06132aca58cf4e1c9099/ds_report_hm".
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004715s.
2025-10-09 22:44:27 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/da238a71468e5da856c91a5f1994fca4d7f4141a/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:44:27 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:44:35 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 8.05003s.
2025-10-09 22:44:37 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/da238a71468e5da856c91a5f1994fca4d7f4141a/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:44:37 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:44:45 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 8.109666s.
2025-10-09 22:44:47 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/da238a71468e5da856c91a5f1994fca4d7f4141a/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:44:47 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:44:55 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 7.958223s.
2025-10-09 22:44:57 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/da238a71468e5da856c91a5f1994fca4d7f4141a/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:44:57 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:44:57 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:44:57 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/da238a71468e5da856c91a5f1994fca4d7f4141a/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:44:57 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:44:57 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:44:57 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/da238a71468e5da856c91a5f1994fca4d7f4141a/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:44:57 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:44:57 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:44:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/da238a71468e5da856c91a5f1994fca4d7f4141a/Enhance".
2025-10-09 22:44:59 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:44:59 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.564195s.
2025-10-09 22:45:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/da238a71468e5da856c91a5f1994fca4d7f4141a/format_tpm_names".
2025-10-09 22:45:01 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:02 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 1.685984s.
2025-10-09 22:45:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/da238a71468e5da856c91a5f1994fca4d7f4141a/Grad".
2025-10-09 22:45:03 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:09 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 6.530574s.
2025-10-09 22:45:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/da238a71468e5da856c91a5f1994fca4d7f4141a/apply_mask".
2025-10-09 22:45:11 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:45:11 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.273626s.
2025-10-09 22:45:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/da238a71468e5da856c91a5f1994fca4d7f4141a/GradientThreshold".
2025-10-09 22:45:13 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:27 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 14.253175s.
2025-10-09 22:45:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/da238a71468e5da856c91a5f1994fca4d7f4141a/segmentation".
2025-10-09 22:45:29 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:46:52 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 83.58311s.
2025-10-09 22:46:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/da238a71468e5da856c91a5f1994fca4d7f4141a/ArtifactMask".
2025-10-09 22:46:53 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:46:59 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 6.021762s.
2025-10-09 22:47:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/da238a71468e5da856c91a5f1994fca4d7f4141a/PlotHeadmask".
2025-10-09 22:47:01 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:47:04 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 3.002037s.
2025-10-09 22:47:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/da238a71468e5da856c91a5f1994fca4d7f4141a/harmonize".
2025-10-09 22:47:05 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:47:06 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 1.006207s.
2025-10-09 22:47:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/da238a71468e5da856c91a5f1994fca4d7f4141a/PlotSegmentation".
2025-10-09 22:47:07 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:47:10 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 3.460896s.
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/da238a71468e5da856c91a5f1994fca4d7f4141a/provenance".
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.052605s.
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/da238a71468e5da856c91a5f1994fca4d7f4141a/ComputeQI2".
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.229947s.
2025-10-09 22:47:11 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:47:11 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/da238a71468e5da856c91a5f1994fca4d7f4141a/ComputeQI2)
2025-10-09 22:47:11 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=239) crashed: /var/lib/condor/execute/dir_3951239/ds/logs/crash-20251009-224711-fhoffstaedter-ComputeQI2.a0-4921857f-453e-49db-9f12-f47182ba5c5a.txt
get(ok): sourcedata/raw/sub-cIVs032/ses-s1Bx1/anat/sub-cIVs032_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs032/ses-s1Bx1/dwi/sub-cIVs032_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs032/ses-s1Bx1/dwi/sub-cIVs032_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs032/ses-s1Bx1/dwi/sub-cIVs032_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs032/ses-s1Bx1/dwi/sub-cIVs032_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs032/ses-s1Bx1/dwi/sub-cIVs032_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs032/ses-s1Bx1/dwi/sub-cIVs032_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs032/ses-s1Bx2/anat/sub-cIVs032_ses-s1Bx2_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs032/ses-s1Bx2/dwi/sub-cIVs032_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-114_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs032/ses-s1Bx2/dwi/sub-cIVs032_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-217_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs032/ses-s1Bx2/dwi/sub-cIVs032_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-115_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs032/ses-s1Bx2/dwi/sub-cIVs032_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-218_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs032/ses-s1Bx2/dwi/sub-cIVs032_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs032/ses-s1Bx2/dwi/sub-cIVs032_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs032 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_3951239/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 16)
run (error: 1)
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