install(ok): /var/lib/condor/execute/dir_988689/ds (dataset) install(ok): /var/lib/condor/execute/dir_988689/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_988689/ds/sourcedata/raw] ------------------------------------------------------------------ Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826 ---------------------------------------------------------------- NOTICE Copyright © The NiPreps Developers. This product includes software developed by the NiPreps Community (https://nipreps.org/). Portions of this software were developed at the Department of Psychology at Stanford University, Stanford, CA, US. This software contains code ultimately derived from the PCP Quality Assessment Protocol (QAP; http://preprocessed-connectomes-project.org/quality-assessment-protocol) by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman. This software is also distributed as a Docker container image. The bootstrapping file for the image ("Dockerfile") is licensed under the MIT License. ---------------------------------------------------------------- * BIDS dataset path: /var/lib/condor/execute/dir_988689/ds/sourcedata/raw. * Output folder: .. * Analysis levels: ['participant']. ------------------------------------------------------------------ 2025-10-09 21:58:11 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'... 2025-10-09 21:58:11 | IMPORTANT | mriqc | File size ('t1w'): 0.00|0.00 GB [maximum|average]. 2025-10-09 21:58:11 | IMPORTANT | mriqc | Extracting metadata and entities for 6 input runs of modality 'dwi'... 2025-10-09 21:58:11 | WARNING | nipype.workflow | 2 cannot be processed (too short or too long) 2025-10-09 21:58:11 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average]. 2025-10-09 21:58:11 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215810_c0870364-e98e-4556-b8f7-27478ffeb93a.toml. 2025-10-09 21:58:15 | INFO | matplotlib.font_manager | generated new fontManager 2025-10-09 21:58:16 | IMPORTANT | mriqc | Building MRIQC's workflows... 2025-10-09 21:58:16 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 4 NIfTI files.. 2025-10-09 21:58:17 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files.. 2025-10-09 21:58:21 | IMPORTANT | mriqc | Workflow building finished (exit code 0). 2025-10-09 21:58:24 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring'] 2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/06871170b2fec22bf02efa8c75d5154f4c015983/conform". 2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Executing "conform"  2025-10-09 21:58:25 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.296234s. 2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/load_bmat". 2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Executing "load_bmat"  2025-10-09 21:58:27 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.154493s. 2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/sanitize". 2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Executing "sanitize"  2025-10-09 21:58:29 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.568222s. 2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/14e04577c2ff78c62690ef08e12c1c90714a16fe/provenance". 2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Executing "provenance"  2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.01611s. 2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/load_bmat". 2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Executing "load_bmat"  2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.020707s. 2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/sanitize". 2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Executing "sanitize"  2025-10-09 21:58:33 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.602488s. 2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/provenance". 2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Executing "provenance"  2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.015841s. 2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/load_bmat". 2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Executing "load_bmat"  2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.021691s. 2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/sanitize". 2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Executing "sanitize"  2025-10-09 21:58:37 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.735061s. 2025-10-09 21:58:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/provenance". 2025-10-09 21:58:38 | INFO | nipype.workflow | [Node] Executing "provenance"  2025-10-09 21:58:38 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.020228s. 2025-10-09 21:58:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/load_bmat". 2025-10-09 21:58:38 | INFO | nipype.workflow | [Node] Executing "load_bmat"  2025-10-09 21:58:38 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.020634s. 2025-10-09 21:58:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/sanitize". 2025-10-09 21:58:40 | INFO | nipype.workflow | [Node] Executing "sanitize"  2025-10-09 21:58:41 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.736315s. 2025-10-09 21:58:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8b51a22e7a564fb235fcca7f90df95f990121825/provenance". 2025-10-09 21:58:42 | INFO | nipype.workflow | [Node] Executing "provenance"  2025-10-09 21:58:42 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.020301s. 2025-10-09 21:58:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/06871170b2fec22bf02efa8c75d5154f4c015983/pre_clip". 