ds003416-mriqc/logs/sub-cIVs023_10066405.out

install(ok): /var/lib/condor/execute/dir_988689/ds (dataset)
install(ok): /var/lib/condor/execute/dir_988689/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_988689/ds/sourcedata/raw]
------------------------------------------------------------------
  Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
  ----------------------------------------------------------------

  NOTICE
  Copyright © The NiPreps Developers.
  
  This product includes software developed by
  the NiPreps Community (https://nipreps.org/).
  
  Portions of this software were developed at the Department of
  Psychology at Stanford University, Stanford, CA, US.
  
  This software contains code ultimately derived from the
  PCP Quality Assessment Protocol (QAP;
  http://preprocessed-connectomes-project.org/quality-assessment-protocol)
  by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
  
  This software is also distributed as a Docker container image.
  The bootstrapping file for the image ("Dockerfile") is licensed
  under the MIT License.

  ----------------------------------------------------------------

  * BIDS dataset path: /var/lib/condor/execute/dir_988689/ds/sourcedata/raw.
  * Output folder: ..
  * Analysis levels: ['participant'].
------------------------------------------------------------------

2025-10-09 21:58:11 | IMPORTANT | mriqc            | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-10-09 21:58:11 | IMPORTANT | mriqc            | File size ('t1w'): 0.00|0.00 GB [maximum|average].
2025-10-09 21:58:11 | IMPORTANT | mriqc            | Extracting metadata and entities for 6 input runs of modality 'dwi'...
2025-10-09 21:58:11 | WARNING  | nipype.workflow  | 2 cannot be processed (too short or too long)
2025-10-09 21:58:11 | IMPORTANT | mriqc            | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:58:11 | INFO     | mriqc            | MRIQC config file: /tmp/config-20251009-215810_c0870364-e98e-4556-b8f7-27478ffeb93a.toml.
2025-10-09 21:58:15 | INFO     | matplotlib.font_manager | generated new fontManager
2025-10-09 21:58:16 | IMPORTANT | mriqc            | Building MRIQC's workflows...
2025-10-09 21:58:16 | INFO     | nipype.workflow  | Building diffusion MRIQC workflow for 4 NIfTI files..
2025-10-09 21:58:17 | INFO     | nipype.workflow  | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-10-09 21:58:21 | IMPORTANT | mriqc            | Workflow building finished (exit code 0).
2025-10-09 21:58:24 | INFO     | nipype.workflow  | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:58:24 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/06871170b2fec22bf02efa8c75d5154f4c015983/conform".
2025-10-09 21:58:24 | INFO     | nipype.workflow  | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:58:25 | INFO     | nipype.workflow  | [Node] Finished "conform", elapsed time 0.296234s.
2025-10-09 21:58:26 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/load_bmat".
2025-10-09 21:58:26 | INFO     | nipype.workflow  | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:27 | INFO     | nipype.workflow  | [Node] Finished "load_bmat", elapsed time 0.154493s.
2025-10-09 21:58:28 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/sanitize".
2025-10-09 21:58:28 | INFO     | nipype.workflow  | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:29 | INFO     | nipype.workflow  | [Node] Finished "sanitize", elapsed time 0.568222s.
2025-10-09 21:58:30 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/14e04577c2ff78c62690ef08e12c1c90714a16fe/provenance".
2025-10-09 21:58:30 | INFO     | nipype.workflow  | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:30 | INFO     | nipype.workflow  | [Node] Finished "provenance", elapsed time 0.01611s.
2025-10-09 21:58:30 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/load_bmat".
2025-10-09 21:58:30 | INFO     | nipype.workflow  | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:30 | INFO     | nipype.workflow  | [Node] Finished "load_bmat", elapsed time 0.020707s.
2025-10-09 21:58:32 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/sanitize".
2025-10-09 21:58:32 | INFO     | nipype.workflow  | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:33 | INFO     | nipype.workflow  | [Node] Finished "sanitize", elapsed time 0.602488s.
2025-10-09 21:58:34 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/provenance".
2025-10-09 21:58:34 | INFO     | nipype.workflow  | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:34 | INFO     | nipype.workflow  | [Node] Finished "provenance", elapsed time 0.015841s.
2025-10-09 21:58:34 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/load_bmat".
2025-10-09 21:58:34 | INFO     | nipype.workflow  | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:34 | INFO     | nipype.workflow  | [Node] Finished "load_bmat", elapsed time 0.021691s.
2025-10-09 21:58:36 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/sanitize".
2025-10-09 21:58:36 | INFO     | nipype.workflow  | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:37 | INFO     | nipype.workflow  | [Node] Finished "sanitize", elapsed time 0.735061s.
2025-10-09 21:58:38 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/provenance".
2025-10-09 21:58:38 | INFO     | nipype.workflow  | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:38 | INFO     | nipype.workflow  | [Node] Finished "provenance", elapsed time 0.020228s.
2025-10-09 21:58:38 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/load_bmat".
2025-10-09 21:58:38 | INFO     | nipype.workflow  | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:38 | INFO     | nipype.workflow  | [Node] Finished "load_bmat", elapsed time 0.020634s.
2025-10-09 21:58:40 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/sanitize".
2025-10-09 21:58:40 | INFO     | nipype.workflow  | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:41 | INFO     | nipype.workflow  | [Node] Finished "sanitize", elapsed time 0.736315s.
2025-10-09 21:58:42 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8b51a22e7a564fb235fcca7f90df95f990121825/provenance".
