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ds003416-mriqc/logs/sub-cIVs026_10066482.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

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install(ok): /var/lib/condor/execute/dir_3951177/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3951177/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3951177/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_3951177/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:58:48 | IMPORTANT | mriqc | Extracting metadata and entities for 2 input runs of modality 't1w'...
2025-10-09 21:58:48 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.00 GB [maximum|average].
2025-10-09 21:58:48 | IMPORTANT | mriqc | Extracting metadata and entities for 12 input runs of modality 'dwi'...
2025-10-09 21:58:48 | WARNING | nipype.workflow | 4 cannot be processed (too short or too long)
2025-10-09 21:58:48 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:58:48 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215846_7de4a129-842c-4344-9226-6e4970072d73.toml.
2025-10-09 21:58:53 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:58:54 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:58:54 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 8 NIfTI files..
2025-10-09 21:58:55 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 2 NIfTI files..
2025-10-09 21:58:59 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:59:03 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/613ed6d8236b06ced679b89c4ef6be3ecd19998e/conform".
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.280167s.
2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/27ffbc8d774ba7a8fc11186a92968b7c14227802/conform".
2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.674184s.
2025-10-09 21:59:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/load_bmat".
2025-10-09 21:59:08 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:59:08 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.166401s.
2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/provenance".
2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.020114s.
2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/sanitize".
2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.022536s.
2025-10-09 21:59:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/75d67662372bb4bc50b09d92269a764dd015004e/load_bmat".
2025-10-09 21:59:12 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:59:12 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.02428s.
2025-10-09 21:59:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/75d67662372bb4bc50b09d92269a764dd015004e/provenance".
2025-10-09 21:59:14 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:59:14 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.020861s.
2025-10-09 21:59:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/75d67662372bb4bc50b09d92269a764dd015004e/sanitize".
2025-10-09 21:59:14 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:59:14 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.023263s.
2025-10-09 21:59:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/4965dd190e2de0364bb795d3f9523e38f6c41878/load_bmat".
2025-10-09 21:59:16 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:59:16 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.02507s.
2025-10-09 21:59:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/4965dd190e2de0364bb795d3f9523e38f6c41878/provenance".
2025-10-09 21:59:18 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:59:18 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.025719s.
2025-10-09 21:59:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/4965dd190e2de0364bb795d3f9523e38f6c41878/sanitize".
2025-10-09 21:59:18 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:59:18 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.022311s.
2025-10-09 21:59:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/2051933285dc8a4fa54797178da1a1e4553c196e/load_bmat".
2025-10-09 21:59:20 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:59:20 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024289s.
2025-10-09 21:59:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/2051933285dc8a4fa54797178da1a1e4553c196e/provenance".
2025-10-09 21:59:22 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:59:22 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.025419s.
2025-10-09 21:59:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/2051933285dc8a4fa54797178da1a1e4553c196e/sanitize".
2025-10-09 21:59:22 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:59:22 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.022643s.
2025-10-09 21:59:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/load_bmat".
2025-10-09 21:59:24 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:59:24 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024145s.
2025-10-09 21:59:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/provenance".
2025-10-09 21:59:26 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:59:26 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.021248s.
2025-10-09 21:59:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/sanitize".
2025-10-09 21:59:26 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:59:27 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.770634s.
2025-10-09 21:59:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/load_bmat".
2025-10-09 21:59:28 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:59:28 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024199s.
2025-10-09 21:59:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/provenance".
2025-10-09 21:59:30 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:59:30 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.021075s.
2025-10-09 21:59:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/sanitize".
2025-10-09 21:59:30 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:59:31 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.802047s.
2025-10-09 21:59:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/load_bmat".
2025-10-09 21:59:32 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:59:32 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023754s.
2025-10-09 21:59:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/provenance".
2025-10-09 21:59:34 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:59:34 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.026885s.
2025-10-09 21:59:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/sanitize".
2025-10-09 21:59:34 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:59:35 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.034807s.
2025-10-09 21:59:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/33077dc715ce490fa592fbfdd43981cb62f0259d/load_bmat".
2025-10-09 21:59:36 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:59:36 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024627s.
2025-10-09 21:59:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/33077dc715ce490fa592fbfdd43981cb62f0259d/provenance".
2025-10-09 21:59:38 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:59:38 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.028339s.
2025-10-09 21:59:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/33077dc715ce490fa592fbfdd43981cb62f0259d/sanitize".
2025-10-09 21:59:38 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:59:39 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.037794s.
2025-10-09 21:59:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/613ed6d8236b06ced679b89c4ef6be3ecd19998e/pre_clip".
2025-10-09 21:59:40 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:59:49 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 9.172545s.
2025-10-09 21:59:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/613ed6d8236b06ced679b89c4ef6be3ecd19998e/RotationMask".
2025-10-09 21:59:50 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:59:50 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.675248s.
2025-10-09 21:59:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/613ed6d8236b06ced679b89c4ef6be3ecd19998e/PlotMosaicNoise".
2025-10-09 21:59:52 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:59:57 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.906396s.
2025-10-09 21:59:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/27ffbc8d774ba7a8fc11186a92968b7c14227802/pre_clip".
2025-10-09 21:59:58 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:00:08 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 10.487611s.
2025-10-09 22:00:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/27ffbc8d774ba7a8fc11186a92968b7c14227802/RotationMask".
2025-10-09 22:00:10 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 22:00:11 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.970443s.
2025-10-09 22:00:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/27ffbc8d774ba7a8fc11186a92968b7c14227802/PlotMosaicNoise".
2025-10-09 22:00:12 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:00:17 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 5.067321s.
2025-10-09 22:00:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/shells".
2025-10-09 22:00:18 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 22:00:18 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000681s.
2025-10-09 22:00:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/piesno".
2025-10-09 22:00:20 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 22:00:21 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.856624s.
2025-10-09 22:00:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/75d67662372bb4bc50b09d92269a764dd015004e/shells".
2025-10-09 22:00:22 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 22:00:22 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000642s.
2025-10-09 22:00:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/75d67662372bb4bc50b09d92269a764dd015004e/piesno".