2025-10-09 21:58:42 | INFO | nipype.workflow | [Node] Executing "pre_clip"  2025-10-09 21:58:49 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 6.354612s. 2025-10-09 21:58:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/06871170b2fec22bf02efa8c75d5154f4c015983/RotationMask". 2025-10-09 21:58:50 | INFO | nipype.workflow | [Node] Executing "RotationMask"  2025-10-09 21:58:51 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.524422s. 2025-10-09 21:58:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/PlotMosaicNoise". 2025-10-09 21:58:52 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise"  2025-10-09 21:58:56 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 3.962833s. 2025-10-09 21:58:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/shells". 2025-10-09 21:58:58 | INFO | nipype.workflow | [Node] Executing "shells"  2025-10-09 21:58:58 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000639s. 2025-10-09 21:59:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/piesno". 2025-10-09 21:59:00 | INFO | nipype.workflow | [Node] Executing "piesno"  2025-10-09 21:59:01 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.640473s. 2025-10-09 21:59:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/shells". 2025-10-09 21:59:02 | INFO | nipype.workflow | [Node] Executing "shells"  2025-10-09 21:59:02 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000601s. 2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/piesno". 2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Executing "piesno"  2025-10-09 21:59:05 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.633419s. 2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/shells". 2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Executing "shells"  2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000622s. 2025-10-09 21:59:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/piesno". 2025-10-09 21:59:08 | INFO | nipype.workflow | [Node] Executing "piesno"  2025-10-09 21:59:09 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.822741s. 2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/shells". 2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Executing "shells"  2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000687s. 2025-10-09 21:59:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/piesno". 2025-10-09 21:59:12 | INFO | nipype.workflow | [Node] Executing "piesno"  2025-10-09 21:59:13 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.824292s. 2025-10-09 21:59:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/06871170b2fec22bf02efa8c75d5154f4c015983/pre_n4". 2025-10-09 21:59:14 | INFO | nipype.workflow | [Node] Executing "pre_n4"  2025-10-09 22:01:04 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 109.574492s. 2025-10-09 22:01:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/ds_report_background". 2025-10-09 22:01:06 | INFO | nipype.workflow | [Node] Executing "ds_report_background"  2025-10-09 22:01:06 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.00717s. 2025-10-09 22:01:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/dwi_ref". 2025-10-09 22:01:06 | INFO | nipype.workflow | [Node] Executing "dwi_ref"  2025-10-09 22:01:07 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.379191s. 2025-10-09 22:01:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/get_lowb". 2025-10-09 22:01:08 | INFO | nipype.workflow | [Node] Executing "get_lowb"  2025-10-09 22:01:09 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.238985s. 2025-10-09 22:01:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/dwi_ref". 2025-10-09 22:01:10 | INFO | nipype.workflow | [Node] Executing "dwi_ref"  2025-10-09 22:01:11 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.389971s. 2025-10-09 22:01:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/get_lowb". 2025-10-09 22:01:12 | INFO | nipype.workflow | [Node] Executing "get_lowb"  2025-10-09 22:01:13 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.2743s. 2025-10-09 22:01:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/dwi_ref". 2025-10-09 22:01:14 | INFO | nipype.workflow | [Node] Executing "dwi_ref"  2025-10-09 22:01:15 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.491075s. 2025-10-09 22:01:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/get_lowb". 2025-10-09 22:01:16 | INFO | nipype.workflow | [Node] Executing "get_lowb"  2025-10-09 22:01:17 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.322254s. 2025-10-09 22:01:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/dwi_ref". 2025-10-09 22:01:18 | INFO | nipype.workflow | [Node] Executing "dwi_ref"  2025-10-09 22:01:19 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.484955s. 2025-10-09 22:01:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/get_lowb". 2025-10-09 22:01:20 | INFO | nipype.workflow | [Node] Executing "get_lowb"  2025-10-09 22:01:21 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.305753s. 2025-10-09 22:01:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/06871170b2fec22bf02efa8c75d5154f4c015983/synthstrip". 2025-10-09 22:01:22 | INFO | nipype.workflow | [Node] Executing "synthstrip"  2025-10-09 22:02:21 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 58.464548s. 2025-10-09 22:02:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/pre_clip". 2025-10-09 22:02:22 | INFO | nipype.workflow | [Node] Executing "pre_clip"  2025-10-09 22:02:23 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.446567s. 2025-10-09 22:02:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/SharpenEPI". 2025-10-09 22:02:24 | INFO | nipype.workflow | [Node] Executing "SharpenEPI"  2025-10-09 22:02:31 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 6.220191s. 2025-10-09 22:02:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/hmc_b0". 