2025-10-09 21:58:42 | INFO     | nipype.workflow  | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:42 | INFO     | nipype.workflow  | [Node] Finished "provenance", elapsed time 0.020301s.
2025-10-09 21:58:42 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/06871170b2fec22bf02efa8c75d5154f4c015983/pre_clip".
2025-10-09 21:58:42 | INFO     | nipype.workflow  | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:58:49 | INFO     | nipype.workflow  | [Node] Finished "pre_clip", elapsed time 6.354612s.
2025-10-09 21:58:50 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/06871170b2fec22bf02efa8c75d5154f4c015983/RotationMask".
2025-10-09 21:58:50 | INFO     | nipype.workflow  | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:58:51 | INFO     | nipype.workflow  | [Node] Finished "RotationMask", elapsed time 0.524422s.
2025-10-09 21:58:52 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/PlotMosaicNoise".
2025-10-09 21:58:52 | INFO     | nipype.workflow  | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:58:56 | INFO     | nipype.workflow  | [Node] Finished "PlotMosaicNoise", elapsed time 3.962833s.
2025-10-09 21:58:58 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/shells".
2025-10-09 21:58:58 | INFO     | nipype.workflow  | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:58 | INFO     | nipype.workflow  | [Node] Finished "shells", elapsed time 0.000639s.
2025-10-09 21:59:00 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/piesno".
2025-10-09 21:59:00 | INFO     | nipype.workflow  | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:01 | INFO     | nipype.workflow  | [Node] Finished "piesno", elapsed time 0.640473s.
2025-10-09 21:59:02 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/shells".
2025-10-09 21:59:02 | INFO     | nipype.workflow  | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:02 | INFO     | nipype.workflow  | [Node] Finished "shells", elapsed time 0.000601s.
2025-10-09 21:59:04 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/piesno".
2025-10-09 21:59:04 | INFO     | nipype.workflow  | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:05 | INFO     | nipype.workflow  | [Node] Finished "piesno", elapsed time 0.633419s.
2025-10-09 21:59:06 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/shells".
2025-10-09 21:59:06 | INFO     | nipype.workflow  | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:06 | INFO     | nipype.workflow  | [Node] Finished "shells", elapsed time 0.000622s.
2025-10-09 21:59:08 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/piesno".
2025-10-09 21:59:08 | INFO     | nipype.workflow  | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:09 | INFO     | nipype.workflow  | [Node] Finished "piesno", elapsed time 0.822741s.
2025-10-09 21:59:10 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/shells".
2025-10-09 21:59:10 | INFO     | nipype.workflow  | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:10 | INFO     | nipype.workflow  | [Node] Finished "shells", elapsed time 0.000687s.
2025-10-09 21:59:12 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/piesno".
2025-10-09 21:59:12 | INFO     | nipype.workflow  | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:13 | INFO     | nipype.workflow  | [Node] Finished "piesno", elapsed time 0.824292s.
2025-10-09 21:59:14 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/06871170b2fec22bf02efa8c75d5154f4c015983/pre_n4".
2025-10-09 21:59:14 | INFO     | nipype.workflow  | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:01:04 | INFO     | nipype.workflow  | [Node] Finished "pre_n4", elapsed time 109.574492s.
2025-10-09 22:01:06 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/ds_report_background".
2025-10-09 22:01:06 | INFO     | nipype.workflow  | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:01:06 | INFO     | nipype.workflow  | [Node] Finished "ds_report_background", elapsed time 0.00717s.
2025-10-09 22:01:06 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/dwi_ref".
2025-10-09 22:01:06 | INFO     | nipype.workflow  | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:07 | INFO     | nipype.workflow  | [Node] Finished "dwi_ref", elapsed time 0.379191s.
2025-10-09 22:01:08 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/get_lowb".
2025-10-09 22:01:08 | INFO     | nipype.workflow  | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:09 | INFO     | nipype.workflow  | [Node] Finished "get_lowb", elapsed time 0.238985s.
2025-10-09 22:01:10 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/dwi_ref".
2025-10-09 22:01:10 | INFO     | nipype.workflow  | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:11 | INFO     | nipype.workflow  | [Node] Finished "dwi_ref", elapsed time 0.389971s.
2025-10-09 22:01:12 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/get_lowb".
2025-10-09 22:01:12 | INFO     | nipype.workflow  | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:13 | INFO     | nipype.workflow  | [Node] Finished "get_lowb", elapsed time 0.2743s.
2025-10-09 22:01:14 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/dwi_ref".
2025-10-09 22:01:14 | INFO     | nipype.workflow  | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:15 | INFO     | nipype.workflow  | [Node] Finished "dwi_ref", elapsed time 0.491075s.
2025-10-09 22:01:16 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/get_lowb".
2025-10-09 22:01:16 | INFO     | nipype.workflow  | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:17 | INFO     | nipype.workflow  | [Node] Finished "get_lowb", elapsed time 0.322254s.
2025-10-09 22:01:18 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/dwi_ref".
2025-10-09 22:01:18 | INFO     | nipype.workflow  | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:19 | INFO     | nipype.workflow  | [Node] Finished "dwi_ref", elapsed time 0.484955s.
2025-10-09 22:01:20 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/get_lowb".
2025-10-09 22:01:20 | INFO     | nipype.workflow  | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:21 | INFO     | nipype.workflow  | [Node] Finished "get_lowb", elapsed time 0.305753s.
2025-10-09 22:01:22 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/06871170b2fec22bf02efa8c75d5154f4c015983/synthstrip".