2025-10-09 22:00:24 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 22:00:25 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.897802s.
2025-10-09 22:00:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/4965dd190e2de0364bb795d3f9523e38f6c41878/shells".
2025-10-09 22:00:26 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 22:00:26 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000688s.
2025-10-09 22:00:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/4965dd190e2de0364bb795d3f9523e38f6c41878/piesno".
2025-10-09 22:00:28 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 22:00:29 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.220273s.
2025-10-09 22:00:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/2051933285dc8a4fa54797178da1a1e4553c196e/shells".
2025-10-09 22:00:30 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 22:00:30 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000678s.
2025-10-09 22:00:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/2051933285dc8a4fa54797178da1a1e4553c196e/piesno".
2025-10-09 22:00:32 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 22:00:33 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.2660040000000001s.
2025-10-09 22:00:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/shells".
2025-10-09 22:00:34 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 22:00:34 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000647s.
2025-10-09 22:00:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/piesno".
2025-10-09 22:00:36 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 22:00:37 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.943703s.
2025-10-09 22:00:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/shells".
2025-10-09 22:00:38 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 22:00:38 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000683s.
2025-10-09 22:00:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/piesno".
2025-10-09 22:00:40 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 22:00:41 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.969084s.
2025-10-09 22:00:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/shells".
2025-10-09 22:00:42 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 22:00:42 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000685s.
2025-10-09 22:00:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/piesno".
2025-10-09 22:00:44 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 22:00:45 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.210624s.
2025-10-09 22:00:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/33077dc715ce490fa592fbfdd43981cb62f0259d/shells".
2025-10-09 22:00:46 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 22:00:46 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000675s.
2025-10-09 22:00:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/33077dc715ce490fa592fbfdd43981cb62f0259d/piesno".
2025-10-09 22:00:48 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 22:00:49 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.2802310000000001s.
2025-10-09 22:00:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/613ed6d8236b06ced679b89c4ef6be3ecd19998e/pre_n4".
2025-10-09 22:00:50 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:02:54 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 123.518381s.
2025-10-09 22:02:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/613ed6d8236b06ced679b89c4ef6be3ecd19998e/ds_report_background".
2025-10-09 22:02:56 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:02:56 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.008402s.
2025-10-09 22:02:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/27ffbc8d774ba7a8fc11186a92968b7c14227802/pre_n4".
2025-10-09 22:02:56 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:01 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 125.032346s.
2025-10-09 22:05:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/27ffbc8d774ba7a8fc11186a92968b7c14227802/ds_report_background".
2025-10-09 22:05:02 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:05:02 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.00516s.
2025-10-09 22:05:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/dwi_ref".
2025-10-09 22:05:02 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:05:03 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.542161s.
2025-10-09 22:05:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/get_lowb".
2025-10-09 22:05:04 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:05:04 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.511467s.
2025-10-09 22:05:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/75d67662372bb4bc50b09d92269a764dd015004e/dwi_ref".
2025-10-09 22:05:06 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:05:07 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.661037s.
2025-10-09 22:05:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/75d67662372bb4bc50b09d92269a764dd015004e/get_lowb".
2025-10-09 22:05:08 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:05:08 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.329723s.
2025-10-09 22:05:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/4965dd190e2de0364bb795d3f9523e38f6c41878/dwi_ref".
2025-10-09 22:05:10 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:05:11 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.627707s.
2025-10-09 22:05:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/4965dd190e2de0364bb795d3f9523e38f6c41878/get_lowb".
2025-10-09 22:05:12 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:05:12 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.42306s.
2025-10-09 22:05:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/2051933285dc8a4fa54797178da1a1e4553c196e/dwi_ref".
2025-10-09 22:05:14 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:05:15 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 1.091221s.
2025-10-09 22:05:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/2051933285dc8a4fa54797178da1a1e4553c196e/get_lowb".
2025-10-09 22:05:16 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:05:16 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.43576s.
2025-10-09 22:05:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/dwi_ref".
2025-10-09 22:05:18 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:05:19 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.601831s.
2025-10-09 22:05:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/get_lowb".
2025-10-09 22:05:20 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:05:20 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.476075s.
2025-10-09 22:05:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/dwi_ref".
2025-10-09 22:05:22 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:05:23 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.562759s.
2025-10-09 22:05:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/get_lowb".
2025-10-09 22:05:24 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:05:24 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.319478s.
2025-10-09 22:05:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/dwi_ref".
2025-10-09 22:05:26 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:05:27 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.723803s.
2025-10-09 22:05:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/get_lowb".
2025-10-09 22:05:28 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:05:28 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.410207s.
2025-10-09 22:05:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/33077dc715ce490fa592fbfdd43981cb62f0259d/dwi_ref".
2025-10-09 22:05:30 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:05:31 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.651225s.
2025-10-09 22:05:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/33077dc715ce490fa592fbfdd43981cb62f0259d/get_lowb".
2025-10-09 22:05:32 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:05:32 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.400604s.
2025-10-09 22:05:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/613ed6d8236b06ced679b89c4ef6be3ecd19998e/synthstrip".
2025-10-09 22:05:34 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:06:59 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 84.93326s.
2025-10-09 22:07:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/27ffbc8d774ba7a8fc11186a92968b7c14227802/synthstrip".
2025-10-09 22:07:00 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:08:22 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 81.550853s.
2025-10-09 22:08:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/pre_clip".
2025-10-09 22:08:22 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:23 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.576109s.
2025-10-09 22:08:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/SharpenEPI".
2025-10-09 22:08:24 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:31 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.063419s.
2025-10-09 22:08:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/hmc_b0".
2025-10-09 22:08:32 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:52 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.042521s.
2025-10-09 22:08:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75d67662372bb4bc50b09d92269a764dd015004e/pre_clip".
2025-10-09 22:08:54 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:55 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.58396s.
2025-10-09 22:08:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75d67662372bb4bc50b09d92269a764dd015004e/SharpenEPI".
2025-10-09 22:08:56 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:03 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.154064s.
2025-10-09 22:09:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/75d67662372bb4bc50b09d92269a764dd015004e/hmc_b0".