2025-10-09 22:02:32 | INFO | nipype.workflow | [Node] Executing "hmc_b0"  2025-10-09 22:02:46 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 13.832369s. 2025-10-09 22:02:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/pre_clip". 2025-10-09 22:02:46 | INFO | nipype.workflow | [Node] Executing "pre_clip"  2025-10-09 22:02:47 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.467179s. 2025-10-09 22:02:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/SharpenEPI". 2025-10-09 22:02:48 | INFO | nipype.workflow | [Node] Executing "SharpenEPI"  2025-10-09 22:02:55 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 6.200818s. 2025-10-09 22:02:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/hmc_b0". 2025-10-09 22:02:56 | INFO | nipype.workflow | [Node] Executing "hmc_b0"  2025-10-09 22:03:10 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 13.588483s. 2025-10-09 22:03:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/pre_clip". 2025-10-09 22:03:10 | INFO | nipype.workflow | [Node] Executing "pre_clip"  2025-10-09 22:03:11 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.466115s. 2025-10-09 22:03:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/SharpenEPI". 2025-10-09 22:03:12 | INFO | nipype.workflow | [Node] Executing "SharpenEPI"  2025-10-09 22:03:19 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 6.213914s. 2025-10-09 22:03:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/hmc_b0". 2025-10-09 22:03:20 | INFO | nipype.workflow | [Node] Executing "hmc_b0"  2025-10-09 22:03:38 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 17.530757s. 2025-10-09 22:03:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/pre_clip". 2025-10-09 22:03:38 | INFO | nipype.workflow | [Node] Executing "pre_clip"  2025-10-09 22:03:39 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.466161s. 2025-10-09 22:03:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/SharpenEPI". 2025-10-09 22:03:40 | INFO | nipype.workflow | [Node] Executing "SharpenEPI"  2025-10-09 22:03:47 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 6.230415s. 2025-10-09 22:03:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/hmc_b0". 2025-10-09 22:03:48 | INFO | nipype.workflow | [Node] Executing "hmc_b0"  2025-10-09 22:04:06 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 17.481857s. 2025-10-09 22:04:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/06871170b2fec22bf02efa8c75d5154f4c015983/post_n4". 2025-10-09 22:04:06 | INFO | nipype.workflow | [Node] Executing "post_n4"  2025-10-09 22:04:26 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 19.813232s. 2025-10-09 22:04:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/06871170b2fec22bf02efa8c75d5154f4c015983/smoothness". 2025-10-09 22:04:26 | INFO | nipype.workflow | [Node] Executing "smoothness"  2025-10-09 22:04:29 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 3.032244s. 2025-10-09 22:04:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/PlotMosaicZoomed". 2025-10-09 22:04:30 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed"  2025-10-09 22:04:34 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.869779s. 2025-10-09 22:04:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/PlotBrainmask". 2025-10-09 22:04:34 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask"  2025-10-09 22:04:37 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 2.384363s. 2025-10-09 22:04:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/pre_n4". 2025-10-09 22:04:38 | INFO | nipype.workflow | [Node] Executing "pre_n4"  2025-10-09 22:04:45 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 6.219483s. 2025-10-09 22:04:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/pre_n4". 2025-10-09 22:04:46 | INFO | nipype.workflow | [Node] Executing "pre_n4"  2025-10-09 22:04:53 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 6.193334s. 2025-10-09 22:04:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/pre_n4". 2025-10-09 22:04:54 | INFO | nipype.workflow | [Node] Executing "pre_n4"  2025-10-09 22:05:01 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 6.206777s. 2025-10-09 22:05:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/pre_n4". 2025-10-09 22:05:02 | INFO | nipype.workflow | [Node] Executing "pre_n4"  2025-10-09 22:05:09 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 6.19562s. 2025-10-09 22:05:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/06871170b2fec22bf02efa8c75d5154f4c015983/final_masked". 2025-10-09 22:05:10 | INFO | nipype.workflow | [Node] Executing "final_masked"  2025-10-09 22:05:11 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.211935s. 2025-10-09 22:05:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization". 2025-10-09 22:05:12 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization"  2025-10-09 22:05:13 | INFO | niworkflows | Estimating initial transform using AffineInitializer 2025-10-09 22:06:00 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/stderr.nipype-init). 2025-10-09 22:06:00 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json. 2025-10-09 22:06:00 | INFO | niworkflows | Retry #1, commandline: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1 2025-10-09 22:06:11 | INFO | niworkflows | Successful spatial normalization (retry #1). 2025-10-09 22:06:12 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images 2025-10-09 22:06:12 | INFO | niworkflows | Generating visual report 2025-10-09 22:06:23 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 71.009641s. 2025-10-09 22:06:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/ds_report_zoomed". 