2025-10-09 22:01:22 | INFO     | nipype.workflow  | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:02:21 | INFO     | nipype.workflow  | [Node] Finished "synthstrip", elapsed time 58.464548s.
2025-10-09 22:02:22 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/pre_clip".
2025-10-09 22:02:22 | INFO     | nipype.workflow  | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:02:23 | INFO     | nipype.workflow  | [Node] Finished "pre_clip", elapsed time 0.446567s.
2025-10-09 22:02:24 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/SharpenEPI".
2025-10-09 22:02:24 | INFO     | nipype.workflow  | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:02:31 | INFO     | nipype.workflow  | [Node] Finished "SharpenEPI", elapsed time 6.220191s.
2025-10-09 22:02:32 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/hmc_b0".
2025-10-09 22:02:32 | INFO     | nipype.workflow  | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:02:46 | INFO     | nipype.workflow  | [Node] Finished "hmc_b0", elapsed time 13.832369s.
2025-10-09 22:02:46 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/pre_clip".
2025-10-09 22:02:46 | INFO     | nipype.workflow  | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:02:47 | INFO     | nipype.workflow  | [Node] Finished "pre_clip", elapsed time 0.467179s.
2025-10-09 22:02:48 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/SharpenEPI".
2025-10-09 22:02:48 | INFO     | nipype.workflow  | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:02:55 | INFO     | nipype.workflow  | [Node] Finished "SharpenEPI", elapsed time 6.200818s.
2025-10-09 22:02:56 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/hmc_b0".
2025-10-09 22:02:56 | INFO     | nipype.workflow  | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:03:10 | INFO     | nipype.workflow  | [Node] Finished "hmc_b0", elapsed time 13.588483s.
2025-10-09 22:03:10 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/pre_clip".
2025-10-09 22:03:10 | INFO     | nipype.workflow  | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:03:11 | INFO     | nipype.workflow  | [Node] Finished "pre_clip", elapsed time 0.466115s.
2025-10-09 22:03:12 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/SharpenEPI".
2025-10-09 22:03:12 | INFO     | nipype.workflow  | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:03:19 | INFO     | nipype.workflow  | [Node] Finished "SharpenEPI", elapsed time 6.213914s.
2025-10-09 22:03:20 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/hmc_b0".
2025-10-09 22:03:20 | INFO     | nipype.workflow  | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:03:38 | INFO     | nipype.workflow  | [Node] Finished "hmc_b0", elapsed time 17.530757s.
2025-10-09 22:03:38 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/pre_clip".
2025-10-09 22:03:38 | INFO     | nipype.workflow  | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:03:39 | INFO     | nipype.workflow  | [Node] Finished "pre_clip", elapsed time 0.466161s.
2025-10-09 22:03:40 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/SharpenEPI".
2025-10-09 22:03:40 | INFO     | nipype.workflow  | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:03:47 | INFO     | nipype.workflow  | [Node] Finished "SharpenEPI", elapsed time 6.230415s.
2025-10-09 22:03:48 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/hmc_b0".
2025-10-09 22:03:48 | INFO     | nipype.workflow  | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:04:06 | INFO     | nipype.workflow  | [Node] Finished "hmc_b0", elapsed time 17.481857s.
2025-10-09 22:04:06 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/06871170b2fec22bf02efa8c75d5154f4c015983/post_n4".
2025-10-09 22:04:06 | INFO     | nipype.workflow  | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:04:26 | INFO     | nipype.workflow  | [Node] Finished "post_n4", elapsed time 19.813232s.
2025-10-09 22:04:26 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/06871170b2fec22bf02efa8c75d5154f4c015983/smoothness".
2025-10-09 22:04:26 | INFO     | nipype.workflow  | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:04:29 | INFO     | nipype.workflow  | [Node] Finished "smoothness", elapsed time 3.032244s.
2025-10-09 22:04:30 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/PlotMosaicZoomed".
2025-10-09 22:04:30 | INFO     | nipype.workflow  | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:04:34 | INFO     | nipype.workflow  | [Node] Finished "PlotMosaicZoomed", elapsed time 3.869779s.
2025-10-09 22:04:34 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/PlotBrainmask".
2025-10-09 22:04:34 | INFO     | nipype.workflow  | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:04:37 | INFO     | nipype.workflow  | [Node] Finished "PlotBrainmask", elapsed time 2.384363s.
2025-10-09 22:04:38 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/pre_n4".
2025-10-09 22:04:38 | INFO     | nipype.workflow  | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:04:45 | INFO     | nipype.workflow  | [Node] Finished "pre_n4", elapsed time 6.219483s.
2025-10-09 22:04:46 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/pre_n4".
2025-10-09 22:04:46 | INFO     | nipype.workflow  | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:04:53 | INFO     | nipype.workflow  | [Node] Finished "pre_n4", elapsed time 6.193334s.
2025-10-09 22:04:54 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/pre_n4".
2025-10-09 22:04:54 | INFO     | nipype.workflow  | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:01 | INFO     | nipype.workflow  | [Node] Finished "pre_n4", elapsed time 6.206777s.
2025-10-09 22:05:02 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/pre_n4".
2025-10-09 22:05:02 | INFO     | nipype.workflow  | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:09 | INFO     | nipype.workflow  | [Node] Finished "pre_n4", elapsed time 6.19562s.
2025-10-09 22:05:10 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/06871170b2fec22bf02efa8c75d5154f4c015983/final_masked".