2025-10-09 22:09:04 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:09:24 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 19.871747s.
2025-10-09 22:09:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/pre_clip".
2025-10-09 22:09:26 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:09:27 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.578976s.
2025-10-09 22:09:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4965dd190e2de0364bb795d3f9523e38f6c41878/SharpenEPI".
2025-10-09 22:09:28 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:35 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.076263s.
2025-10-09 22:09:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/4965dd190e2de0364bb795d3f9523e38f6c41878/hmc_b0".
2025-10-09 22:09:36 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:10:01 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 25.38039s.
2025-10-09 22:10:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2051933285dc8a4fa54797178da1a1e4553c196e/pre_clip".
2025-10-09 22:10:02 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:10:03 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.588742s.
2025-10-09 22:10:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2051933285dc8a4fa54797178da1a1e4553c196e/SharpenEPI".
2025-10-09 22:10:04 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:11 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.062553s.
2025-10-09 22:10:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/2051933285dc8a4fa54797178da1a1e4553c196e/hmc_b0".
2025-10-09 22:10:12 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:10:37 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 24.784244s.
2025-10-09 22:10:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/pre_clip".
2025-10-09 22:10:38 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:10:39 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.58473s.
2025-10-09 22:10:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/SharpenEPI".
2025-10-09 22:10:40 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:47 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.073889s.
2025-10-09 22:10:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/hmc_b0".
2025-10-09 22:10:48 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:11:08 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 19.513901s.
2025-10-09 22:11:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/pre_clip".
2025-10-09 22:11:08 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:11:09 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.582658s.
2025-10-09 22:11:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/SharpenEPI".
2025-10-09 22:11:10 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:17 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.033614s.
2025-10-09 22:11:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/hmc_b0".
2025-10-09 22:11:18 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:11:38 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 19.511029s.
2025-10-09 22:11:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/pre_clip".
2025-10-09 22:11:38 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:11:39 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.587875s.
2025-10-09 22:11:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/SharpenEPI".
2025-10-09 22:11:40 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:47 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.044461s.
2025-10-09 22:11:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/hmc_b0".
2025-10-09 22:11:48 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:12:12 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 24.331785s.
2025-10-09 22:12:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/pre_clip".
2025-10-09 22:12:14 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:12:15 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.604237s.
2025-10-09 22:12:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/33077dc715ce490fa592fbfdd43981cb62f0259d/SharpenEPI".
2025-10-09 22:12:16 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:23 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.051537s.
2025-10-09 22:12:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/33077dc715ce490fa592fbfdd43981cb62f0259d/hmc_b0".
2025-10-09 22:12:24 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:12:49 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 24.501382s.
2025-10-09 22:12:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/613ed6d8236b06ced679b89c4ef6be3ecd19998e/post_n4".
2025-10-09 22:12:50 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:15 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 24.647156s.
2025-10-09 22:13:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/613ed6d8236b06ced679b89c4ef6be3ecd19998e/smoothness".
2025-10-09 22:13:16 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:13:21 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 4.656736s.
2025-10-09 22:13:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/613ed6d8236b06ced679b89c4ef6be3ecd19998e/PlotMosaicZoomed".
2025-10-09 22:13:22 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:13:27 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 4.635627s.
2025-10-09 22:13:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/613ed6d8236b06ced679b89c4ef6be3ecd19998e/PlotBrainmask".
2025-10-09 22:13:28 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:13:32 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.53199s.
2025-10-09 22:13:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/27ffbc8d774ba7a8fc11186a92968b7c14227802/post_n4".
2025-10-09 22:13:32 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:57 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 24.62785s.
2025-10-09 22:13:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/27ffbc8d774ba7a8fc11186a92968b7c14227802/smoothness".
2025-10-09 22:13:58 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:14:03 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 4.496005s.
2025-10-09 22:14:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/27ffbc8d774ba7a8fc11186a92968b7c14227802/PlotMosaicZoomed".
2025-10-09 22:14:04 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:14:09 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 4.680613s.
2025-10-09 22:14:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/27ffbc8d774ba7a8fc11186a92968b7c14227802/PlotBrainmask".
2025-10-09 22:14:10 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:14:14 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.995958s.
2025-10-09 22:14:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/pre_n4".
2025-10-09 22:14:16 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:14:23 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.141496s.
2025-10-09 22:14:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75d67662372bb4bc50b09d92269a764dd015004e/pre_n4".
2025-10-09 22:14:24 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:14:31 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.148291s.
2025-10-09 22:14:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/pre_n4".
2025-10-09 22:14:32 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:14:39 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.154252s.
2025-10-09 22:14:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2051933285dc8a4fa54797178da1a1e4553c196e/pre_n4".
2025-10-09 22:14:40 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:14:47 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.137954s.
2025-10-09 22:14:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/pre_n4".
2025-10-09 22:14:48 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:14:55 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.139842s.
2025-10-09 22:14:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/pre_n4".
2025-10-09 22:14:56 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:03 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.1263s.
2025-10-09 22:15:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/pre_n4".
2025-10-09 22:15:04 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:11 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.116932s.
2025-10-09 22:15:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/pre_n4".
2025-10-09 22:15:12 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:19 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.121977s.
2025-10-09 22:15:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/613ed6d8236b06ced679b89c4ef6be3ecd19998e/final_masked".
2025-10-09 22:15:20 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:15:20 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.303055s.
2025-10-09 22:15:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/SpatialNormalization".
2025-10-09 22:15:22 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:15:23 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:16:43 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/SpatialNormalization/stderr.nipype-init).
2025-10-09 22:16:43 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:16:43 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:17:00 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:17:01 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:17:01 | INFO | niworkflows | Generating visual report
2025-10-09 22:17:20 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 117.495514s.
2025-10-09 22:17:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/613ed6d8236b06ced679b89c4ef6be3ecd19998e/ds_report_zoomed".
2025-10-09 22:17:20 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:20 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.0053s.
2025-10-09 22:17:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/613ed6d8236b06ced679b89c4ef6be3ecd19998e/ds_report_bmask".