2025-10-09 22:06:25 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed"  2025-10-09 22:06:25 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004094s. 2025-10-09 22:06:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/ds_report_bmask". 2025-10-09 22:06:25 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask"  2025-10-09 22:06:25 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.003836s. 2025-10-09 22:06:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/synthstrip". 2025-10-09 22:06:25 | INFO | nipype.workflow | [Node] Executing "synthstrip"  2025-10-09 22:06:52 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 27.175844s. 2025-10-09 22:06:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/synthstrip". 2025-10-09 22:06:53 | INFO | nipype.workflow | [Node] Executing "synthstrip"  2025-10-09 22:07:20 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 27.1174s. 2025-10-09 22:07:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/synthstrip". 2025-10-09 22:07:21 | INFO | nipype.workflow | [Node] Executing "synthstrip"  2025-10-09 22:07:48 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 27.053848s. 2025-10-09 22:07:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/synthstrip". 2025-10-09 22:07:49 | INFO | nipype.workflow | [Node] Executing "synthstrip"  2025-10-09 22:08:16 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 27.137718s. 2025-10-09 22:08:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/ds_report_norm". 2025-10-09 22:08:17 | INFO | nipype.workflow | [Node] Executing "ds_report_norm"  2025-10-09 22:08:17 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.003954s. 2025-10-09 22:08:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/post_n4". 2025-10-09 22:08:17 | INFO | nipype.workflow | [Node] Executing "post_n4"  2025-10-09 22:08:18 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.853232s. 2025-10-09 22:08:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/sp_mask". 2025-10-09 22:08:21 | INFO | nipype.workflow | [Node] Executing "sp_mask"  2025-10-09 22:08:21 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.433328s. 2025-10-09 22:08:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/drift". 2025-10-09 22:08:23 | INFO | nipype.workflow | [Node] Executing "drift"  2025-10-09 22:08:23 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9996, 0.9993, 1.0077, 0.9967, 1.0018, 0.9992. 2025-10-09 22:08:24 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.092636s. 2025-10-09 22:08:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/EPI2MNI". 2025-10-09 22:08:25 | INFO | nipype.workflow | [Node] Executing "EPI2MNI"  2025-10-09 22:08:25 | INFO | niworkflows | Estimating initial transform using AffineInitializer 2025-10-09 22:08:45 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json. 2025-10-09 22:08:45 | INFO | niworkflows | Retry #1, commandline: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1 2025-10-09 22:09:42 | INFO | niworkflows | Successful spatial normalization (retry #1). 2025-10-09 22:09:42 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/EPI2MNI/epi_to_mni_Warped.nii.gz) images 2025-10-09 22:09:42 | INFO | niworkflows | Generating visual report 2025-10-09 22:09:53 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 88.606684s. 2025-10-09 22:09:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/post_n4". 2025-10-09 22:09:55 | INFO | nipype.workflow | [Node] Executing "post_n4"  2025-10-09 22:09:56 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.868907s. 2025-10-09 22:09:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/sp_mask". 2025-10-09 22:09:57 | INFO | nipype.workflow | [Node] Executing "sp_mask"  2025-10-09 22:09:57 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.456291s. 2025-10-09 22:09:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/drift". 2025-10-09 22:09:59 | INFO | nipype.workflow | [Node] Executing "drift"  2025-10-09 22:09:59 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9978, 0.9969, 0.9966, 0.9982, 0.9931, 0.9955. 2025-10-09 22:10:00 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.14626s. 2025-10-09 22:10:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/EPI2MNI". 2025-10-09 22:10:01 | INFO | nipype.workflow | [Node] Executing "EPI2MNI"  2025-10-09 22:10:01 | INFO | niworkflows | Estimating initial transform using AffineInitializer 2025-10-09 22:10:22 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/EPI2MNI/stderr.nipype-init). 2025-10-09 22:10:22 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json. 2025-10-09 22:10:22 | INFO | niworkflows | Retry #1, commandline: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1 2025-10-09 22:11:19 | INFO | niworkflows | Successful spatial normalization (retry #1). 2025-10-09 22:11:19 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/EPI2MNI/epi_to_mni_Warped.nii.gz) images 2025-10-09 22:11:19 | INFO | niworkflows | Generating visual report 2025-10-09 22:11:30 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 89.43894s. 2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/post_n4". 2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Executing "post_n4"  2025-10-09 22:11:33 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.896125s. 2025-10-09 22:11:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/sp_mask". 2025-10-09 22:11:33 | INFO | nipype.workflow | [Node] Executing "sp_mask"  2025-10-09 22:11:33 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.588308s. 2025-10-09 22:11:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/drift". 