2025-10-09 22:05:10 | INFO     | nipype.workflow  | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:05:11 | INFO     | nipype.workflow  | [Node] Finished "final_masked", elapsed time 0.211935s.
2025-10-09 22:05:12 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization".
2025-10-09 22:05:12 | INFO     | nipype.workflow  | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:05:13 | INFO     | niworkflows      | Estimating initial transform using AffineInitializer
2025-10-09 22:06:00 | INFO     | niworkflows      | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/stderr.nipype-init).
2025-10-09 22:06:00 | INFO     | niworkflows      | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:06:00 | INFO     | niworkflows      | Retry #1, commandline: 
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ]  --write-composite-transform 1
2025-10-09 22:06:11 | INFO     | niworkflows      | Successful spatial normalization (retry #1).
2025-10-09 22:06:12 | INFO     | niworkflows      | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:06:12 | INFO     | niworkflows      | Generating visual report
2025-10-09 22:06:23 | INFO     | nipype.workflow  | [Node] Finished "SpatialNormalization", elapsed time 71.009641s.
2025-10-09 22:06:24 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/ds_report_zoomed".
2025-10-09 22:06:25 | INFO     | nipype.workflow  | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:06:25 | INFO     | nipype.workflow  | [Node] Finished "ds_report_zoomed", elapsed time 0.004094s.
2025-10-09 22:06:25 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/ds_report_bmask".
2025-10-09 22:06:25 | INFO     | nipype.workflow  | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:06:25 | INFO     | nipype.workflow  | [Node] Finished "ds_report_bmask", elapsed time 0.003836s.
2025-10-09 22:06:25 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/synthstrip".
2025-10-09 22:06:25 | INFO     | nipype.workflow  | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:06:52 | INFO     | nipype.workflow  | [Node] Finished "synthstrip", elapsed time 27.175844s.
2025-10-09 22:06:53 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/synthstrip".
2025-10-09 22:06:53 | INFO     | nipype.workflow  | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:07:20 | INFO     | nipype.workflow  | [Node] Finished "synthstrip", elapsed time 27.1174s.
2025-10-09 22:07:21 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/synthstrip".
2025-10-09 22:07:21 | INFO     | nipype.workflow  | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:07:48 | INFO     | nipype.workflow  | [Node] Finished "synthstrip", elapsed time 27.053848s.
2025-10-09 22:07:49 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/synthstrip".
2025-10-09 22:07:49 | INFO     | nipype.workflow  | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:08:16 | INFO     | nipype.workflow  | [Node] Finished "synthstrip", elapsed time 27.137718s.
2025-10-09 22:08:17 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/ds_report_norm".
2025-10-09 22:08:17 | INFO     | nipype.workflow  | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:08:17 | INFO     | nipype.workflow  | [Node] Finished "ds_report_norm", elapsed time 0.003954s.
2025-10-09 22:08:17 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/post_n4".
2025-10-09 22:08:17 | INFO     | nipype.workflow  | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:18 | INFO     | nipype.workflow  | [Node] Finished "post_n4", elapsed time 1.853232s.
2025-10-09 22:08:21 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/sp_mask".
2025-10-09 22:08:21 | INFO     | nipype.workflow  | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:08:21 | INFO     | nipype.workflow  | [Node] Finished "sp_mask", elapsed time 0.433328s.
2025-10-09 22:08:23 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/drift".
2025-10-09 22:08:23 | INFO     | nipype.workflow  | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:08:23 | INFO     | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9996, 0.9993, 1.0077, 0.9967, 1.0018, 0.9992.
2025-10-09 22:08:24 | INFO     | nipype.workflow  | [Node] Finished "drift", elapsed time 1.092636s.
2025-10-09 22:08:25 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/EPI2MNI".
2025-10-09 22:08:25 | INFO     | nipype.workflow  | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:08:25 | INFO     | niworkflows      | Estimating initial transform using AffineInitializer
2025-10-09 22:08:45 | INFO     | niworkflows      | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:08:45 | INFO     | niworkflows      | Retry #1, commandline: 
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ]  --write-composite-transform 1
2025-10-09 22:09:42 | INFO     | niworkflows      | Successful spatial normalization (retry #1).
2025-10-09 22:09:42 | INFO     | niworkflows      | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:09:42 | INFO     | niworkflows      | Generating visual report
2025-10-09 22:09:53 | INFO     | nipype.workflow  | [Node] Finished "EPI2MNI", elapsed time 88.606684s.
2025-10-09 22:09:55 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/post_n4".
2025-10-09 22:09:55 | INFO     | nipype.workflow  | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:56 | INFO     | nipype.workflow  | [Node] Finished "post_n4", elapsed time 1.868907s.
2025-10-09 22:09:57 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/sp_mask".
2025-10-09 22:09:57 | INFO     | nipype.workflow  | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:09:57 | INFO     | nipype.workflow  | [Node] Finished "sp_mask", elapsed time 0.456291s.
2025-10-09 22:09:59 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/drift".
2025-10-09 22:09:59 | INFO     | nipype.workflow  | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:09:59 | INFO     | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9978, 0.9969, 0.9966, 0.9982, 0.9931, 0.9955.
2025-10-09 22:10:00 | INFO     | nipype.workflow  | [Node] Finished "drift", elapsed time 1.14626s.
2025-10-09 22:10:01 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/EPI2MNI".
2025-10-09 22:10:01 | INFO     | nipype.workflow  | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:10:01 | INFO     | niworkflows      | Estimating initial transform using AffineInitializer
2025-10-09 22:10:22 | INFO     | niworkflows      | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/EPI2MNI/stderr.nipype-init).