2025-10-09 22:17:20 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:20 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004902s.
2025-10-09 22:17:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/27ffbc8d774ba7a8fc11186a92968b7c14227802/final_masked".
2025-10-09 22:17:21 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:17:21 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.33169s.
2025-10-09 22:17:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/27ffbc8d774ba7a8fc11186a92968b7c14227802/SpatialNormalization".
2025-10-09 22:17:22 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:17:23 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:18:43 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:18:43 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/27ffbc8d774ba7a8fc11186a92968b7c14227802/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/27ffbc8d774ba7a8fc11186a92968b7c14227802/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/27ffbc8d774ba7a8fc11186a92968b7c14227802/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/27ffbc8d774ba7a8fc11186a92968b7c14227802/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/27ffbc8d774ba7a8fc11186a92968b7c14227802/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:19:00 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:19:02 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/27ffbc8d774ba7a8fc11186a92968b7c14227802/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/27ffbc8d774ba7a8fc11186a92968b7c14227802/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:19:02 | INFO | niworkflows | Generating visual report
2025-10-09 22:19:21 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 118.836866s.
2025-10-09 22:19:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/27ffbc8d774ba7a8fc11186a92968b7c14227802/ds_report_zoomed".
2025-10-09 22:19:22 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:19:22 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004858s.
2025-10-09 22:19:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/27ffbc8d774ba7a8fc11186a92968b7c14227802/ds_report_bmask".
2025-10-09 22:19:23 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:19:23 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004913s.
2025-10-09 22:19:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/synthstrip".
2025-10-09 22:19:23 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:20:21 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 58.182044s.
2025-10-09 22:20:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75d67662372bb4bc50b09d92269a764dd015004e/synthstrip".
2025-10-09 22:20:22 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:21:21 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 58.412041s.
2025-10-09 22:21:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/synthstrip".
2025-10-09 22:21:23 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:22:21 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 58.016885s.
2025-10-09 22:22:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2051933285dc8a4fa54797178da1a1e4553c196e/synthstrip".
2025-10-09 22:22:22 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:23:20 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 57.162596s.
2025-10-09 22:23:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/synthstrip".
2025-10-09 22:23:20 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:24:01 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 40.83453s.
2025-10-09 22:24:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/synthstrip".
2025-10-09 22:24:02 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:24:43 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 40.295943s.
2025-10-09 22:24:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/synthstrip".
2025-10-09 22:24:45 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:25:25 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 40.025979s.
2025-10-09 22:25:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/synthstrip".
2025-10-09 22:25:27 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:26:06 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 39.702105s.
2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/613ed6d8236b06ced679b89c4ef6be3ecd19998e/ds_report_norm".
2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004628s.
2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/27ffbc8d774ba7a8fc11186a92968b7c14227802/ds_report_norm".
2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004483s.
2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/post_n4".
2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:26:09 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.253167s.
2025-10-09 22:26:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/sp_mask".
2025-10-09 22:26:11 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:26:11 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.582123s.
2025-10-09 22:26:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/drift".
2025-10-09 22:26:13 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:26:13 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0124, 1.0095, 1.0141, 1.0095, 1.012, 0.9628.
2025-10-09 22:26:14 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.538877s.
2025-10-09 22:26:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/EPI2MNI".
2025-10-09 22:26:15 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:26:15 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:26:44 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/EPI2MNI/stderr.nipype-init).
2025-10-09 22:26:44 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:26:44 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/SharpenEPI/sub-cIVs026_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/SharpenEPI/sub-cIVs026_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/SharpenEPI/sub-cIVs026_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:27:53 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:27:53 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:27:53 | INFO | niworkflows | Generating visual report
2025-10-09 22:28:09 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 114.849861s.
2025-10-09 22:28:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75d67662372bb4bc50b09d92269a764dd015004e/post_n4".
2025-10-09 22:28:11 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:28:13 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.2526s.
2025-10-09 22:28:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/75d67662372bb4bc50b09d92269a764dd015004e/sp_mask".
2025-10-09 22:28:15 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:28:15 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.579652s.
2025-10-09 22:28:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/75d67662372bb4bc50b09d92269a764dd015004e/drift".
2025-10-09 22:28:17 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:28:17 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0013, 0.9964, 1.0036, 0.9993, 0.8944, 0.979.
2025-10-09 22:28:18 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.423076s.
2025-10-09 22:28:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75d67662372bb4bc50b09d92269a764dd015004e/EPI2MNI".
2025-10-09 22:28:19 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:28:19 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:28:46 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:28:46 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75d67662372bb4bc50b09d92269a764dd015004e/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75d67662372bb4bc50b09d92269a764dd015004e/SharpenEPI/sub-cIVs026_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75d67662372bb4bc50b09d92269a764dd015004e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75d67662372bb4bc50b09d92269a764dd015004e/SharpenEPI/sub-cIVs026_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75d67662372bb4bc50b09d92269a764dd015004e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75d67662372bb4bc50b09d92269a764dd015004e/SharpenEPI/sub-cIVs026_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75d67662372bb4bc50b09d92269a764dd015004e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:29:53 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:29:53 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75d67662372bb4bc50b09d92269a764dd015004e/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:29:53 | INFO | niworkflows | Generating visual report
2025-10-09 22:30:10 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 111.357056s.
2025-10-09 22:30:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/post_n4".
2025-10-09 22:30:11 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:30:13 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.253901s.
2025-10-09 22:30:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/4965dd190e2de0364bb795d3f9523e38f6c41878/sp_mask".
2025-10-09 22:30:15 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:30:16 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.844701s.
2025-10-09 22:30:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/4965dd190e2de0364bb795d3f9523e38f6c41878/drift".
2025-10-09 22:30:17 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:30:17 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 1.0006, 0.999, 1.0063, 1.0066, 1.0005, 0.9667, 1.0051, 1.0099.
2025-10-09 22:30:19 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.861596s.
2025-10-09 22:30:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4965dd190e2de0364bb795d3f9523e38f6c41878/EPI2MNI".