2025-10-09 22:11:35 | INFO | nipype.workflow | [Node] Executing "drift"  2025-10-09 22:11:35 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9996, 1.0005, 1.003, 0.9927, 1.0051, 1.0025, 1.0053, 1.0008. 2025-10-09 22:11:36 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.3890419999999999s. 2025-10-09 22:11:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/EPI2MNI". 2025-10-09 22:11:37 | INFO | nipype.workflow | [Node] Executing "EPI2MNI"  2025-10-09 22:11:37 | INFO | niworkflows | Estimating initial transform using AffineInitializer 2025-10-09 22:11:58 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/EPI2MNI/stderr.nipype-init). 2025-10-09 22:11:58 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json. 2025-10-09 22:11:58 | INFO | niworkflows | Retry #1, commandline: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1 2025-10-09 22:12:55 | INFO | niworkflows | Successful spatial normalization (retry #1). 2025-10-09 22:12:55 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/EPI2MNI/epi_to_mni_Warped.nii.gz) images 2025-10-09 22:12:55 | INFO | niworkflows | Generating visual report 2025-10-09 22:13:06 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 89.821717s. 2025-10-09 22:13:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/post_n4". 2025-10-09 22:13:07 | INFO | nipype.workflow | [Node] Executing "post_n4"  2025-10-09 22:13:09 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.8729930000000001s. 2025-10-09 22:13:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/sp_mask". 2025-10-09 22:13:09 | INFO | nipype.workflow | [Node] Executing "sp_mask"  2025-10-09 22:13:09 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.605117s. 2025-10-09 22:13:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/drift". 2025-10-09 22:13:11 | INFO | nipype.workflow | [Node] Executing "drift"  2025-10-09 22:13:11 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9996, 0.9994, 1.0039, 1.003, 1.0044, 1.001, 0.9938, 0.9983. 2025-10-09 22:13:12 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.413452s. 2025-10-09 22:13:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/EPI2MNI". 2025-10-09 22:13:13 | INFO | nipype.workflow | [Node] Executing "EPI2MNI"  2025-10-09 22:13:13 | INFO | niworkflows | Estimating initial transform using AffineInitializer 2025-10-09 22:13:33 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json. 2025-10-09 22:13:33 | INFO | niworkflows | Retry #1, commandline: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/SharpenEPI/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1 2025-10-09 22:14:30 | INFO | niworkflows | Successful spatial normalization (retry #1). 2025-10-09 22:14:30 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/EPI2MNI/epi_to_mni_Warped.nii.gz) images 2025-10-09 22:14:30 | INFO | niworkflows | Generating visual report 2025-10-09 22:14:42 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 89.027599s. 2025-10-09 22:14:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/final_masked". 2025-10-09 22:14:43 | INFO | nipype.workflow | [Node] Executing "final_masked"  2025-10-09 22:14:43 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.025482s. 2025-10-09 22:14:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/dwidenoise". 2025-10-09 22:14:45 | INFO | nipype.workflow | [Node] Executing "dwidenoise"  2025-10-09 22:14:59 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 14.656889s. 2025-10-09 22:15:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/14e04577c2ff78c62690ef08e12c1c90714a16fe/ResampleSegmentation". 2025-10-09 22:15:01 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation"  2025-10-09 22:15:03 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.693662s. 2025-10-09 22:15:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/final_masked". 2025-10-09 22:15:05 | INFO | nipype.workflow | [Node] Executing "final_masked"  2025-10-09 22:15:05 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.025288s. 2025-10-09 22:15:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/dwidenoise". 2025-10-09 22:15:07 | INFO | nipype.workflow | [Node] Executing "dwidenoise"  2025-10-09 22:15:21 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 14.531673s. 2025-10-09 22:15:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/ResampleSegmentation". 2025-10-09 22:15:23 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation"  2025-10-09 22:15:25 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.720065s. 2025-10-09 22:15:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/final_masked". 2025-10-09 22:15:27 | INFO | nipype.workflow | [Node] Executing "final_masked"  2025-10-09 22:15:27 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.025213s. 2025-10-09 22:15:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/dwidenoise". 2025-10-09 22:15:29 | INFO | nipype.workflow | [Node] Executing "dwidenoise"  2025-10-09 22:15:55 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 26.126562s. 2025-10-09 22:15:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/ResampleSegmentation". 2025-10-09 22:15:57 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation"  2025-10-09 22:15:59 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.65149s. 2025-10-09 22:16:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8b51a22e7a564fb235fcca7f90df95f990121825/final_masked". 2025-10-09 22:16:01 | INFO | nipype.workflow | [Node] Executing "final_masked"  2025-10-09 22:16:01 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.025356s. 2025-10-09 22:16:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/dwidenoise". 