2025-10-09 22:10:22 | INFO     | niworkflows      | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:10:22 | INFO     | niworkflows      | Retry #1, commandline: 
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ]  --write-composite-transform 1
2025-10-09 22:11:19 | INFO     | niworkflows      | Successful spatial normalization (retry #1).
2025-10-09 22:11:19 | INFO     | niworkflows      | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:11:19 | INFO     | niworkflows      | Generating visual report
2025-10-09 22:11:30 | INFO     | nipype.workflow  | [Node] Finished "EPI2MNI", elapsed time 89.43894s.
2025-10-09 22:11:31 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/post_n4".
2025-10-09 22:11:31 | INFO     | nipype.workflow  | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:33 | INFO     | nipype.workflow  | [Node] Finished "post_n4", elapsed time 1.896125s.
2025-10-09 22:11:33 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/sp_mask".
2025-10-09 22:11:33 | INFO     | nipype.workflow  | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:11:33 | INFO     | nipype.workflow  | [Node] Finished "sp_mask", elapsed time 0.588308s.
2025-10-09 22:11:35 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/drift".
2025-10-09 22:11:35 | INFO     | nipype.workflow  | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:11:35 | INFO     | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9996, 1.0005, 1.003, 0.9927, 1.0051, 1.0025, 1.0053, 1.0008.
2025-10-09 22:11:36 | INFO     | nipype.workflow  | [Node] Finished "drift", elapsed time 1.3890419999999999s.
2025-10-09 22:11:37 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/EPI2MNI".
2025-10-09 22:11:37 | INFO     | nipype.workflow  | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:11:37 | INFO     | niworkflows      | Estimating initial transform using AffineInitializer
2025-10-09 22:11:58 | INFO     | niworkflows      | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/EPI2MNI/stderr.nipype-init).
2025-10-09 22:11:58 | INFO     | niworkflows      | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:11:58 | INFO     | niworkflows      | Retry #1, commandline: 
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ]  --write-composite-transform 1
2025-10-09 22:12:55 | INFO     | niworkflows      | Successful spatial normalization (retry #1).
2025-10-09 22:12:55 | INFO     | niworkflows      | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:12:55 | INFO     | niworkflows      | Generating visual report
2025-10-09 22:13:06 | INFO     | nipype.workflow  | [Node] Finished "EPI2MNI", elapsed time 89.821717s.
2025-10-09 22:13:07 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/post_n4".
2025-10-09 22:13:07 | INFO     | nipype.workflow  | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:09 | INFO     | nipype.workflow  | [Node] Finished "post_n4", elapsed time 1.8729930000000001s.
2025-10-09 22:13:09 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/sp_mask".
2025-10-09 22:13:09 | INFO     | nipype.workflow  | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:13:09 | INFO     | nipype.workflow  | [Node] Finished "sp_mask", elapsed time 0.605117s.
2025-10-09 22:13:11 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/drift".
2025-10-09 22:13:11 | INFO     | nipype.workflow  | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:13:11 | INFO     | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9996, 0.9994, 1.0039, 1.003, 1.0044, 1.001, 0.9938, 0.9983.
2025-10-09 22:13:12 | INFO     | nipype.workflow  | [Node] Finished "drift", elapsed time 1.413452s.
2025-10-09 22:13:13 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/EPI2MNI".
2025-10-09 22:13:13 | INFO     | nipype.workflow  | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:13:13 | INFO     | niworkflows      | Estimating initial transform using AffineInitializer
2025-10-09 22:13:33 | INFO     | niworkflows      | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:13:33 | INFO     | niworkflows      | Retry #1, commandline: 
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ]  --write-composite-transform 1
2025-10-09 22:14:30 | INFO     | niworkflows      | Successful spatial normalization (retry #1).
2025-10-09 22:14:30 | INFO     | niworkflows      | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:14:30 | INFO     | niworkflows      | Generating visual report
2025-10-09 22:14:42 | INFO     | nipype.workflow  | [Node] Finished "EPI2MNI", elapsed time 89.027599s.
2025-10-09 22:14:43 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/final_masked".
2025-10-09 22:14:43 | INFO     | nipype.workflow  | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:14:43 | INFO     | nipype.workflow  | [Node] Finished "final_masked", elapsed time 0.025482s.
2025-10-09 22:14:45 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/dwidenoise".
2025-10-09 22:14:45 | INFO     | nipype.workflow  | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:14:59 | INFO     | nipype.workflow  | [Node] Finished "dwidenoise", elapsed time 14.656889s.
2025-10-09 22:15:01 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/ResampleSegmentation".
2025-10-09 22:15:01 | INFO     | nipype.workflow  | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:15:03 | INFO     | nipype.workflow  | [Node] Finished "ResampleSegmentation", elapsed time 2.693662s.
2025-10-09 22:15:05 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/final_masked".
2025-10-09 22:15:05 | INFO     | nipype.workflow  | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:15:05 | INFO     | nipype.workflow  | [Node] Finished "final_masked", elapsed time 0.025288s.
2025-10-09 22:15:07 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/dwidenoise".
2025-10-09 22:15:07 | INFO     | nipype.workflow  | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:15:21 | INFO     | nipype.workflow  | [Node] Finished "dwidenoise", elapsed time 14.531673s.
2025-10-09 22:15:23 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/ResampleSegmentation".
2025-10-09 22:15:23 | INFO     | nipype.workflow  | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:15:25 | INFO     | nipype.workflow  | [Node] Finished "ResampleSegmentation", elapsed time 2.720065s.