2025-10-09 22:30:19 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:30:19 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:30:46 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4965dd190e2de0364bb795d3f9523e38f6c41878/EPI2MNI/stderr.nipype-init).
2025-10-09 22:30:46 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:30:46 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4965dd190e2de0364bb795d3f9523e38f6c41878/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4965dd190e2de0364bb795d3f9523e38f6c41878/SharpenEPI/sub-cIVs026_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4965dd190e2de0364bb795d3f9523e38f6c41878/SharpenEPI/sub-cIVs026_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4965dd190e2de0364bb795d3f9523e38f6c41878/SharpenEPI/sub-cIVs026_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:31:53 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:31:53 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4965dd190e2de0364bb795d3f9523e38f6c41878/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:31:53 | INFO | niworkflows | Generating visual report
2025-10-09 22:32:10 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 111.644425s.
2025-10-09 22:32:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2051933285dc8a4fa54797178da1a1e4553c196e/post_n4".
2025-10-09 22:32:11 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:32:13 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.269603s.
2025-10-09 22:32:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/2051933285dc8a4fa54797178da1a1e4553c196e/sp_mask".
2025-10-09 22:32:15 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:32:16 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.853525s.
2025-10-09 22:32:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/2051933285dc8a4fa54797178da1a1e4553c196e/drift".
2025-10-09 22:32:17 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:32:17 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9997, 0.9708, 0.9858, 0.9957, 0.9908, 0.9769, 0.9868, 1.0078.
2025-10-09 22:32:19 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.8752529999999998s.
2025-10-09 22:32:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2051933285dc8a4fa54797178da1a1e4553c196e/EPI2MNI".
2025-10-09 22:32:21 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:32:21 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:32:51 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:32:51 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2051933285dc8a4fa54797178da1a1e4553c196e/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2051933285dc8a4fa54797178da1a1e4553c196e/SharpenEPI/sub-cIVs026_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2051933285dc8a4fa54797178da1a1e4553c196e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2051933285dc8a4fa54797178da1a1e4553c196e/SharpenEPI/sub-cIVs026_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2051933285dc8a4fa54797178da1a1e4553c196e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2051933285dc8a4fa54797178da1a1e4553c196e/SharpenEPI/sub-cIVs026_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2051933285dc8a4fa54797178da1a1e4553c196e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:33:59 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:33:59 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2051933285dc8a4fa54797178da1a1e4553c196e/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:33:59 | INFO | niworkflows | Generating visual report
2025-10-09 22:34:16 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 114.949191s.
2025-10-09 22:34:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/post_n4".
2025-10-09 22:34:17 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:34:19 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.323378s.
2025-10-09 22:34:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/sp_mask".
2025-10-09 22:34:21 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:34:21 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.568743s.
2025-10-09 22:34:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/drift".
2025-10-09 22:34:23 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:34:23 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0024, 0.9994, 1.0053, 1.001, 1.0041, 0.996.
2025-10-09 22:34:24 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.505063s.
2025-10-09 22:34:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/EPI2MNI".
2025-10-09 22:34:25 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:34:25 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:34:53 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/EPI2MNI/stderr.nipype-init).
2025-10-09 22:34:53 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:34:53 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/SharpenEPI/sub-cIVs026_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-108_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/SharpenEPI/sub-cIVs026_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-108_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/SharpenEPI/sub-cIVs026_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-108_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:35:59 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:35:59 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:35:59 | INFO | niworkflows | Generating visual report
2025-10-09 22:36:16 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 111.635307s.
2025-10-09 22:36:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/post_n4".
2025-10-09 22:36:17 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:36:19 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.310803s.
2025-10-09 22:36:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/sp_mask".
2025-10-09 22:36:21 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:36:21 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.593287s.
2025-10-09 22:36:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/drift".
2025-10-09 22:36:23 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:36:23 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9967, 0.9993, 1.0021, 1.0044, 1.0017, 0.9972.
2025-10-09 22:36:24 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.4865840000000001s.
2025-10-09 22:36:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/EPI2MNI".
2025-10-09 22:36:25 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:36:25 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:36:54 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/EPI2MNI/stderr.nipype-init).
2025-10-09 22:36:54 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:36:54 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/SharpenEPI/sub-cIVs026_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-211_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/SharpenEPI/sub-cIVs026_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-211_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/SharpenEPI/sub-cIVs026_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-211_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:38:01 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:38:01 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:38:01 | INFO | niworkflows | Generating visual report
2025-10-09 22:38:18 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 112.889411s.
2025-10-09 22:38:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/post_n4".
2025-10-09 22:38:19 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:38:21 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.293657s.
2025-10-09 22:38:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/sp_mask".
2025-10-09 22:38:23 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:38:24 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.8627s.
2025-10-09 22:38:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/drift".
2025-10-09 22:38:25 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:38:25 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 1.0008, 0.9974, 0.9975, 1.0035, 1.0023, 0.9984, 1.0047, 0.9937.
2025-10-09 22:38:27 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.87691s.
2025-10-09 22:38:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/EPI2MNI".
2025-10-09 22:38:29 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:38:29 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:38:58 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:38:58 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/SharpenEPI/sub-cIVs026_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-106_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/SharpenEPI/sub-cIVs026_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-106_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/SharpenEPI/sub-cIVs026_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-106_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:40:04 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:40:04 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:40:04 | INFO | niworkflows | Generating visual report
2025-10-09 22:40:21 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 111.680385s.
2025-10-09 22:40:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/post_n4".
2025-10-09 22:40:21 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:40:23 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.293953s.
2025-10-09 22:40:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/33077dc715ce490fa592fbfdd43981cb62f0259d/sp_mask".
2025-10-09 22:40:25 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:40:26 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.857728s.
2025-10-09 22:40:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/33077dc715ce490fa592fbfdd43981cb62f0259d/drift".
2025-10-09 22:40:27 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:40:27 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 1.001, 0.9981, 1.0041, 1.0068, 1.0028, 1.0017, 1.0074, 0.9952.
2025-10-09 22:40:29 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.8489499999999999s.
2025-10-09 22:40:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/33077dc715ce490fa592fbfdd43981cb62f0259d/EPI2MNI".