2025-10-09 22:16:03 | INFO | nipype.workflow | [Node] Executing "dwidenoise"  2025-10-09 22:16:29 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 26.015258s. 2025-10-09 22:16:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8b51a22e7a564fb235fcca7f90df95f990121825/ResampleSegmentation". 2025-10-09 22:16:31 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation"  2025-10-09 22:16:33 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.805117s. 2025-10-09 22:16:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/dwimodel". 2025-10-09 22:16:35 | INFO | nipype.workflow | [Node] Executing "dwimodel"  2025-10-09 22:16:37 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 2.655244s. 2025-10-09 22:16:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/14e04577c2ff78c62690ef08e12c1c90714a16fe/estimate_sigma". 2025-10-09 22:16:39 | INFO | nipype.workflow | [Node] Executing "estimate_sigma"  2025-10-09 22:16:39 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.029039s. 2025-10-09 22:16:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/get_wm". 2025-10-09 22:16:41 | INFO | nipype.workflow | [Node] Executing "get_wm"  2025-10-09 22:16:41 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.028522s. 2025-10-09 22:16:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/dwimodel". 2025-10-09 22:16:43 | INFO | nipype.workflow | [Node] Executing "dwimodel"  2025-10-09 22:16:45 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 2.601508s. 2025-10-09 22:16:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/estimate_sigma". 2025-10-09 22:16:47 | INFO | nipype.workflow | [Node] Executing "estimate_sigma"  2025-10-09 22:16:47 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.029197s. 2025-10-09 22:16:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/get_wm". 2025-10-09 22:16:49 | INFO | nipype.workflow | [Node] Executing "get_wm"  2025-10-09 22:16:49 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.027991s. 2025-10-09 22:16:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/dwimodel". 2025-10-09 22:16:51 | INFO | nipype.workflow | [Node] Executing "dwimodel"  2025-10-09 22:16:54 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 2.970704s. 2025-10-09 22:16:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/estimate_sigma". 2025-10-09 22:16:55 | INFO | nipype.workflow | [Node] Executing "estimate_sigma"  2025-10-09 22:16:55 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.029039s. 2025-10-09 22:16:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/get_wm". 2025-10-09 22:16:57 | INFO | nipype.workflow | [Node] Executing "get_wm"  2025-10-09 22:16:57 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.028026s. 2025-10-09 22:16:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/dwimodel". 2025-10-09 22:16:59 | INFO | nipype.workflow | [Node] Executing "dwimodel"  2025-10-09 22:17:02 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.005788s. 2025-10-09 22:17:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8b51a22e7a564fb235fcca7f90df95f990121825/estimate_sigma". 2025-10-09 22:17:03 | INFO | nipype.workflow | [Node] Executing "estimate_sigma"  2025-10-09 22:17:03 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.029195s. 2025-10-09 22:17:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8b51a22e7a564fb235fcca7f90df95f990121825/get_wm". 2025-10-09 22:17:05 | INFO | nipype.workflow | [Node] Executing "get_wm"  2025-10-09 22:17:05 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.028182s. 2025-10-09 22:17:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/14e04577c2ff78c62690ef08e12c1c90714a16fe/cc_mask". 2025-10-09 22:17:07 | INFO | nipype.workflow | [Node] Executing "cc_mask"  2025-10-09 22:17:07 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.38998s. 2025-10-09 22:17:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/mosaic_fa". 2025-10-09 22:17:09 | INFO | nipype.workflow | [Node] Executing "mosaic_fa"  2025-10-09 22:17:10 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.159077s. 2025-10-09 22:17:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/mosaic_md". 2025-10-09 22:17:11 | INFO | nipype.workflow | [Node] Executing "mosaic_md"  2025-10-09 22:17:12 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.366033s. 2025-10-09 22:17:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/plot_heatmap". 2025-10-09 22:17:13 | INFO | nipype.workflow | [Node] Executing "plot_heatmap"  2025-10-09 22:17:14 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 0.821989s. 2025-10-09 22:17:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/cc_mask". 2025-10-09 22:17:15 | INFO | nipype.workflow | [Node] Executing "cc_mask"  2025-10-09 22:17:15 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.380747s. 2025-10-09 22:17:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/mosaic_fa". 2025-10-09 22:17:17 | INFO | nipype.workflow | [Node] Executing "mosaic_fa"  2025-10-09 22:17:18 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.25259s. 2025-10-09 22:17:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/mosaic_md". 2025-10-09 22:17:19 | INFO | nipype.workflow | [Node] Executing "mosaic_md"  2025-10-09 22:17:20 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.349789s. 2025-10-09 22:17:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/plot_heatmap". 2025-10-09 22:17:21 | INFO | nipype.workflow | [Node] Executing "plot_heatmap"  2025-10-09 22:17:21 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 0.77115s. 2025-10-09 22:17:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/cc_mask". 2025-10-09 22:17:23 | INFO | nipype.workflow | [Node] Executing "cc_mask"  2025-10-09 22:17:23 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.378026s. 2025-10-09 22:17:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/mosaic_fa". 