2025-10-09 22:15:27 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/final_masked".
2025-10-09 22:15:27 | INFO     | nipype.workflow  | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:15:27 | INFO     | nipype.workflow  | [Node] Finished "final_masked", elapsed time 0.025213s.
2025-10-09 22:15:29 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/dwidenoise".
2025-10-09 22:15:29 | INFO     | nipype.workflow  | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:15:55 | INFO     | nipype.workflow  | [Node] Finished "dwidenoise", elapsed time 26.126562s.
2025-10-09 22:15:57 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/ResampleSegmentation".
2025-10-09 22:15:57 | INFO     | nipype.workflow  | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:15:59 | INFO     | nipype.workflow  | [Node] Finished "ResampleSegmentation", elapsed time 2.65149s.
2025-10-09 22:16:01 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/final_masked".
2025-10-09 22:16:01 | INFO     | nipype.workflow  | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:16:01 | INFO     | nipype.workflow  | [Node] Finished "final_masked", elapsed time 0.025356s.
2025-10-09 22:16:03 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/dwidenoise".
2025-10-09 22:16:03 | INFO     | nipype.workflow  | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:16:29 | INFO     | nipype.workflow  | [Node] Finished "dwidenoise", elapsed time 26.015258s.
2025-10-09 22:16:31 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/ResampleSegmentation".
2025-10-09 22:16:31 | INFO     | nipype.workflow  | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:16:33 | INFO     | nipype.workflow  | [Node] Finished "ResampleSegmentation", elapsed time 2.805117s.
2025-10-09 22:16:35 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/dwimodel".
2025-10-09 22:16:35 | INFO     | nipype.workflow  | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:16:37 | INFO     | nipype.workflow  | [Node] Finished "dwimodel", elapsed time 2.655244s.
2025-10-09 22:16:39 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/14e04577c2ff78c62690ef08e12c1c90714a16fe/estimate_sigma".
2025-10-09 22:16:39 | INFO     | nipype.workflow  | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:16:39 | INFO     | nipype.workflow  | [Node] Finished "estimate_sigma", elapsed time 0.029039s.
2025-10-09 22:16:41 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/get_wm".
2025-10-09 22:16:41 | INFO     | nipype.workflow  | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:16:41 | INFO     | nipype.workflow  | [Node] Finished "get_wm", elapsed time 0.028522s.
2025-10-09 22:16:43 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/dwimodel".
2025-10-09 22:16:43 | INFO     | nipype.workflow  | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:16:45 | INFO     | nipype.workflow  | [Node] Finished "dwimodel", elapsed time 2.601508s.
2025-10-09 22:16:47 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/estimate_sigma".
2025-10-09 22:16:47 | INFO     | nipype.workflow  | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:16:47 | INFO     | nipype.workflow  | [Node] Finished "estimate_sigma", elapsed time 0.029197s.
2025-10-09 22:16:49 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/get_wm".
2025-10-09 22:16:49 | INFO     | nipype.workflow  | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:16:49 | INFO     | nipype.workflow  | [Node] Finished "get_wm", elapsed time 0.027991s.
2025-10-09 22:16:51 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/dwimodel".
2025-10-09 22:16:51 | INFO     | nipype.workflow  | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:16:54 | INFO     | nipype.workflow  | [Node] Finished "dwimodel", elapsed time 2.970704s.
2025-10-09 22:16:55 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/estimate_sigma".
2025-10-09 22:16:55 | INFO     | nipype.workflow  | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:16:55 | INFO     | nipype.workflow  | [Node] Finished "estimate_sigma", elapsed time 0.029039s.
2025-10-09 22:16:57 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/get_wm".
2025-10-09 22:16:57 | INFO     | nipype.workflow  | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:16:57 | INFO     | nipype.workflow  | [Node] Finished "get_wm", elapsed time 0.028026s.
2025-10-09 22:16:59 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/dwimodel".
2025-10-09 22:16:59 | INFO     | nipype.workflow  | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:17:02 | INFO     | nipype.workflow  | [Node] Finished "dwimodel", elapsed time 3.005788s.
2025-10-09 22:17:03 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8b51a22e7a564fb235fcca7f90df95f990121825/estimate_sigma".
2025-10-09 22:17:03 | INFO     | nipype.workflow  | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:17:03 | INFO     | nipype.workflow  | [Node] Finished "estimate_sigma", elapsed time 0.029195s.
2025-10-09 22:17:05 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8b51a22e7a564fb235fcca7f90df95f990121825/get_wm".
2025-10-09 22:17:05 | INFO     | nipype.workflow  | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:17:05 | INFO     | nipype.workflow  | [Node] Finished "get_wm", elapsed time 0.028182s.
2025-10-09 22:17:07 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/cc_mask".
2025-10-09 22:17:07 | INFO     | nipype.workflow  | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:17:07 | INFO     | nipype.workflow  | [Node] Finished "cc_mask", elapsed time 0.38998s.
2025-10-09 22:17:09 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/mosaic_fa".
2025-10-09 22:17:09 | INFO     | nipype.workflow  | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:17:10 | INFO     | nipype.workflow  | [Node] Finished "mosaic_fa", elapsed time 1.159077s.
2025-10-09 22:17:11 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/mosaic_md".
2025-10-09 22:17:11 | INFO     | nipype.workflow  | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:17:12 | INFO     | nipype.workflow  | [Node] Finished "mosaic_md", elapsed time 1.366033s.