2025-10-09 22:40:29 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:40:29 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:40:58 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/33077dc715ce490fa592fbfdd43981cb62f0259d/EPI2MNI/stderr.nipype-init).
2025-10-09 22:40:58 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:40:58 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/33077dc715ce490fa592fbfdd43981cb62f0259d/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/33077dc715ce490fa592fbfdd43981cb62f0259d/SharpenEPI/sub-cIVs026_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-209_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/33077dc715ce490fa592fbfdd43981cb62f0259d/SharpenEPI/sub-cIVs026_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-209_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/33077dc715ce490fa592fbfdd43981cb62f0259d/SharpenEPI/sub-cIVs026_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-209_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:42:01 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:42:01 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/33077dc715ce490fa592fbfdd43981cb62f0259d/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:42:01 | INFO | niworkflows | Generating visual report
2025-10-09 22:42:19 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 109.710107s.
2025-10-09 22:42:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/final_masked".
2025-10-09 22:42:19 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:42:19 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.032348s.
2025-10-09 22:42:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/dwidenoise".
2025-10-09 22:42:21 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:42:41 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 19.764416s.
2025-10-09 22:42:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/ResampleSegmentation".
2025-10-09 22:42:41 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:42:44 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.352078s.
2025-10-09 22:42:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75d67662372bb4bc50b09d92269a764dd015004e/final_masked".
2025-10-09 22:42:45 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:42:45 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.032023s.
2025-10-09 22:42:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/75d67662372bb4bc50b09d92269a764dd015004e/dwidenoise".
2025-10-09 22:42:47 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:43:07 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 19.613268s.
2025-10-09 22:43:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75d67662372bb4bc50b09d92269a764dd015004e/ResampleSegmentation".
2025-10-09 22:43:07 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:43:10 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.323335s.
2025-10-09 22:43:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/final_masked".
2025-10-09 22:43:11 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:43:11 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.032596s.
2025-10-09 22:43:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/4965dd190e2de0364bb795d3f9523e38f6c41878/dwidenoise".
2025-10-09 22:43:13 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:43:48 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 35.228785s.
2025-10-09 22:43:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4965dd190e2de0364bb795d3f9523e38f6c41878/ResampleSegmentation".
2025-10-09 22:43:49 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:43:52 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.391397s.
2025-10-09 22:43:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2051933285dc8a4fa54797178da1a1e4553c196e/final_masked".
2025-10-09 22:43:53 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:43:53 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.033623s.
2025-10-09 22:43:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/2051933285dc8a4fa54797178da1a1e4553c196e/dwidenoise".
2025-10-09 22:43:55 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:44:30 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 34.57115s.
2025-10-09 22:44:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2051933285dc8a4fa54797178da1a1e4553c196e/ResampleSegmentation".
2025-10-09 22:44:31 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:44:34 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.389123s.
2025-10-09 22:44:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/final_masked".
2025-10-09 22:44:35 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:44:35 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.033588s.
2025-10-09 22:44:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/dwidenoise".
2025-10-09 22:44:37 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:44:57 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 20.033098s.
2025-10-09 22:44:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/ResampleSegmentation".
2025-10-09 22:44:59 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:45:02 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.331998s.
2025-10-09 22:45:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/final_masked".
2025-10-09 22:45:03 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:45:03 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.035313s.
2025-10-09 22:45:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/dwidenoise".
2025-10-09 22:45:05 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:45:25 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 20.059018s.
2025-10-09 22:45:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/ResampleSegmentation".
2025-10-09 22:45:27 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:45:30 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.127233s.
2025-10-09 22:45:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/final_masked".
2025-10-09 22:45:31 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:45:31 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.033109s.
2025-10-09 22:45:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/dwidenoise".
2025-10-09 22:45:33 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:46:10 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 36.436391s.
2025-10-09 22:46:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/ResampleSegmentation".
2025-10-09 22:46:11 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:46:15 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.421374s.
2025-10-09 22:46:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/final_masked".
2025-10-09 22:46:15 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:46:15 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.033153s.
2025-10-09 22:46:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/33077dc715ce490fa592fbfdd43981cb62f0259d/dwidenoise".
2025-10-09 22:46:17 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:46:53 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 36.32151s.
2025-10-09 22:46:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/33077dc715ce490fa592fbfdd43981cb62f0259d/ResampleSegmentation".
2025-10-09 22:46:55 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:46:58 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.210997s.
2025-10-09 22:46:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/dwimodel".
2025-10-09 22:46:59 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:47:03 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.68861s.
2025-10-09 22:47:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/estimate_sigma".
2025-10-09 22:47:03 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:03 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038231s.
2025-10-09 22:47:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/get_wm".
2025-10-09 22:47:05 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:05 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035894s.
2025-10-09 22:47:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/75d67662372bb4bc50b09d92269a764dd015004e/dwimodel".
2025-10-09 22:47:07 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.606154s.
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/75d67662372bb4bc50b09d92269a764dd015004e/estimate_sigma".
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038133s.
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/75d67662372bb4bc50b09d92269a764dd015004e/get_wm".
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035808s.
2025-10-09 22:47:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/4965dd190e2de0364bb795d3f9523e38f6c41878/dwimodel".
2025-10-09 22:47:15 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:47:19 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.037194s.
2025-10-09 22:47:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/4965dd190e2de0364bb795d3f9523e38f6c41878/estimate_sigma".
2025-10-09 22:47:21 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:21 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036785s.
2025-10-09 22:47:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/get_wm".
2025-10-09 22:47:23 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:23 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035697s.
2025-10-09 22:47:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/2051933285dc8a4fa54797178da1a1e4553c196e/dwimodel".
2025-10-09 22:47:25 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:47:29 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.95399s.
2025-10-09 22:47:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/2051933285dc8a4fa54797178da1a1e4553c196e/estimate_sigma".
2025-10-09 22:47:31 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:31 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036576s.
2025-10-09 22:47:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2051933285dc8a4fa54797178da1a1e4553c196e/get_wm".
2025-10-09 22:47:33 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:33 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.037183s.
2025-10-09 22:47:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/dwimodel".