2025-10-09 22:17:25 | INFO | nipype.workflow | [Node] Executing "mosaic_fa"  2025-10-09 22:17:26 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.377923s. 2025-10-09 22:17:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/mosaic_md". 2025-10-09 22:17:27 | INFO | nipype.workflow | [Node] Executing "mosaic_md"  2025-10-09 22:17:28 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.261013s. 2025-10-09 22:17:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/plot_heatmap". 2025-10-09 22:17:29 | INFO | nipype.workflow | [Node] Executing "plot_heatmap"  2025-10-09 22:17:30 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 0.829891s. 2025-10-09 22:17:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/8b51a22e7a564fb235fcca7f90df95f990121825/cc_mask". 2025-10-09 22:17:31 | INFO | nipype.workflow | [Node] Executing "cc_mask"  2025-10-09 22:17:31 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.411085s. 2025-10-09 22:17:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8b51a22e7a564fb235fcca7f90df95f990121825/mosaic_fa". 2025-10-09 22:17:33 | INFO | nipype.workflow | [Node] Executing "mosaic_fa"  2025-10-09 22:17:34 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.390881s. 2025-10-09 22:17:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8b51a22e7a564fb235fcca7f90df95f990121825/mosaic_md". 2025-10-09 22:17:35 | INFO | nipype.workflow | [Node] Executing "mosaic_md"  2025-10-09 22:17:36 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.24257s. 2025-10-09 22:17:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8b51a22e7a564fb235fcca7f90df95f990121825/plot_heatmap". 2025-10-09 22:17:37 | INFO | nipype.workflow | [Node] Executing "plot_heatmap"  2025-10-09 22:17:38 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.007629s. 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/ds_report_fa". 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Executing "ds_report_fa"  2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.00405s. 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/ds_report_md". 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Executing "ds_report_md"  2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.003878s. 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/14e04577c2ff78c62690ef08e12c1c90714a16fe/ds_report_hm". 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Executing "ds_report_hm"  2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004155s. 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/ds_report_fa". 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Executing "ds_report_fa"  2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004051s. 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/ds_report_md". 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Executing "ds_report_md"  2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.0039s. 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6ca10de5ed7a03d62a05a4f8c5fdf76056fd5225/ds_report_hm". 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Executing "ds_report_hm"  2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.00394s. 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/ds_report_fa". 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Executing "ds_report_fa"  2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.003898s. 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/ds_report_md". 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Executing "ds_report_md"  2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.003856s. 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cdc9d97823695289aacb1fd4958e5b8d9139b1f7/ds_report_hm". 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Executing "ds_report_hm"  2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.003875s. 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8b51a22e7a564fb235fcca7f90df95f990121825/ds_report_fa". 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Executing "ds_report_fa"  2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.003864s. 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8b51a22e7a564fb235fcca7f90df95f990121825/ds_report_md". 2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Executing "ds_report_md"  2025-10-09 22:17:39 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.003895s. 2025-10-09 22:17:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8b51a22e7a564fb235fcca7f90df95f990121825/ds_report_hm". 2025-10-09 22:17:40 | INFO | nipype.workflow | [Node] Executing "ds_report_hm"  2025-10-09 22:17:40 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.003878s. 2025-10-09 22:17:40 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/tpms_std2t1w/mapflow/_tpms_std2t1w0". 2025-10-09 22:17:40 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0"  2025-10-09 22:17:46 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 6.192128s. 2025-10-09 22:17:47 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/tpms_std2t1w/mapflow/_tpms_std2t1w1". 2025-10-09 22:17:47 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1"  2025-10-09 22:17:53 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 6.231914s. 2025-10-09 22:17:55 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/tpms_std2t1w/mapflow/_tpms_std2t1w2". 2025-10-09 22:17:55 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2"  2025-10-09 22:18:01 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 6.213181s. 2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/tpms_std2t1w/mapflow/_tpms_std2t1w0". 