2025-10-09 22:17:13 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/plot_heatmap".
2025-10-09 22:17:13 | INFO     | nipype.workflow  | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:17:14 | INFO     | nipype.workflow  | [Node] Finished "plot_heatmap", elapsed time 0.821989s.
2025-10-09 22:17:15 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/cc_mask".
2025-10-09 22:17:15 | INFO     | nipype.workflow  | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:17:15 | INFO     | nipype.workflow  | [Node] Finished "cc_mask", elapsed time 0.380747s.
2025-10-09 22:17:17 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/mosaic_fa".
2025-10-09 22:17:17 | INFO     | nipype.workflow  | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:17:18 | INFO     | nipype.workflow  | [Node] Finished "mosaic_fa", elapsed time 1.25259s.
2025-10-09 22:17:19 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/mosaic_md".
2025-10-09 22:17:19 | INFO     | nipype.workflow  | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:17:20 | INFO     | nipype.workflow  | [Node] Finished "mosaic_md", elapsed time 1.349789s.
2025-10-09 22:17:21 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/plot_heatmap".
2025-10-09 22:17:21 | INFO     | nipype.workflow  | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:17:21 | INFO     | nipype.workflow  | [Node] Finished "plot_heatmap", elapsed time 0.77115s.
2025-10-09 22:17:23 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/cc_mask".
2025-10-09 22:17:23 | INFO     | nipype.workflow  | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:17:23 | INFO     | nipype.workflow  | [Node] Finished "cc_mask", elapsed time 0.378026s.
2025-10-09 22:17:25 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/mosaic_fa".
2025-10-09 22:17:25 | INFO     | nipype.workflow  | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:17:26 | INFO     | nipype.workflow  | [Node] Finished "mosaic_fa", elapsed time 1.377923s.
2025-10-09 22:17:27 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/mosaic_md".
2025-10-09 22:17:27 | INFO     | nipype.workflow  | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:17:28 | INFO     | nipype.workflow  | [Node] Finished "mosaic_md", elapsed time 1.261013s.
2025-10-09 22:17:29 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/plot_heatmap".
2025-10-09 22:17:29 | INFO     | nipype.workflow  | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:17:30 | INFO     | nipype.workflow  | [Node] Finished "plot_heatmap", elapsed time 0.829891s.
2025-10-09 22:17:31 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/cc_mask".
2025-10-09 22:17:31 | INFO     | nipype.workflow  | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:17:31 | INFO     | nipype.workflow  | [Node] Finished "cc_mask", elapsed time 0.411085s.
2025-10-09 22:17:33 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8b51a22e7a564fb235fcca7f90df95f990121825/mosaic_fa".
2025-10-09 22:17:33 | INFO     | nipype.workflow  | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:17:34 | INFO     | nipype.workflow  | [Node] Finished "mosaic_fa", elapsed time 1.390881s.
2025-10-09 22:17:35 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8b51a22e7a564fb235fcca7f90df95f990121825/mosaic_md".
2025-10-09 22:17:35 | INFO     | nipype.workflow  | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:17:36 | INFO     | nipype.workflow  | [Node] Finished "mosaic_md", elapsed time 1.24257s.
2025-10-09 22:17:37 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8b51a22e7a564fb235fcca7f90df95f990121825/plot_heatmap".
2025-10-09 22:17:37 | INFO     | nipype.workflow  | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:17:38 | INFO     | nipype.workflow  | [Node] Finished "plot_heatmap", elapsed time 1.007629s.
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/ds_report_fa".
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Finished "ds_report_fa", elapsed time 0.00405s.
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/ds_report_md".
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Finished "ds_report_md", elapsed time 0.003878s.
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/ds_report_hm".
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Finished "ds_report_hm", elapsed time 0.004155s.
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/ds_report_fa".
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Finished "ds_report_fa", elapsed time 0.004051s.
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/ds_report_md".
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Finished "ds_report_md", elapsed time 0.0039s.
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/ds_report_hm".
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Finished "ds_report_hm", elapsed time 0.00394s.
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/ds_report_fa".
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Finished "ds_report_fa", elapsed time 0.003898s.
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/ds_report_md".
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Finished "ds_report_md", elapsed time 0.003856s.
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/ds_report_hm".
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Finished "ds_report_hm", elapsed time 0.003875s.
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8b51a22e7a564fb235fcca7f90df95f990121825/ds_report_fa".
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Finished "ds_report_fa", elapsed time 0.003864s.
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8b51a22e7a564fb235fcca7f90df95f990121825/ds_report_md".
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:39 | INFO     | nipype.workflow  | [Node] Finished "ds_report_md", elapsed time 0.003895s.
2025-10-09 22:17:40 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8b51a22e7a564fb235fcca7f90df95f990121825/ds_report_hm".
2025-10-09 22:17:40 | INFO     | nipype.workflow  | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:17:40 | INFO     | nipype.workflow  | [Node] Finished "ds_report_hm", elapsed time 0.003878s.
2025-10-09 22:17:40 | INFO     | nipype.workflow  | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:17:40 | INFO     | nipype.workflow  | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:17:46 | INFO     | nipype.workflow  | [Node] Finished "_tpms_std2t1w0", elapsed time 6.192128s.
2025-10-09 22:17:47 | INFO     | nipype.workflow  | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:17:47 | INFO     | nipype.workflow  | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:17:53 | INFO     | nipype.workflow  | [Node] Finished "_tpms_std2t1w1", elapsed time 6.231914s.