2025-10-09 22:47:35 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:47:39 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.677097s.
2025-10-09 22:47:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/estimate_sigma".
2025-10-09 22:47:39 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:39 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036777s.
2025-10-09 22:47:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/get_wm".
2025-10-09 22:47:41 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:41 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.03569s.
2025-10-09 22:47:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/dwimodel".
2025-10-09 22:47:43 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:47:47 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.676361s.
2025-10-09 22:47:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/estimate_sigma".
2025-10-09 22:47:47 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:47 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.03863s.
2025-10-09 22:47:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/get_wm".
2025-10-09 22:47:49 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:49 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035298s.
2025-10-09 22:47:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/dwimodel".
2025-10-09 22:47:51 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:47:55 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.123276s.
2025-10-09 22:47:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/estimate_sigma".
2025-10-09 22:47:57 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:57 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.054867s.
2025-10-09 22:47:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/get_wm".
2025-10-09 22:47:59 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:59 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034799s.
2025-10-09 22:48:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/33077dc715ce490fa592fbfdd43981cb62f0259d/dwimodel".
2025-10-09 22:48:01 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:48:05 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.121531s.
2025-10-09 22:48:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/33077dc715ce490fa592fbfdd43981cb62f0259d/estimate_sigma".
2025-10-09 22:48:07 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:48:07 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036274s.
2025-10-09 22:48:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/get_wm".
2025-10-09 22:48:09 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:48:09 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035212s.
2025-10-09 22:48:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/cc_mask".
2025-10-09 22:48:11 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:48:12 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.516197s.
2025-10-09 22:48:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/mosaic_fa".
2025-10-09 22:48:13 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:48:15 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.4735559999999999s.
2025-10-09 22:48:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/mosaic_md".
2025-10-09 22:48:15 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:48:17 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.482154s.
2025-10-09 22:48:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/plot_heatmap".
2025-10-09 22:48:17 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:48:19 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.477079s.
2025-10-09 22:48:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/75d67662372bb4bc50b09d92269a764dd015004e/cc_mask".
2025-10-09 22:48:19 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:48:20 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.505054s.
2025-10-09 22:48:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/75d67662372bb4bc50b09d92269a764dd015004e/mosaic_fa".
2025-10-09 22:48:21 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:48:23 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.376994s.
2025-10-09 22:48:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/75d67662372bb4bc50b09d92269a764dd015004e/mosaic_md".
2025-10-09 22:48:23 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:48:25 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.682364s.
2025-10-09 22:48:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/75d67662372bb4bc50b09d92269a764dd015004e/plot_heatmap".
2025-10-09 22:48:25 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:48:26 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.1473849999999999s.
2025-10-09 22:48:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/4965dd190e2de0364bb795d3f9523e38f6c41878/cc_mask".
2025-10-09 22:48:27 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:48:28 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.516071s.
2025-10-09 22:48:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/mosaic_fa".
2025-10-09 22:48:29 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:48:31 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.546114s.
2025-10-09 22:48:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/mosaic_md".
2025-10-09 22:48:31 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:48:33 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.739773s.
2025-10-09 22:48:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/plot_heatmap".
2025-10-09 22:48:33 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:48:34 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.184812s.
2025-10-09 22:48:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/2051933285dc8a4fa54797178da1a1e4553c196e/cc_mask".
2025-10-09 22:48:35 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:48:36 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.523284s.
2025-10-09 22:48:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2051933285dc8a4fa54797178da1a1e4553c196e/mosaic_fa".
2025-10-09 22:48:37 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:48:39 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.5867550000000001s.
2025-10-09 22:48:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2051933285dc8a4fa54797178da1a1e4553c196e/mosaic_md".
2025-10-09 22:48:39 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:48:41 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.855964s.
2025-10-09 22:48:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2051933285dc8a4fa54797178da1a1e4553c196e/plot_heatmap".
2025-10-09 22:48:41 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:48:42 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.214522s.
2025-10-09 22:48:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/cc_mask".
2025-10-09 22:48:43 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:48:44 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.496377s.
2025-10-09 22:48:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/mosaic_fa".
2025-10-09 22:48:45 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:48:47 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.539766s.
2025-10-09 22:48:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/mosaic_md".
2025-10-09 22:48:47 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:48:49 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.553833s.
2025-10-09 22:48:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/plot_heatmap".
2025-10-09 22:48:49 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:48:51 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.458361s.
2025-10-09 22:48:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/cc_mask".
2025-10-09 22:48:51 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:48:52 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.490363s.
2025-10-09 22:48:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/mosaic_fa".
2025-10-09 22:48:53 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:48:55 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.5601669999999999s.
2025-10-09 22:48:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/mosaic_md".
2025-10-09 22:48:55 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:48:57 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.790198s.
2025-10-09 22:48:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/plot_heatmap".
2025-10-09 22:48:57 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:48:58 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.16744s.
2025-10-09 22:48:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/cc_mask".
2025-10-09 22:48:59 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:49:00 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.525291s.
2025-10-09 22:49:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/mosaic_fa".
2025-10-09 22:49:01 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:49:03 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.742854s.
2025-10-09 22:49:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/mosaic_md".
2025-10-09 22:49:03 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:49:05 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.784502s.
2025-10-09 22:49:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/plot_heatmap".
2025-10-09 22:49:05 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:49:06 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.266056s.
2025-10-09 22:49:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/33077dc715ce490fa592fbfdd43981cb62f0259d/cc_mask".
2025-10-09 22:49:07 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:49:08 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.566025s.
2025-10-09 22:49:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/mosaic_fa".
2025-10-09 22:49:09 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:49:11 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.6984599999999999s.
2025-10-09 22:49:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/mosaic_md".
2025-10-09 22:49:11 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:49:13 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.825178s.
2025-10-09 22:49:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/plot_heatmap".
2025-10-09 22:49:13 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:49:14 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.266557s.
2025-10-09 22:49:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/ds_report_fa".
2025-10-09 22:49:15 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:15 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005235s.
2025-10-09 22:49:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/ds_report_md".