2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs 2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached. 2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/tpms_std2t1w/mapflow/_tpms_std2t1w1". 2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs 2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached. 2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/06871170b2fec22bf02efa8c75d5154f4c015983/tpms_std2t1w/mapflow/_tpms_std2t1w2". 2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs 2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached. 2025-10-09 22:18:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/06871170b2fec22bf02efa8c75d5154f4c015983/Enhance". 2025-10-09 22:18:05 | INFO | nipype.workflow | [Node] Executing "Enhance"  2025-10-09 22:18:05 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.453979s. 2025-10-09 22:18:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/06871170b2fec22bf02efa8c75d5154f4c015983/format_tpm_names". 2025-10-09 22:18:07 | INFO | nipype.workflow | [Node] Executing "format_tpm_names"  2025-10-09 22:18:08 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 1.301802s. 2025-10-09 22:18:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/06871170b2fec22bf02efa8c75d5154f4c015983/Grad". 2025-10-09 22:18:09 | INFO | nipype.workflow | [Node] Executing "Grad"  2025-10-09 22:18:11 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 2.007041s. 2025-10-09 22:18:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/06871170b2fec22bf02efa8c75d5154f4c015983/apply_mask". 2025-10-09 22:18:13 | INFO | nipype.workflow | [Node] Executing "apply_mask"  2025-10-09 22:18:13 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.213869s. 2025-10-09 22:18:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/06871170b2fec22bf02efa8c75d5154f4c015983/GradientThreshold". 2025-10-09 22:18:15 | INFO | nipype.workflow | [Node] Executing "GradientThreshold"  2025-10-09 22:18:26 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 10.879811s. 2025-10-09 22:18:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/06871170b2fec22bf02efa8c75d5154f4c015983/segmentation". 2025-10-09 22:18:27 | INFO | nipype.workflow | [Node] Executing "segmentation"  2025-10-09 22:19:29 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 62.643069s. 2025-10-09 22:19:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/06871170b2fec22bf02efa8c75d5154f4c015983/ArtifactMask". 2025-10-09 22:19:31 | INFO | nipype.workflow | [Node] Executing "ArtifactMask"  2025-10-09 22:19:33 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 2.358466s. 2025-10-09 22:19:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/PlotHeadmask". 2025-10-09 22:19:35 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask"  2025-10-09 22:19:37 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 1.992118s. 2025-10-09 22:19:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/06871170b2fec22bf02efa8c75d5154f4c015983/harmonize". 2025-10-09 22:19:39 | INFO | nipype.workflow | [Node] Executing "harmonize"  2025-10-09 22:19:39 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.560944s. 2025-10-09 22:19:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/06871170b2fec22bf02efa8c75d5154f4c015983/PlotSegmentation". 2025-10-09 22:19:41 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation"  2025-10-09 22:19:43 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 2.209568s. 2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/06871170b2fec22bf02efa8c75d5154f4c015983/provenance". 2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] Executing "provenance"  2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.043207s. 2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/06871170b2fec22bf02efa8c75d5154f4c015983/ComputeQI2". 2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] Executing "ComputeQI2"  2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.186695s. 2025-10-09 22:19:45 | WARNING | nipype.workflow | Storing result file without outputs 2025-10-09 22:19:45 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/06871170b2fec22bf02efa8c75d5154f4c015983/ComputeQI2) 2025-10-09 22:19:45 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=127) crashed: /var/lib/condor/execute/dir_988689/ds/logs/crash-20251009-221945-fhoffstaedter-ComputeQI2.a0-629b2ee2-e14f-407a-9f4c-0edc67486699.txt get(ok): sourcedata/raw/sub-cIVs023/ses-s1Bx1/anat/sub-cIVs023_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...] get(ok): sourcedata/raw/sub-cIVs023/ses-s1Bx1/dwi/sub-cIVs023_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-112_dwi.nii.gz (file) [from s3-PUBLIC...] get(ok): sourcedata/raw/sub-cIVs023/ses-s1Bx1/dwi/sub-cIVs023_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-215_dwi.nii.gz (file) [from s3-PUBLIC...] get(ok): sourcedata/raw/sub-cIVs023/ses-s1Bx1/dwi/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...] get(ok): sourcedata/raw/sub-cIVs023/ses-s1Bx1/dwi/sub-cIVs023_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi.nii.gz (file) [from s3-PUBLIC...] get(ok): sourcedata/raw/sub-cIVs023/ses-s1Bx1/dwi/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi.nii.gz (file) [from s3-PUBLIC...] get(ok): sourcedata/raw/sub-cIVs023/ses-s1Bx1/dwi/sub-cIVs023_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi.nii.gz (file) [from s3-PUBLIC...] get(ok): sourcedata/raw/sub-cIVs023 (directory) get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...] run(error): /var/lib/condor/execute/dir_988689/ds (dataset) [./code/containers/scripts/singularity_cm...] action summary: get (notneeded: 4, ok: 9) run (error: 1)