2025-10-09 22:17:55 | INFO     | nipype.workflow  | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:17:55 | INFO     | nipype.workflow  | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:18:01 | INFO     | nipype.workflow  | [Node] Finished "_tpms_std2t1w2", elapsed time 6.213181s.
2025-10-09 22:18:03 | INFO     | nipype.workflow  | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:18:03 | INFO     | nipype.workflow  | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:18:03 | INFO     | nipype.workflow  | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:18:03 | INFO     | nipype.workflow  | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:18:03 | INFO     | nipype.workflow  | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:18:03 | INFO     | nipype.workflow  | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:18:03 | INFO     | nipype.workflow  | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:18:03 | INFO     | nipype.workflow  | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:18:03 | INFO     | nipype.workflow  | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:18:05 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/06871170b2fec22bf02efa8c75d5154f4c015983/Enhance".
2025-10-09 22:18:05 | INFO     | nipype.workflow  | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:18:05 | INFO     | nipype.workflow  | [Node] Finished "Enhance", elapsed time 0.453979s.
2025-10-09 22:18:07 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/06871170b2fec22bf02efa8c75d5154f4c015983/format_tpm_names".
2025-10-09 22:18:07 | INFO     | nipype.workflow  | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:18:08 | INFO     | nipype.workflow  | [Node] Finished "format_tpm_names", elapsed time 1.301802s.
2025-10-09 22:18:09 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/06871170b2fec22bf02efa8c75d5154f4c015983/Grad".
2025-10-09 22:18:09 | INFO     | nipype.workflow  | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:18:11 | INFO     | nipype.workflow  | [Node] Finished "Grad", elapsed time 2.007041s.
2025-10-09 22:18:13 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/06871170b2fec22bf02efa8c75d5154f4c015983/apply_mask".
2025-10-09 22:18:13 | INFO     | nipype.workflow  | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:18:13 | INFO     | nipype.workflow  | [Node] Finished "apply_mask", elapsed time 0.213869s.
2025-10-09 22:18:15 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/06871170b2fec22bf02efa8c75d5154f4c015983/GradientThreshold".
2025-10-09 22:18:15 | INFO     | nipype.workflow  | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:18:26 | INFO     | nipype.workflow  | [Node] Finished "GradientThreshold", elapsed time 10.879811s.
2025-10-09 22:18:27 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/06871170b2fec22bf02efa8c75d5154f4c015983/segmentation".
2025-10-09 22:18:27 | INFO     | nipype.workflow  | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:19:29 | INFO     | nipype.workflow  | [Node] Finished "segmentation", elapsed time 62.643069s.
2025-10-09 22:19:31 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/06871170b2fec22bf02efa8c75d5154f4c015983/ArtifactMask".
2025-10-09 22:19:31 | INFO     | nipype.workflow  | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:19:33 | INFO     | nipype.workflow  | [Node] Finished "ArtifactMask", elapsed time 2.358466s.
2025-10-09 22:19:35 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/PlotHeadmask".
2025-10-09 22:19:35 | INFO     | nipype.workflow  | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:19:37 | INFO     | nipype.workflow  | [Node] Finished "PlotHeadmask", elapsed time 1.992118s.
2025-10-09 22:19:39 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/06871170b2fec22bf02efa8c75d5154f4c015983/harmonize".
2025-10-09 22:19:39 | INFO     | nipype.workflow  | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:19:39 | INFO     | nipype.workflow  | [Node] Finished "harmonize", elapsed time 0.560944s.
2025-10-09 22:19:41 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/PlotSegmentation".
2025-10-09 22:19:41 | INFO     | nipype.workflow  | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:19:43 | INFO     | nipype.workflow  | [Node] Finished "PlotSegmentation", elapsed time 2.209568s.
2025-10-09 22:19:45 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/06871170b2fec22bf02efa8c75d5154f4c015983/provenance".
2025-10-09 22:19:45 | INFO     | nipype.workflow  | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:19:45 | INFO     | nipype.workflow  | [Node] Finished "provenance", elapsed time 0.043207s.
2025-10-09 22:19:45 | INFO     | nipype.workflow  | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/06871170b2fec22bf02efa8c75d5154f4c015983/ComputeQI2".
2025-10-09 22:19:45 | INFO     | nipype.workflow  | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:19:45 | INFO     | nipype.workflow  | [Node] Finished "ComputeQI2", elapsed time 0.186695s.
2025-10-09 22:19:45 | WARNING  | nipype.workflow  | Storing result file without outputs
2025-10-09 22:19:45 | WARNING  | nipype.workflow  | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/06871170b2fec22bf02efa8c75d5154f4c015983/ComputeQI2)
2025-10-09 22:19:45 | ERROR    | nipype.workflow  | Node ComputeQI2.a0 (taskid=127) crashed: /var/lib/condor/execute/dir_988689/ds/logs/crash-20251009-221945-fhoffstaedter-ComputeQI2.a0-629b2ee2-e14f-407a-9f4c-0edc67486699.txt
get(ok): sourcedata/raw/sub-cIVs023/ses-s1Bx1/anat/sub-cIVs023_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs023/ses-s1Bx1/dwi/sub-cIVs023_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs023/ses-s1Bx1/dwi/sub-cIVs023_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs023/ses-s1Bx1/dwi/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs023/ses-s1Bx1/dwi/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs023/ses-s1Bx1/dwi/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs023/ses-s1Bx1/dwi/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs023 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_988689/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
  get (notneeded: 4, ok: 9)
  run (error: 1)