2025-10-09 22:49:15 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:15 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005029s.
2025-10-09 22:49:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b78dc28d1d7ea70bd69784d4f92a9b9d03e41102/ds_report_hm".
2025-10-09 22:49:15 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:15 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005484s.
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/75d67662372bb4bc50b09d92269a764dd015004e/ds_report_fa".
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.00481s.
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/75d67662372bb4bc50b09d92269a764dd015004e/ds_report_md".
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004823s.
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/75d67662372bb4bc50b09d92269a764dd015004e/ds_report_hm".
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.00726s.
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/ds_report_fa".
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004993s.
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/ds_report_md".
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005103s.
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4965dd190e2de0364bb795d3f9523e38f6c41878/ds_report_hm".
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004988s.
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2051933285dc8a4fa54797178da1a1e4553c196e/ds_report_fa".
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004861s.
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2051933285dc8a4fa54797178da1a1e4553c196e/ds_report_md".
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.00495s.
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2051933285dc8a4fa54797178da1a1e4553c196e/ds_report_hm".
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005028s.
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/ds_report_fa".
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005443s.
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/ds_report_md".
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005532s.
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4c3fe6352ca74b8c494a500ef8e99221ac637f9d/ds_report_hm".
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005223s.
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/ds_report_fa".
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004978s.
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/ds_report_md".
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:17 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004884s.
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8d0bd2c323410a7e6c4359980e987d9321fdd4c7/ds_report_hm".
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005026s.
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/ds_report_fa".
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005069s.
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/ds_report_md".
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005011s.
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cd4b6ac76be889b5147f2e5d5769730cc52e8c7d/ds_report_hm".
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005015s.
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/ds_report_fa".
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005022s.
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/ds_report_md".
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004908s.
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/33077dc715ce490fa592fbfdd43981cb62f0259d/ds_report_hm".
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:18 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005002s.
2025-10-09 22:49:19 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:49:19 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:49:27 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 8.517311s.
2025-10-09 22:49:29 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:49:29 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:49:37 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 8.513695s.
2025-10-09 22:49:39 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:49:39 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:49:47 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 8.513008s.
2025-10-09 22:49:49 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:49:49 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:49:49 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:49:49 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:49:49 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:49:49 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:49:49 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/613ed6d8236b06ced679b89c4ef6be3ecd19998e/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:49:49 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:49:49 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:49:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/613ed6d8236b06ced679b89c4ef6be3ecd19998e/Enhance".
2025-10-09 22:49:51 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:51 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.602426s.
2025-10-09 22:49:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/613ed6d8236b06ced679b89c4ef6be3ecd19998e/format_tpm_names".
2025-10-09 22:49:53 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:54 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 1.7515s.
2025-10-09 22:49:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/613ed6d8236b06ced679b89c4ef6be3ecd19998e/Grad".
2025-10-09 22:49:55 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:01 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 6.58879s.
2025-10-09 22:50:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/613ed6d8236b06ced679b89c4ef6be3ecd19998e/apply_mask".
2025-10-09 22:50:03 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:50:03 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.284107s.
2025-10-09 22:50:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/613ed6d8236b06ced679b89c4ef6be3ecd19998e/GradientThreshold".
2025-10-09 22:50:05 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:19 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 14.179065s.
2025-10-09 22:50:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/613ed6d8236b06ced679b89c4ef6be3ecd19998e/segmentation".
2025-10-09 22:50:21 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:51:49 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 88.098245s.
2025-10-09 22:51:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/613ed6d8236b06ced679b89c4ef6be3ecd19998e/ArtifactMask".
2025-10-09 22:51:51 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:51:57 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 6.350329s.
2025-10-09 22:51:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/613ed6d8236b06ced679b89c4ef6be3ecd19998e/PlotHeadmask".
2025-10-09 22:51:59 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:52:02 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 3.35478s.
2025-10-09 22:52:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/613ed6d8236b06ced679b89c4ef6be3ecd19998e/harmonize".
2025-10-09 22:52:03 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:52:04 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 1.097931s.
2025-10-09 22:52:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/613ed6d8236b06ced679b89c4ef6be3ecd19998e/PlotSegmentation".
2025-10-09 22:52:05 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:52:08 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 3.512142s.
2025-10-09 22:52:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/613ed6d8236b06ced679b89c4ef6be3ecd19998e/provenance".
2025-10-09 22:52:09 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:52:09 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.054123s.
2025-10-09 22:52:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/613ed6d8236b06ced679b89c4ef6be3ecd19998e/ComputeQI2".
2025-10-09 22:52:09 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:52:09 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.263634s.
2025-10-09 22:52:09 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:52:09 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/613ed6d8236b06ced679b89c4ef6be3ecd19998e/ComputeQI2)
2025-10-09 22:52:09 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=239) crashed: /var/lib/condor/execute/dir_3951177/ds/logs/crash-20251009-225209-fhoffstaedter-ComputeQI2.a0-ccc893ec-e275-429f-9ac6-62d1c3bb3111.txt
get(ok): sourcedata/raw/sub-cIVs026/ses-s1Bx1/anat/sub-cIVs026_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs026/ses-s1Bx1/dwi/sub-cIVs026_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs026/ses-s1Bx1/dwi/sub-cIVs026_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs026/ses-s1Bx1/dwi/sub-cIVs026_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs026/ses-s1Bx1/dwi/sub-cIVs026_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs026/ses-s1Bx1/dwi/sub-cIVs026_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs026/ses-s1Bx1/dwi/sub-cIVs026_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs026/ses-s1Bx2/anat/sub-cIVs026_ses-s1Bx2_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs026/ses-s1Bx2/dwi/sub-cIVs026_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-107_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs026/ses-s1Bx2/dwi/sub-cIVs026_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-210_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs026/ses-s1Bx2/dwi/sub-cIVs026_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-108_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs026/ses-s1Bx2/dwi/sub-cIVs026_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-211_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs026/ses-s1Bx2/dwi/sub-cIVs026_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-106_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs026/ses-s1Bx2/dwi/sub-cIVs026_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-209_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs026 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_3951177/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 16)
run (error: 1)
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